Wall clock time and date at job start Tue Mar 31 2020 14:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99848 * 2 1 4 4 H 1.48501 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47538 * 299.99921 * 3 2 1 6 6 H 1.48501 * 109.47464 * 59.99769 * 3 2 1 7 7 C 1.37870 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00239 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47306 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99743 * 169.99924 * 10 9 7 12 12 C 1.53246 * 109.33783 * 187.25173 * 11 10 9 13 13 N 1.47076 * 108.51913 * 306.16748 * 12 11 10 14 14 C 1.34778 * 120.88418 * 231.18401 * 13 12 11 15 15 O 1.21555 * 119.99786 * 5.79184 * 14 13 12 16 16 C 1.47861 * 120.00275 * 185.78951 * 14 13 12 17 17 C 1.40619 * 119.75586 * 219.97675 * 16 14 13 18 18 C 1.35724 * 120.83628 * 179.97438 * 17 16 14 19 19 C 1.40705 * 120.08280 * 0.02562 * 18 17 16 20 20 N 1.33803 * 120.85779 * 179.97438 * 19 18 17 21 21 C 1.31328 * 119.75889 * 180.02562 * 20 19 18 22 22 C 1.39757 * 120.71369 * 0.04572 * 21 20 19 23 23 N 1.31275 * 120.67490 * 359.97218 * 22 21 20 24 24 C 1.33822 * 119.73583 * 0.02562 * 23 22 21 25 25 C 1.38408 * 119.75665 * 40.23349 * 16 14 13 26 26 C 1.47080 * 118.23532 * 51.46314 * 13 12 11 27 27 C 1.46902 * 110.99841 * 294.29694 * 10 9 7 28 28 H 0.96996 * 120.00158 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47349 * 59.99529 * 9 7 2 30 30 H 1.09000 * 109.46579 * 299.99835 * 9 7 2 31 31 H 1.08999 * 109.49702 * 67.29210 * 11 10 9 32 32 H 1.08994 * 109.51690 * 307.22006 * 11 10 9 33 33 H 1.09003 * 109.62426 * 186.45895 * 12 11 10 34 34 H 1.09001 * 109.62943 * 65.88229 * 12 11 10 35 35 H 1.08000 * 119.57932 * 359.97438 * 17 16 14 36 36 H 1.08005 * 119.96151 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.64257 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.66053 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.25411 * 0.02562 * 25 16 14 40 40 H 1.09001 * 109.63408 * 68.24890 * 26 13 12 41 41 H 1.09011 * 109.62685 * 188.82837 * 26 13 12 42 42 H 1.08996 * 109.49390 * 292.70817 * 27 10 9 43 43 H 1.09000 * 109.49279 * 52.78747 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5213 -4.8934 0.2387 12 6 2.5640 -6.0031 0.4115 13 7 3.4617 -5.9861 -0.7534 14 6 3.7120 -7.1122 -1.4504 15 8 3.1138 -8.1366 -1.1854 16 6 4.7144 -7.1016 -2.5374 17 6 4.4623 -7.8092 -3.7261 18 6 5.3668 -7.8139 -4.7380 19 6 6.5755 -7.1058 -4.6069 20 7 7.4783 -7.1003 -5.5945 21 6 8.5997 -6.4325 -5.4488 22 6 8.8623 -5.7265 -4.2716 23 7 7.9927 -5.7169 -3.2883 24 6 6.8426 -6.3898 -3.4127 25 6 5.8961 -6.3995 -2.3752 26 6 4.0838 -4.7089 -1.1339 27 6 2.9768 -3.6490 -1.2495 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6242 -2.5566 0.8903 31 1 0.8797 -5.1263 -0.6111 32 1 0.9160 -4.8194 1.1420 33 1 2.0633 -6.9693 0.4739 34 1 3.1397 -5.8264 1.3201 35 1 3.5373 -8.3558 -3.8352 36 1 5.1588 -8.3626 -5.6448 37 1 9.3269 -6.4290 -6.2474 38 1 9.7902 -5.1834 -4.1698 39 1 6.0878 -5.8611 -1.4588 40 1 4.8028 -4.4101 -0.3711 41 1 4.5887 -4.8190 -2.0938 42 1 2.3149 -3.8992 -2.0785 43 1 3.4272 -2.6721 -1.4252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:52 Heat of formation + Delta-G solvation = 56.975995 kcal Electronic energy + Delta-G solvation = -26981.868393 eV Core-core repulsion = 23220.682994 eV Total energy + Delta-G solvation = -3761.185399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79200 -40.25017 -37.87820 -37.12299 -35.20818 -34.51278 -32.55523 -31.61251 -31.15184 -30.36197 -28.33560 -26.30000 -25.42318 -24.68851 -23.50903 -22.71208 -22.16490 -21.07717 -19.62786 -18.80175 -18.06876 -17.31647 -16.74929 -16.42766 -15.94811 -15.52882 -15.14437 -15.09095 -14.82875 -14.54885 -14.46965 -14.25784 -13.92702 -13.73534 -13.60798 -12.98643 -12.74677 -12.45233 -12.16592 -12.11098 -12.01564 -11.97992 -11.90742 -11.34623 -11.13235 -11.01220 -10.79861 -10.67986 -10.56137 -10.02143 -9.89719 -9.48022 -9.34535 -9.29906 -8.88693 -8.59987 -8.49050 -7.38504 -6.09467 -4.11629 -0.27041 0.10431 1.48625 2.11593 2.78066 2.98551 3.26591 3.34495 3.38378 3.59962 3.66808 3.74843 3.87425 4.24853 4.36132 4.41566 4.56816 4.67670 4.74896 4.84587 4.97106 5.18649 5.25841 5.29164 5.33164 5.41546 5.47434 5.58382 5.62997 5.68241 5.75614 5.79638 5.90962 5.94563 6.21096 6.22667 6.38075 6.41343 6.57157 6.86835 7.16955 7.23520 7.33134 7.37000 7.70570 7.96585 8.03626 8.07451 8.43060 8.95788 9.53224 11.01380 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.003223 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.019192 B = 8684.260609 C =10289.369116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.118 3.882 13 N -0.597 5.597 14 C 0.557 3.443 15 O -0.538 6.538 16 C -0.099 4.099 17 C -0.053 4.053 18 C -0.088 4.088 19 C 0.090 3.910 20 N -0.428 5.428 21 C 0.082 3.918 22 C 0.074 3.926 23 N -0.416 5.416 24 C 0.071 3.929 25 C -0.045 4.045 26 C 0.099 3.901 27 C 0.051 3.949 28 H 0.261 0.739 29 H -0.009 1.009 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.153 0.847 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.026 0.974 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.440 -14.151 -9.266 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.004 4.004 13 N -0.330 5.330 14 C 0.344 3.656 15 O -0.416 6.416 16 C -0.104 4.104 17 C -0.074 4.074 18 C -0.107 4.107 19 C -0.033 4.033 20 N -0.142 5.142 21 C -0.094 4.094 22 C -0.102 4.102 23 N -0.130 5.130 24 C -0.052 4.052 25 C -0.065 4.065 26 C -0.024 4.024 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.193 0.807 38 H 0.194 0.806 39 H 0.170 0.830 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.044 0.956 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.048 -14.549 -8.619 22.636 hybrid contribution -0.083 1.045 -0.730 1.278 sum 14.965 -13.503 -9.349 22.219 Atomic orbital electron populations 1.69963 1.06100 1.26790 1.50794 1.24993 0.94861 0.99383 0.95334 0.86448 0.80067 0.83385 0.77558 1.19602 1.21121 1.20956 1.21169 0.93505 0.89840 1.50325 0.91730 1.19734 0.89980 0.87140 0.96278 1.62097 1.28122 1.02751 1.33092 1.22409 0.94905 0.90460 1.01120 1.21846 0.91724 0.99845 0.86992 1.48168 1.46447 1.08311 1.30028 1.18172 0.82203 0.83623 0.81569 1.90779 1.50662 1.31876 1.68320 1.20050 0.95297 0.99207 0.95886 1.20948 0.99812 0.95764 0.90865 1.20690 0.91148 0.98853 1.00008 1.19667 0.95407 0.97351 0.90903 1.68733 1.01539 1.15770 1.28134 1.24156 0.94679 0.92411 0.98108 1.24116 0.99223 0.96870 0.89970 1.68693 1.00709 1.14375 1.29180 1.19394 0.93791 0.97363 0.94683 1.21446 0.91013 0.95640 0.98362 1.22485 0.96616 0.82448 1.00825 1.22415 0.94986 0.98958 0.91477 0.92894 0.99087 0.94940 0.95403 0.89847 0.89109 0.90483 0.83697 0.83606 0.80652 0.80557 0.82990 0.90050 0.89768 0.95584 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -13.74 8.41 -34.44 -0.29 -14.03 16 8 H 0.06 1.71 7.13 -52.48 -0.37 1.33 16 9 C 0.19 4.85 4.72 -4.98 -0.02 4.83 16 10 N -0.54 -10.89 4.62 -235.47 -1.09 -11.98 16 11 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 12 C 0.12 1.76 6.61 -3.60 -0.02 1.74 16 13 N -0.60 -8.81 3.00 -173.28 -0.52 -9.33 16 14 C 0.56 8.23 7.32 -12.32 -0.09 8.14 16 15 O -0.54 -9.32 16.37 5.32 0.09 -9.24 16 16 C -0.10 -1.24 5.13 -105.00 -0.54 -1.77 16 17 C -0.05 -0.58 9.52 -39.58 -0.38 -0.96 16 18 C -0.09 -0.89 9.95 -39.55 -0.39 -1.28 16 19 C 0.09 1.03 6.59 -84.72 -0.56 0.47 16 20 N -0.43 -4.41 10.46 -10.74 -0.11 -4.52 16 21 C 0.08 0.59 11.21 -17.20 -0.19 0.40 16 22 C 0.07 0.55 11.21 -17.22 -0.19 0.36 16 23 N -0.42 -4.56 10.46 -10.81 -0.11 -4.67 16 24 C 0.07 0.84 6.58 -84.82 -0.56 0.28 16 25 C -0.04 -0.52 7.36 -38.69 -0.28 -0.81 16 26 C 0.10 1.41 5.02 -3.36 -0.02 1.39 16 27 C 0.05 0.92 5.47 -3.46 -0.02 0.90 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 30 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 33 H 0.09 1.33 7.04 -51.93 -0.37 0.96 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.15 1.43 8.05 -52.49 -0.42 1.00 16 36 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.18 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.15 1.69 6.51 -52.48 -0.34 1.35 16 40 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 41 H 0.08 1.07 4.92 -51.92 -0.26 0.81 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 1.90 6.67 -51.93 -0.35 1.55 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -33.22 354.60 -9.81 -43.03 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.45 Total: -1.07 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -3.68 Total: 1.78 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -1.10 Total: -55.87 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.22 -9.81 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.003 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds