Wall clock time and date at job start Tue Mar 31 2020 15:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00029 * 2 1 4 4 H 1.48502 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47013 * 299.99867 * 3 2 1 6 6 H 1.48493 * 109.47042 * 59.99839 * 3 2 1 7 7 C 1.37878 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00354 * 359.97438 * 7 2 1 10 10 N 1.46908 * 109.47264 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00089 * 170.00304 * 10 9 7 12 12 C 1.53240 * 109.33706 * 187.25623 * 11 10 9 13 13 N 1.47077 * 108.51828 * 306.16059 * 12 11 10 14 14 C 1.34778 * 120.88311 * 231.18598 * 13 12 11 15 15 O 1.21502 * 120.00065 * 180.89903 * 14 13 12 16 16 C 1.48229 * 119.99880 * 0.90469 * 14 13 12 17 17 C 1.40581 * 119.74826 * 159.65012 * 16 14 13 18 18 N 1.31261 * 120.56939 * 180.02562 * 17 16 14 19 19 C 1.33780 * 119.80588 * 359.97438 * 18 17 16 20 20 C 1.40547 * 120.99201 * 179.97438 * 19 18 17 21 21 C 1.36074 * 119.74840 * 180.02562 * 20 19 18 22 22 C 1.39477 * 121.01780 * 359.72329 * 21 20 19 23 23 C 1.35982 * 120.98319 * 0.56330 * 22 21 20 24 24 C 1.40827 * 119.70385 * 359.44695 * 23 22 21 25 25 N 1.32171 * 119.74912 * 339.67001 * 16 14 13 26 26 C 1.47074 * 118.23571 * 51.46397 * 13 12 11 27 27 C 1.46905 * 110.99684 * 294.30001 * 10 9 7 28 28 H 0.96994 * 119.99937 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47424 * 60.00022 * 9 7 2 30 30 H 1.09003 * 109.47604 * 299.99600 * 9 7 2 31 31 H 1.08994 * 109.49739 * 67.28831 * 11 10 9 32 32 H 1.09007 * 109.48974 * 307.20788 * 11 10 9 33 33 H 1.09005 * 109.62713 * 186.45879 * 12 11 10 34 34 H 1.08999 * 109.63255 * 65.87477 * 12 11 10 35 35 H 1.08002 * 119.71403 * 0.03433 * 17 16 14 36 36 H 1.08001 * 120.11899 * 0.02562 * 20 19 18 37 37 H 1.08001 * 119.48709 * 179.97438 * 21 20 19 38 38 H 1.08005 * 119.50728 * 180.30657 * 22 21 20 39 39 H 1.08004 * 120.15253 * 179.72239 * 23 22 21 40 40 H 1.09009 * 109.62863 * 68.25151 * 26 13 12 41 41 H 1.08999 * 109.63250 * 188.82640 * 26 13 12 42 42 H 1.08991 * 109.49333 * 292.70683 * 27 10 9 43 43 H 1.09000 * 109.49087 * 52.79037 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5212 -4.8935 0.2375 12 6 2.5639 -6.0032 0.4104 13 7 3.4616 -5.9863 -0.7545 14 6 3.7119 -7.1124 -1.4514 15 8 4.4690 -7.0834 -2.4013 16 6 3.0635 -8.3863 -1.0590 17 6 2.9667 -9.4353 -1.9899 18 7 2.3953 -10.5701 -1.6598 19 6 1.9008 -10.7318 -0.4273 20 6 1.2836 -11.9360 -0.0475 21 6 0.7888 -12.0729 1.2127 22 6 0.8888 -11.0364 2.1406 23 6 1.4737 -9.8543 1.8095 24 6 1.9980 -9.6737 0.5150 25 7 2.5805 -8.5272 0.1632 26 6 4.0837 -4.7091 -1.1350 27 6 2.9767 -3.6491 -1.2505 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8902 30 1 0.6248 -2.5572 0.8897 31 1 0.8796 -5.1264 -0.6122 32 1 0.9161 -4.8191 1.1411 33 1 2.0633 -6.9695 0.4728 34 1 3.1395 -5.8265 1.3189 35 1 3.3659 -9.3065 -2.9851 36 1 1.2023 -12.7495 -0.7532 37 1 0.3149 -12.9999 1.5000 38 1 0.4920 -11.1732 3.1358 39 1 1.5399 -9.0591 2.5373 40 1 4.8028 -4.4104 -0.3721 41 1 4.5885 -4.8192 -2.0948 42 1 2.3149 -3.8993 -2.0795 43 1 3.4272 -2.6722 -1.4261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:54 Heat of formation + Delta-G solvation = 45.874556 kcal Electronic energy + Delta-G solvation = -27002.030135 eV Core-core repulsion = 23240.363342 eV Total energy + Delta-G solvation = -3761.666793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.79917 -41.10534 -39.14481 -38.31323 -36.52625 -35.75069 -34.38918 -32.52878 -31.85453 -31.58689 -30.06741 -27.66334 -26.66887 -25.79080 -24.60614 -23.93121 -23.30563 -22.51516 -20.78030 -19.58418 -19.48803 -18.57420 -18.16696 -17.56296 -16.99204 -16.79925 -16.62375 -16.08004 -15.94625 -15.80818 -15.46001 -15.41447 -15.35576 -15.05975 -14.70820 -14.40444 -14.15250 -13.89863 -13.24372 -12.99331 -12.95186 -12.91440 -12.80880 -12.75125 -12.71483 -12.60787 -12.37277 -12.23014 -11.95662 -11.70086 -11.55769 -11.27362 -10.63846 -10.15199 -10.11487 -9.85393 -9.62685 -9.10104 -8.21756 -6.31756 -1.15887 -0.71551 0.71170 1.25608 1.41686 1.42389 1.55884 1.65066 1.94505 2.39720 2.58143 2.86695 2.93739 3.04960 3.10808 3.23992 3.36639 3.66192 3.88527 3.95470 4.02871 4.11085 4.19003 4.24068 4.31560 4.35328 4.39818 4.56438 4.75498 4.80310 4.85857 4.89401 4.90700 4.99131 5.09339 5.15070 5.16960 5.20449 5.34631 5.40308 5.63007 5.67922 5.90714 6.00903 6.10600 6.26434 6.41529 6.54490 6.80241 6.83984 7.38166 8.89774 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020933 B = 0.002745 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.306332 B =10198.097186 C =11143.261734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.538 5.538 11 C 0.039 3.961 12 C 0.099 3.901 13 N -0.587 5.587 14 C 0.572 3.428 15 O -0.558 6.558 16 C 0.044 3.956 17 C 0.120 3.880 18 N -0.435 5.435 19 C 0.077 3.923 20 C -0.106 4.106 21 C -0.067 4.067 22 C -0.083 4.083 23 C -0.091 4.091 24 C 0.053 3.947 25 N -0.389 5.389 26 C 0.123 3.877 27 C 0.056 3.944 28 H 0.264 0.736 29 H -0.042 1.042 30 H 0.010 0.990 31 H 0.011 0.989 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.084 0.916 35 H 0.193 0.807 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.177 0.823 39 H 0.156 0.844 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.011 0.989 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.035 -26.685 4.566 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.263 5.263 11 C -0.090 4.090 12 C -0.023 4.023 13 N -0.318 5.318 14 C 0.358 3.642 15 O -0.436 6.436 16 C -0.110 4.110 17 C -0.054 4.054 18 N -0.148 5.148 19 C -0.048 4.048 20 C -0.125 4.125 21 C -0.086 4.086 22 C -0.103 4.103 23 C -0.110 4.110 24 C -0.074 4.074 25 N -0.107 5.107 26 C 0.001 3.999 27 C -0.073 4.073 28 H 0.073 0.927 29 H -0.025 1.025 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.105 0.895 33 H 0.161 0.839 34 H 0.102 0.898 35 H 0.210 0.790 36 H 0.173 0.827 37 H 0.196 0.804 38 H 0.194 0.806 39 H 0.174 0.826 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.030 0.970 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.551 -26.573 4.551 27.080 hybrid contribution -0.512 1.432 -0.998 1.819 sum 2.039 -25.141 3.553 25.473 Atomic orbital electron populations 1.70093 1.07778 1.27865 1.51838 1.25918 0.95723 1.03236 0.94785 0.85323 0.79084 0.78534 0.77621 1.18516 1.20662 1.20392 1.21485 0.93765 0.90824 1.49927 0.91497 1.19384 0.90032 0.88848 0.93491 1.62060 1.27080 1.02971 1.34188 1.22566 0.95941 0.90077 1.00413 1.22946 0.91196 1.01037 0.87128 1.48192 1.45561 1.07982 1.30025 1.17901 0.81218 0.82949 0.82124 1.90758 1.38019 1.85572 1.29290 1.22180 1.00048 0.96339 0.92394 1.23982 0.93103 0.87195 1.01114 1.68840 1.07298 1.21641 1.17059 1.20280 0.97841 0.96687 0.90002 1.21125 0.97747 0.94980 0.98624 1.21646 0.94949 1.00623 0.91415 1.21575 0.95538 0.91305 1.01901 1.21222 0.96902 1.00164 0.92688 1.20194 0.99783 0.89972 0.97439 1.68463 1.05239 1.21078 1.15935 1.21923 0.94800 0.80672 1.02473 1.22372 0.95333 0.99623 0.89975 0.92693 1.02463 0.97238 0.97024 0.89486 0.83913 0.89799 0.79007 0.82708 0.80436 0.80591 0.82635 0.89407 0.88478 0.97025 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.17 13.29 21.45 0.28 -55.89 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.52 -29.26 8.41 25.60 0.22 -29.05 16 8 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 9 C 0.21 11.12 4.72 85.55 0.40 11.52 16 10 N -0.54 -23.28 4.62 -898.88 -4.15 -27.43 16 11 C 0.04 1.41 5.62 86.38 0.49 1.90 16 12 C 0.10 2.94 6.13 86.35 0.53 3.47 16 13 N -0.59 -18.71 3.00 -820.03 -2.46 -21.17 16 14 C 0.57 18.04 7.64 86.90 0.66 18.70 16 15 O -0.56 -19.65 15.96 -3.72 -0.06 -19.71 16 16 C 0.04 1.21 6.50 42.32 0.28 1.48 16 17 C 0.12 2.98 10.75 85.35 0.92 3.90 16 18 N -0.44 -10.33 10.45 -187.20 -1.96 -12.28 16 19 C 0.08 1.60 6.60 40.35 0.27 1.87 16 20 C -0.11 -1.37 9.98 22.33 0.22 -1.14 16 21 C -0.07 -0.44 9.95 22.06 0.22 -0.22 16 22 C -0.08 -0.60 9.95 22.04 0.22 -0.38 16 23 C -0.09 -1.25 9.99 22.38 0.22 -1.02 16 24 C 0.05 1.11 6.60 40.49 0.27 1.38 16 25 N -0.39 -9.70 6.42 -177.28 -1.14 -10.84 16 26 C 0.12 4.07 6.63 86.50 0.57 4.64 16 27 C 0.06 2.22 5.47 86.54 0.47 2.70 16 28 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 29 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 30 H 0.01 0.54 7.97 -2.39 -0.02 0.52 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 3.00 7.99 -2.38 -0.02 2.98 16 33 H 0.14 3.88 4.06 -53.30 -0.22 3.66 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.19 4.21 7.76 -2.91 -0.02 4.19 16 36 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 38 H 0.18 0.02 8.06 -2.91 -0.02 -0.01 16 39 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 41 H 0.10 3.10 7.06 -2.39 -0.02 3.08 16 42 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.09 3.60 6.67 -2.39 -0.02 3.59 16 Total: -1.00 -72.54 354.84 -0.21 -72.75 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.83 Total: 8.23 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 6.42 Total: 20.27 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -9.42 Total: -127.61 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.06 Total: -19.71 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.54 -0.21 -72.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.625 kcal (2) G-P(sol) polarization free energy of solvation -72.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds