Wall clock time and date at job start Tue Mar 31 2020 15:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35341 * 126.75090 * 125.00400 * 10 9 7 12 12 N 1.35312 * 106.17598 * 179.97438 * 11 10 9 13 13 C 1.46503 * 125.86998 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47176 * 124.99827 * 13 12 11 15 15 O 1.21279 * 119.99723 * 0.02562 * 14 13 12 16 16 N 1.34771 * 119.99973 * 179.97438 * 14 13 12 17 17 C 1.47244 * 121.34800 * 180.02562 * 16 14 13 18 18 C 1.52787 * 107.89604 * 115.67710 * 17 16 14 19 19 C 1.50592 * 110.86071 * 47.41355 * 18 17 16 20 20 C 1.38988 * 117.61345 * 160.31925 * 19 18 17 21 21 C 1.37910 * 120.58721 * 179.63972 * 20 19 18 22 22 C 1.38266 * 119.82323 * 359.90143 * 21 20 19 23 23 C 1.37957 * 119.71990 * 0.23232 * 22 21 20 24 24 C 1.37674 * 122.87493 * 340.24527 * 19 18 17 25 25 C 1.46682 * 121.35108 * 359.72011 * 16 14 13 26 26 N 1.28713 * 108.26343 * 359.97438 * 12 11 10 27 27 N 1.28637 * 110.17796 * 359.72483 * 26 12 11 28 28 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.08001 * 126.91742 * 0.02562 * 11 10 9 32 32 H 1.09001 * 109.47441 * 244.99784 * 13 12 11 33 33 H 1.09003 * 109.46882 * 4.99870 * 13 12 11 34 34 H 1.08998 * 109.77403 * 235.27528 * 17 16 14 35 35 H 1.09000 * 109.77550 * 356.07612 * 17 16 14 36 36 H 1.09003 * 109.20005 * 167.77008 * 18 17 16 37 37 H 1.09005 * 109.19896 * 287.10519 * 18 17 16 38 38 H 1.07993 * 119.70302 * 359.58464 * 20 19 18 39 39 H 1.07991 * 120.08537 * 179.91369 * 21 20 19 40 40 H 1.07999 * 120.13989 * 180.20329 * 22 21 20 41 41 H 1.08001 * 119.74888 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.43827 * 344.41453 * 25 16 14 43 43 H 1.09005 * 109.44031 * 104.28915 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.8739 -3.1729 -0.8729 12 7 5.0378 -4.4572 -0.4798 13 6 5.8851 -5.4549 -1.1377 14 6 6.8531 -6.0308 -0.1364 15 8 6.8363 -5.6461 1.0136 16 7 7.7365 -6.9740 -0.5188 17 6 8.6950 -7.5573 0.4348 18 6 8.3665 -9.0422 0.5816 19 6 8.1776 -9.6855 -0.7669 20 6 8.2899 -11.0688 -0.8421 21 6 8.1210 -11.7222 -2.0449 22 6 7.8353 -10.9972 -3.1870 23 6 7.7259 -9.6238 -3.1159 24 6 7.9010 -8.9645 -1.9066 25 6 7.7778 -7.4659 -1.9000 26 7 4.3212 -4.6518 0.5716 27 7 3.7028 -3.5707 0.8934 28 1 -0.4849 0.8400 0.0004 29 1 3.8786 -0.6821 -0.8838 30 1 3.8711 -0.6785 0.8962 31 1 5.3371 -2.6900 -1.7206 32 1 5.2613 -6.2529 -1.5404 33 1 6.4395 -4.9827 -1.9488 34 1 9.7101 -7.4399 0.0556 35 1 8.6018 -7.0617 1.4011 36 1 9.1829 -9.5399 1.1049 37 1 7.4500 -9.1510 1.1615 38 1 8.5123 -11.6369 0.0490 39 1 8.2114 -12.7972 -2.0943 40 1 7.6988 -11.5039 -4.1309 41 1 7.5032 -9.0571 -4.0079 42 1 6.8627 -7.1755 -2.4160 43 1 8.6362 -7.0330 -2.4138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603165607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:08 Heat of formation + Delta-G solvation = 102.522724 kcal Electronic energy + Delta-G solvation = -26269.381676 eV Core-core repulsion = 22510.171332 eV Total energy + Delta-G solvation = -3759.210344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.59742 -40.93641 -39.39863 -36.51366 -34.59464 -33.60279 -32.98756 -31.89538 -31.23741 -30.17674 -28.64425 -27.68881 -26.17977 -24.26536 -23.10330 -22.75285 -21.98700 -21.12187 -20.24785 -19.03177 -17.84613 -17.39273 -16.76563 -16.64113 -16.39489 -15.76385 -15.67123 -15.22408 -15.18648 -14.54332 -14.34510 -14.09248 -13.94085 -13.76962 -13.62101 -13.35006 -13.03726 -12.78071 -12.60931 -12.56731 -12.14098 -12.03787 -11.96136 -11.55215 -11.21438 -11.07927 -10.59869 -10.54597 -10.37932 -10.05477 -9.79455 -9.40179 -9.32156 -9.27571 -9.10688 -9.04547 -8.49590 -8.20756 -5.95852 -3.93493 0.84368 0.89707 1.98672 2.18004 2.39787 2.81170 3.24407 3.34450 3.43063 3.45395 3.48771 3.87738 4.07562 4.23243 4.35606 4.38778 4.49857 4.50179 4.61149 4.65836 4.73562 4.78122 4.86461 5.04040 5.05714 5.08725 5.16571 5.36188 5.37377 5.44199 5.51016 5.64402 5.72613 5.87012 5.97638 6.00491 6.04026 6.09448 6.21608 6.50674 6.82006 6.90350 7.07888 7.14580 7.26313 7.73889 7.77514 8.62116 9.12523 9.30367 9.63339 11.17693 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.029419 B = 0.002196 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.523812 B =12749.138673 C =13051.538708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.505 4.505 8 H 0.076 0.924 9 C 0.059 3.941 10 C 0.042 3.958 11 C -0.083 4.083 12 N -0.299 5.299 13 C 0.105 3.895 14 C 0.509 3.491 15 O -0.496 6.496 16 N -0.615 5.615 17 C 0.115 3.885 18 C -0.100 4.100 19 C -0.065 4.065 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.111 4.111 24 C -0.100 4.100 25 C 0.147 3.853 26 N -0.077 5.077 27 N -0.253 5.253 28 H 0.263 0.737 29 H 0.031 0.969 30 H 0.038 0.962 31 H 0.183 0.817 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.030 -23.197 -9.815 34.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.543 4.543 8 H 0.094 0.906 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.231 4.231 12 N -0.095 5.095 13 C -0.021 4.021 14 C 0.295 3.705 15 O -0.368 6.368 16 N -0.351 5.351 17 C -0.008 4.008 18 C -0.137 4.137 19 C -0.066 4.066 20 C -0.138 4.138 21 C -0.134 4.134 22 C -0.139 4.139 23 C -0.130 4.130 24 C -0.101 4.101 25 C 0.024 3.976 26 N -0.056 5.056 27 N -0.121 5.121 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.200 0.800 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.113 0.887 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 23.415 -23.838 -8.087 34.379 hybrid contribution 0.785 1.266 -1.185 1.903 sum 24.200 -22.572 -9.272 34.367 Atomic orbital electron populations 1.69905 1.06222 1.26761 1.51132 1.24982 0.94772 0.98868 0.94794 0.86828 0.80527 0.83854 0.78422 1.20256 1.21261 1.18873 1.20927 0.88162 0.94849 1.50408 0.90553 1.18157 0.97748 0.84539 0.97534 1.22468 0.95846 0.99082 0.92027 1.23264 1.08382 0.85229 1.06193 1.46589 1.32342 1.09239 1.21297 1.21658 0.92829 0.92952 0.94677 1.20389 0.81013 0.79669 0.89453 1.90853 1.68382 1.58756 1.18824 1.47961 1.36097 1.40198 1.10856 1.21604 0.91728 0.92453 0.94967 1.20868 1.03385 0.95312 0.94162 1.19510 0.98942 0.93550 0.94558 1.21209 1.00697 0.93707 0.98165 1.21124 0.99444 1.00012 0.92826 1.21087 1.00148 0.94050 0.98649 1.21034 1.00244 0.94812 0.96902 1.19622 1.01961 0.94945 0.93566 1.20488 1.03418 0.90709 0.83003 1.78343 1.05575 1.21437 1.00229 1.75135 1.17805 0.96061 1.23080 0.92726 0.95104 0.94376 0.79951 0.85988 0.85212 0.90566 0.88080 0.89358 0.89740 0.85972 0.85943 0.85787 0.85630 0.88666 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.43 13.96 55.43 0.77 -27.66 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.51 -15.01 9.64 -34.44 -0.33 -15.35 16 8 H 0.08 2.53 7.98 -52.49 -0.42 2.11 16 9 C 0.06 1.48 4.62 -29.03 -0.13 1.35 16 10 C 0.04 0.98 6.44 -82.78 -0.53 0.45 16 11 C -0.08 -1.50 11.49 -17.05 -0.20 -1.69 16 12 N -0.30 -5.15 3.20 -62.44 -0.20 -5.35 16 13 C 0.11 1.11 5.36 -5.19 -0.03 1.08 16 14 C 0.51 6.19 7.73 -10.99 -0.08 6.10 16 15 O -0.50 -8.66 15.16 5.56 0.08 -8.57 16 16 N -0.62 -5.24 2.94 -174.63 -0.51 -5.75 16 17 C 0.11 0.89 6.44 -3.75 -0.02 0.86 16 18 C -0.10 -0.68 5.86 -28.04 -0.16 -0.85 16 19 C -0.07 -0.47 5.76 -104.60 -0.60 -1.08 16 20 C -0.12 -0.79 9.59 -39.42 -0.38 -1.16 16 21 C -0.12 -0.69 10.05 -39.69 -0.40 -1.09 16 22 C -0.12 -0.69 10.05 -39.67 -0.40 -1.09 16 23 C -0.11 -0.63 9.62 -39.46 -0.38 -1.01 16 24 C -0.10 -0.66 5.81 -104.77 -0.61 -1.27 16 25 C 0.15 0.80 6.05 -5.26 -0.03 0.76 16 26 N -0.08 -1.70 12.13 60.35 0.73 -0.96 16 27 N -0.25 -6.38 12.40 33.29 0.41 -5.97 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 29 H 0.03 0.70 7.56 -51.93 -0.39 0.31 16 30 H 0.04 0.97 7.19 -51.93 -0.37 0.60 16 31 H 0.18 2.39 8.06 -52.49 -0.42 1.96 16 32 H 0.12 1.00 7.57 -51.93 -0.39 0.60 16 33 H 0.13 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.96 7.07 -51.93 -0.37 0.59 16 36 H 0.09 0.44 8.11 -51.93 -0.42 0.02 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.12 0.62 8.05 -52.49 -0.42 0.19 16 39 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.12 0.48 8.06 -52.49 -0.42 0.05 16 41 H 0.13 0.44 8.05 -52.49 -0.42 0.01 16 42 H 0.10 0.35 6.20 -51.93 -0.32 0.02 16 43 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -40.18 360.74 -7.99 -48.17 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.66 Total: -4.22 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -4.39 Total: -12.10 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 1.21 Total: -45.69 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.57 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -40.18 -7.99 -48.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603165607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.691 kcal (2) G-P(sol) polarization free energy of solvation -40.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds