Wall clock time and date at job start Tue Mar 31 2020 15:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00270 * 2 1 4 4 H 1.48500 * 109.47226 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47054 * 299.99686 * 3 2 1 6 6 H 1.48503 * 109.47370 * 59.99819 * 3 2 1 7 7 C 1.37873 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00124 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47368 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99804 * 169.99932 * 10 9 7 12 12 C 1.53245 * 109.33522 * 187.25545 * 11 10 9 13 13 N 1.47079 * 108.52282 * 306.17075 * 12 11 10 14 14 C 1.34774 * 120.87914 * 231.18745 * 13 12 11 15 15 O 1.21596 * 119.99675 * 174.72132 * 14 13 12 16 16 C 1.47504 * 120.00193 * 354.99403 * 14 13 12 17 17 C 1.38675 * 120.34218 * 325.89176 * 16 14 13 18 18 C 1.38982 * 120.63687 * 180.02562 * 17 16 14 19 19 C 1.36223 * 121.13956 * 0.02562 * 18 17 16 20 20 C 1.40687 * 120.17055 * 359.97438 * 19 18 17 21 21 N 1.33762 * 120.97510 * 179.97438 * 20 19 18 22 22 C 1.31330 * 119.73167 * 180.02562 * 21 20 19 23 23 C 1.39645 * 120.68092 * 359.97029 * 22 21 20 24 24 N 1.31447 * 120.64491 * 0.02562 * 23 22 21 25 25 C 1.33495 * 119.72413 * 359.74519 * 24 23 22 26 26 C 1.47080 * 118.23449 * 51.45970 * 13 12 11 27 27 C 1.46894 * 110.99924 * 294.30271 * 10 9 7 28 28 H 0.97006 * 119.99216 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47166 * 59.99380 * 9 7 2 30 30 H 1.08998 * 109.47591 * 299.99899 * 9 7 2 31 31 H 1.08998 * 109.49481 * 67.29811 * 11 10 9 32 32 H 1.09001 * 109.51413 * 307.22606 * 11 10 9 33 33 H 1.09004 * 109.62488 * 186.46106 * 12 11 10 34 34 H 1.09003 * 109.62630 * 65.88469 * 12 11 10 35 35 H 1.07999 * 119.68241 * 0.02562 * 17 16 14 36 36 H 1.07997 * 119.43266 * 180.02562 * 18 17 16 37 37 H 1.07998 * 119.91296 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.65803 * 179.97438 * 22 21 20 39 39 H 1.08006 * 119.67959 * 180.02562 * 23 22 21 40 40 H 1.08994 * 109.63082 * 68.25287 * 26 13 12 41 41 H 1.08999 * 109.62480 * 188.83042 * 26 13 12 42 42 H 1.08997 * 109.49290 * 292.70179 * 27 10 9 43 43 H 1.08997 * 109.49224 * 52.78892 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5209 -4.8935 0.2387 12 6 2.5634 -6.0033 0.4115 13 7 3.4613 -5.9864 -0.7533 14 6 3.7115 -7.1126 -1.4501 15 8 4.3785 -7.0635 -2.4656 16 6 3.1714 -8.4036 -0.9841 17 6 3.0481 -8.6627 0.3726 18 6 2.5404 -9.8772 0.8185 19 6 2.1518 -10.8433 -0.0598 20 6 2.2590 -10.6239 -1.4453 21 7 1.8827 -11.5614 -2.3220 22 6 1.9939 -11.3309 -3.6101 23 6 2.5008 -10.1157 -4.0753 24 7 2.8767 -9.1798 -3.2322 25 6 2.7685 -9.3902 -1.9184 26 6 4.0835 -4.7092 -1.1337 27 6 2.9765 -3.6492 -1.2493 28 1 -0.4849 0.8402 -0.0004 29 1 0.6245 -2.5570 -0.8896 30 1 0.6239 -2.5568 0.8903 31 1 0.8793 -5.1264 -0.6111 32 1 0.9154 -4.8193 1.1420 33 1 2.0627 -6.9695 0.4740 34 1 3.1390 -5.8266 1.3202 35 1 3.3495 -7.9135 1.0897 36 1 2.4525 -10.0583 1.8795 37 1 1.7604 -11.7801 0.3085 38 1 1.6901 -12.0888 -4.3168 39 1 2.5848 -9.9431 -5.1381 40 1 4.8024 -4.4105 -0.3709 41 1 4.5884 -4.8194 -2.0934 42 1 2.3147 -3.8994 -2.0784 43 1 3.4271 -2.6724 -1.4249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602204596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:51 Heat of formation + Delta-G solvation = 40.500451 kcal Electronic energy + Delta-G solvation = -27183.470808 eV Core-core repulsion = 23421.570976 eV Total energy + Delta-G solvation = -3761.899832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.59721 -41.16691 -39.00119 -38.32456 -36.03591 -35.77367 -34.43340 -32.73315 -31.89797 -31.45008 -29.94443 -27.48657 -26.42860 -25.55793 -24.95044 -24.28718 -23.57142 -21.95768 -20.36023 -20.04870 -18.98438 -18.51097 -17.94584 -17.73851 -16.92569 -16.70684 -16.47572 -16.11093 -16.01882 -15.93046 -15.49893 -15.33155 -15.19856 -15.02695 -14.70028 -14.29197 -14.02821 -13.76474 -13.15324 -13.12231 -12.94843 -12.80016 -12.78729 -12.70289 -12.65895 -12.60077 -12.36409 -12.29352 -12.12984 -11.74390 -11.33938 -11.05055 -10.63642 -10.07851 -10.01867 -9.85203 -9.61516 -9.10896 -8.22088 -6.31905 -1.04371 -0.50608 0.58192 1.41352 1.42181 1.55513 1.57694 1.75442 2.02610 2.39822 2.94725 3.02677 3.09195 3.11090 3.13384 3.21239 3.47793 3.70842 3.89603 3.92786 3.99176 4.08797 4.16253 4.20482 4.27207 4.34363 4.37522 4.50003 4.61445 4.66922 4.77085 4.79961 4.89757 4.96151 4.98098 5.12219 5.14058 5.18528 5.21474 5.42603 5.59705 5.63052 6.00848 6.14821 6.22944 6.34836 6.54544 6.70936 6.83798 7.05866 7.38031 8.89424 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023573 B = 0.002708 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.503079 B =10335.476124 C =10633.921770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.533 5.533 11 C 0.035 3.965 12 C 0.107 3.893 13 N -0.607 5.607 14 C 0.557 3.443 15 O -0.559 6.559 16 C -0.131 4.131 17 C -0.050 4.050 18 C -0.094 4.094 19 C -0.058 4.058 20 C 0.052 3.948 21 N -0.439 5.439 22 C 0.083 3.917 23 C 0.076 3.924 24 N -0.456 5.456 25 C 0.085 3.915 26 C 0.129 3.871 27 C 0.057 3.943 28 H 0.264 0.736 29 H -0.046 1.046 30 H 0.014 0.986 31 H 0.007 0.993 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.173 0.827 36 H 0.192 0.808 37 H 0.170 0.830 38 H 0.221 0.779 39 H 0.203 0.797 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.002 0.998 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 -25.751 1.166 26.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.258 5.258 11 C -0.094 4.094 12 C -0.015 4.015 13 N -0.339 5.339 14 C 0.346 3.654 15 O -0.438 6.438 16 C -0.136 4.136 17 C -0.070 4.070 18 C -0.113 4.113 19 C -0.077 4.077 20 C -0.071 4.071 21 N -0.153 5.153 22 C -0.093 4.093 23 C -0.099 4.099 24 N -0.170 5.170 25 C -0.040 4.040 26 C 0.006 3.994 27 C -0.072 4.072 28 H 0.073 0.927 29 H -0.028 1.028 30 H 0.032 0.968 31 H 0.026 0.974 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.190 0.810 36 H 0.209 0.791 37 H 0.187 0.813 38 H 0.237 0.763 39 H 0.220 0.780 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.020 0.980 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.022 -25.444 1.249 25.964 hybrid contribution -0.676 1.313 -1.368 2.013 sum 4.346 -24.130 -0.119 24.519 Atomic orbital electron populations 1.70097 1.07769 1.27843 1.51863 1.25911 0.95718 1.03228 0.94811 0.85335 0.79108 0.78586 0.77606 1.18498 1.20844 1.20261 1.21490 0.93775 0.90863 1.49880 0.91495 1.19392 0.90037 0.88872 0.93511 1.62048 1.26919 1.03019 1.33766 1.22582 0.95941 0.90125 1.00737 1.22575 0.91204 0.99327 0.88352 1.48185 1.46803 1.07908 1.31054 1.18391 0.80209 0.84088 0.82700 1.90751 1.41353 1.86692 1.24992 1.19782 1.05503 0.93704 0.94612 1.22230 0.93091 0.98705 0.92989 1.21441 0.96050 0.90886 1.02896 1.21411 0.96218 1.01446 0.88669 1.19881 0.99977 0.90533 0.96752 1.68783 1.12925 1.29764 1.03816 1.24763 0.93747 0.97721 0.93038 1.24841 0.92491 0.90114 1.02445 1.68824 1.12521 1.32838 1.02803 1.19522 0.98945 0.94167 0.91324 1.21752 0.94635 0.80994 1.01974 1.22339 0.95364 0.99577 0.89904 0.92710 1.02830 0.96811 0.97423 0.88600 0.86502 0.87416 0.80962 0.79130 0.81282 0.76307 0.78012 0.88992 0.89880 0.97961 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.04 13.29 21.45 0.28 -55.76 16 2 C 0.00 0.07 5.46 84.65 0.46 0.54 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.52 -29.11 8.41 25.60 0.22 -28.89 16 8 H 0.07 3.63 7.13 -2.91 -0.02 3.61 16 9 C 0.21 10.96 4.72 85.56 0.40 11.36 16 10 N -0.53 -22.39 4.62 -898.87 -4.15 -26.54 16 11 C 0.04 1.18 5.62 86.39 0.49 1.66 16 12 C 0.11 2.62 4.88 86.35 0.42 3.04 16 13 N -0.61 -18.58 3.00 -820.82 -2.46 -21.05 16 14 C 0.56 18.52 7.28 86.69 0.63 19.15 16 15 O -0.56 -22.97 15.37 -4.02 -0.06 -23.03 16 16 C -0.13 -3.49 5.37 -19.87 -0.11 -3.60 16 17 C -0.05 -0.81 7.36 22.55 0.17 -0.65 16 18 C -0.09 -0.99 9.93 21.98 0.22 -0.77 16 19 C -0.06 -0.83 9.97 22.40 0.22 -0.61 16 20 C 0.05 1.15 6.59 40.28 0.27 1.42 16 21 N -0.44 -8.85 10.46 -188.16 -1.97 -10.82 16 22 C 0.08 1.28 11.21 85.11 0.95 2.23 16 23 C 0.08 1.51 11.22 85.09 0.95 2.47 16 24 N -0.46 -13.76 9.08 -187.41 -1.70 -15.46 16 25 C 0.08 2.38 6.57 40.58 0.27 2.65 16 26 C 0.13 4.31 6.64 86.50 0.57 4.88 16 27 C 0.06 2.32 5.47 86.54 0.47 2.79 16 28 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 29 H -0.05 -2.71 8.12 -2.39 -0.02 -2.73 16 30 H 0.01 0.77 7.97 -2.39 -0.02 0.75 16 31 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.10 2.95 7.99 -2.39 -0.02 2.93 16 33 H 0.12 2.21 4.54 -2.39 -0.01 2.20 16 34 H 0.11 2.13 7.99 -2.39 -0.02 2.11 16 35 H 0.17 1.97 5.81 -2.91 -0.02 1.95 16 36 H 0.19 0.29 8.06 -2.91 -0.02 0.26 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.22 1.14 8.06 -2.91 -0.02 1.11 16 39 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 40 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.08 2.90 7.04 -2.39 -0.02 2.88 16 42 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.08 3.53 6.67 -2.39 -0.02 3.52 16 Total: -1.00 -82.95 351.61 -0.39 -83.33 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.04 Total: 5.66 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 6.61 Total: 17.68 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -10.00 Total: -129.62 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.03 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -82.95 -0.39 -83.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.835 kcal (2) G-P(sol) polarization free energy of solvation -82.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds