Wall clock time and date at job start Tue Mar 31 2020 14:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99848 * 2 1 4 4 H 1.48501 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47538 * 299.99921 * 3 2 1 6 6 H 1.48501 * 109.47464 * 59.99769 * 3 2 1 7 7 C 1.37870 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00239 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47306 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99743 * 169.99924 * 10 9 7 12 12 C 1.53246 * 109.33783 * 187.25173 * 11 10 9 13 13 N 1.47076 * 108.51913 * 306.16748 * 12 11 10 14 14 C 1.34778 * 120.88418 * 231.18401 * 13 12 11 15 15 O 1.21555 * 119.99786 * 5.79184 * 14 13 12 16 16 C 1.47861 * 120.00275 * 185.78951 * 14 13 12 17 17 C 1.40619 * 119.75586 * 219.97675 * 16 14 13 18 18 C 1.35724 * 120.83628 * 179.97438 * 17 16 14 19 19 C 1.40705 * 120.08280 * 0.02562 * 18 17 16 20 20 N 1.33803 * 120.85779 * 179.97438 * 19 18 17 21 21 C 1.31328 * 119.75889 * 180.02562 * 20 19 18 22 22 C 1.39757 * 120.71369 * 0.04572 * 21 20 19 23 23 N 1.31275 * 120.67490 * 359.97218 * 22 21 20 24 24 C 1.33822 * 119.73583 * 0.02562 * 23 22 21 25 25 C 1.38408 * 119.75665 * 40.23349 * 16 14 13 26 26 C 1.47080 * 118.23532 * 51.46314 * 13 12 11 27 27 C 1.46902 * 110.99841 * 294.29694 * 10 9 7 28 28 H 0.96996 * 120.00158 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47349 * 59.99529 * 9 7 2 30 30 H 1.09000 * 109.46579 * 299.99835 * 9 7 2 31 31 H 1.08999 * 109.49702 * 67.29210 * 11 10 9 32 32 H 1.08994 * 109.51690 * 307.22006 * 11 10 9 33 33 H 1.09003 * 109.62426 * 186.45895 * 12 11 10 34 34 H 1.09001 * 109.62943 * 65.88229 * 12 11 10 35 35 H 1.08000 * 119.57932 * 359.97438 * 17 16 14 36 36 H 1.08005 * 119.96151 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.64257 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.66053 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.25411 * 0.02562 * 25 16 14 40 40 H 1.09001 * 109.63408 * 68.24890 * 26 13 12 41 41 H 1.09011 * 109.62685 * 188.82837 * 26 13 12 42 42 H 1.08996 * 109.49390 * 292.70817 * 27 10 9 43 43 H 1.09000 * 109.49279 * 52.78747 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5213 -4.8934 0.2387 12 6 2.5640 -6.0031 0.4115 13 7 3.4617 -5.9861 -0.7534 14 6 3.7120 -7.1122 -1.4504 15 8 3.1138 -8.1366 -1.1854 16 6 4.7144 -7.1016 -2.5374 17 6 4.4623 -7.8092 -3.7261 18 6 5.3668 -7.8139 -4.7380 19 6 6.5755 -7.1058 -4.6069 20 7 7.4783 -7.1003 -5.5945 21 6 8.5997 -6.4325 -5.4488 22 6 8.8623 -5.7265 -4.2716 23 7 7.9927 -5.7169 -3.2883 24 6 6.8426 -6.3898 -3.4127 25 6 5.8961 -6.3995 -2.3752 26 6 4.0838 -4.7089 -1.1339 27 6 2.9768 -3.6490 -1.2495 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6242 -2.5566 0.8903 31 1 0.8797 -5.1263 -0.6111 32 1 0.9160 -4.8194 1.1420 33 1 2.0633 -6.9693 0.4739 34 1 3.1397 -5.8264 1.3201 35 1 3.5373 -8.3558 -3.8352 36 1 5.1588 -8.3626 -5.6448 37 1 9.3269 -6.4290 -6.2474 38 1 9.7902 -5.1834 -4.1698 39 1 6.0878 -5.8611 -1.4588 40 1 4.8028 -4.4101 -0.3711 41 1 4.5887 -4.8190 -2.0938 42 1 2.3149 -3.8992 -2.0785 43 1 3.4272 -2.6721 -1.4252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:51 Heat of formation + Delta-G solvation = 33.452100 kcal Electronic energy + Delta-G solvation = -26982.888466 eV Core-core repulsion = 23220.682994 eV Total energy + Delta-G solvation = -3762.205471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.55259 -41.38621 -39.19635 -38.10379 -36.18226 -35.80142 -34.46625 -32.75485 -31.92203 -31.47026 -30.01564 -27.64736 -26.52152 -25.59023 -24.83296 -23.95238 -23.42087 -22.46123 -20.80875 -19.62126 -19.05146 -18.50907 -18.16812 -17.71480 -17.04332 -16.72058 -16.49171 -16.10777 -16.03822 -15.78379 -15.53720 -15.39780 -15.31521 -15.01104 -14.71087 -14.33392 -14.13390 -13.60802 -13.53737 -13.16158 -12.95524 -12.90865 -12.85567 -12.74158 -12.72376 -12.63541 -12.38880 -12.32560 -12.16197 -11.80455 -11.28835 -11.16677 -10.63449 -10.16485 -10.11629 -9.88592 -9.69255 -9.10791 -8.21188 -6.31451 -1.02529 -0.62542 0.70867 1.24118 1.42293 1.43349 1.56443 1.68680 1.96701 2.40352 2.86586 2.92086 3.06890 3.11155 3.16479 3.19662 3.31028 3.70382 3.85413 3.87925 3.95886 3.99178 4.13510 4.17794 4.20445 4.35937 4.43018 4.46500 4.57921 4.67015 4.67835 4.79307 4.85146 4.88563 4.95675 5.02273 5.14948 5.16575 5.20139 5.34220 5.49257 5.63098 6.00660 6.12880 6.20140 6.27386 6.52875 6.66218 6.84487 6.86511 7.38696 8.90405 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.003223 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.019192 B = 8684.260609 C =10289.369116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.537 5.537 11 C 0.042 3.958 12 C 0.126 3.874 13 N -0.601 5.601 14 C 0.561 3.439 15 O -0.567 6.567 16 C -0.114 4.114 17 C -0.062 4.062 18 C -0.082 4.082 19 C 0.075 3.925 20 N -0.452 5.452 21 C 0.097 3.903 22 C 0.086 3.914 23 N -0.446 5.446 24 C 0.052 3.948 25 C -0.043 4.043 26 C 0.115 3.885 27 C 0.051 3.949 28 H 0.264 0.736 29 H -0.042 1.042 30 H 0.008 0.992 31 H 0.015 0.985 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.165 0.835 37 H 0.222 0.778 38 H 0.220 0.780 39 H 0.155 0.845 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.013 0.987 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.937 -13.930 -10.474 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.559 4.559 8 H 0.088 0.912 9 C 0.082 3.918 10 N -0.262 5.262 11 C -0.087 4.087 12 C 0.004 3.996 13 N -0.332 5.332 14 C 0.350 3.650 15 O -0.447 6.447 16 C -0.119 4.119 17 C -0.083 4.083 18 C -0.101 4.101 19 C -0.048 4.048 20 N -0.166 5.166 21 C -0.079 4.079 22 C -0.091 4.091 23 N -0.160 5.160 24 C -0.070 4.070 25 C -0.063 4.063 26 C -0.008 4.008 27 C -0.078 4.078 28 H 0.073 0.927 29 H -0.024 1.024 30 H 0.026 0.974 31 H 0.034 0.966 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.167 0.833 36 H 0.182 0.818 37 H 0.239 0.761 38 H 0.236 0.764 39 H 0.172 0.828 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.031 0.969 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.537 -14.357 -9.817 25.419 hybrid contribution -1.010 0.961 -0.474 1.473 sum 17.527 -13.396 -10.291 24.342 Atomic orbital electron populations 1.70097 1.07863 1.27861 1.51848 1.25928 0.95690 1.03299 0.94809 0.85326 0.79207 0.78506 0.77541 1.18226 1.20703 1.20605 1.21486 0.93839 0.90689 1.49887 0.91232 1.19383 0.90057 0.88861 0.93493 1.62030 1.27070 1.02707 1.34348 1.22459 0.95635 0.89891 1.00722 1.21748 0.91306 0.98757 0.87754 1.48209 1.46428 1.08591 1.30012 1.18488 0.82069 0.82946 0.81512 1.90755 1.52002 1.32811 1.69165 1.19872 0.95222 1.01005 0.95805 1.20998 1.00413 0.96080 0.90773 1.20878 0.90626 0.98351 1.00234 1.19854 0.96093 0.97619 0.91226 1.68805 1.02594 1.17187 1.28001 1.24997 0.94059 0.89916 0.98952 1.24935 0.99586 0.95581 0.88971 1.68721 1.01100 1.15291 1.30860 1.19453 0.94437 0.98262 0.94871 1.21435 0.90852 0.95411 0.98617 1.22389 0.95041 0.80900 1.02436 1.22430 0.95481 0.99864 0.89985 0.92733 1.02394 0.97435 0.96647 0.89534 0.88570 0.89063 0.83272 0.81783 0.76150 0.76374 0.82768 0.88670 0.87879 0.96875 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.79 13.29 21.44 0.28 -55.50 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 43.17 29.54 68.60 2.03 45.19 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.52 -28.54 8.41 25.60 0.22 -28.33 16 8 H 0.07 3.67 7.13 -2.91 -0.02 3.65 16 9 C 0.21 10.89 4.72 85.56 0.40 11.29 16 10 N -0.54 -22.36 4.62 -898.88 -4.15 -26.52 16 11 C 0.04 1.50 5.62 86.39 0.49 1.98 16 12 C 0.13 3.75 6.61 86.35 0.57 4.32 16 13 N -0.60 -17.53 3.00 -820.40 -2.46 -19.99 16 14 C 0.56 16.56 7.32 86.79 0.63 17.20 16 15 O -0.57 -19.81 16.37 -3.89 -0.06 -19.87 16 16 C -0.11 -2.82 5.13 -20.11 -0.10 -2.92 16 17 C -0.06 -1.35 9.52 22.27 0.21 -1.13 16 18 C -0.08 -1.58 9.95 22.29 0.22 -1.36 16 19 C 0.07 1.58 6.59 40.32 0.27 1.85 16 20 N -0.45 -8.14 10.46 -187.88 -1.96 -10.11 16 21 C 0.10 1.00 11.21 85.14 0.95 1.96 16 22 C 0.09 0.95 11.21 85.14 0.95 1.91 16 23 N -0.45 -8.74 10.46 -188.12 -1.97 -10.71 16 24 C 0.05 1.15 6.58 40.25 0.27 1.42 16 25 C -0.04 -0.98 7.36 22.85 0.17 -0.82 16 26 C 0.11 3.19 5.02 86.50 0.43 3.62 16 27 C 0.05 1.89 5.47 86.54 0.47 2.36 16 28 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 29 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 30 H 0.01 0.43 7.97 -2.39 -0.02 0.41 16 31 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 3.00 7.99 -2.39 -0.02 2.98 16 33 H 0.10 2.80 7.04 -2.39 -0.02 2.78 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.15 2.97 8.05 -2.91 -0.02 2.95 16 36 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.22 0.10 8.06 -2.91 -0.02 0.08 16 38 H 0.22 0.39 8.06 -2.91 -0.02 0.36 16 39 H 0.15 3.29 6.51 -2.91 -0.02 3.27 16 40 H 0.10 2.44 8.05 -2.39 -0.02 2.42 16 41 H 0.10 2.53 4.92 -2.38 -0.01 2.52 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.09 3.38 6.67 -2.39 -0.02 3.36 16 Total: -1.00 -74.04 354.60 -0.64 -74.69 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.04 Total: 8.97 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 6.62 Total: 13.85 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -10.26 Total: -122.82 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.06 Total: -19.87 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -74.04 -0.64 -74.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.138 kcal (2) G-P(sol) polarization free energy of solvation -74.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds