Wall clock time and date at job start Tue Mar 31 2020 15:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35341 * 126.75090 * 125.00400 * 10 9 7 12 12 N 1.35312 * 106.17598 * 179.97438 * 11 10 9 13 13 C 1.46503 * 125.86998 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47176 * 124.99827 * 13 12 11 15 15 O 1.21279 * 119.99723 * 0.02562 * 14 13 12 16 16 N 1.34771 * 119.99973 * 179.97438 * 14 13 12 17 17 C 1.47244 * 121.34800 * 180.02562 * 16 14 13 18 18 C 1.52787 * 107.89604 * 115.67710 * 17 16 14 19 19 C 1.50592 * 110.86071 * 47.41355 * 18 17 16 20 20 C 1.38988 * 117.61345 * 160.31925 * 19 18 17 21 21 C 1.37910 * 120.58721 * 179.63972 * 20 19 18 22 22 C 1.38266 * 119.82323 * 359.90143 * 21 20 19 23 23 C 1.37957 * 119.71990 * 0.23232 * 22 21 20 24 24 C 1.37674 * 122.87493 * 340.24527 * 19 18 17 25 25 C 1.46682 * 121.35108 * 359.72011 * 16 14 13 26 26 N 1.28713 * 108.26343 * 359.97438 * 12 11 10 27 27 N 1.28637 * 110.17796 * 359.72483 * 26 12 11 28 28 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.08001 * 126.91742 * 0.02562 * 11 10 9 32 32 H 1.09001 * 109.47441 * 244.99784 * 13 12 11 33 33 H 1.09003 * 109.46882 * 4.99870 * 13 12 11 34 34 H 1.08998 * 109.77403 * 235.27528 * 17 16 14 35 35 H 1.09000 * 109.77550 * 356.07612 * 17 16 14 36 36 H 1.09003 * 109.20005 * 167.77008 * 18 17 16 37 37 H 1.09005 * 109.19896 * 287.10519 * 18 17 16 38 38 H 1.07993 * 119.70302 * 359.58464 * 20 19 18 39 39 H 1.07991 * 120.08537 * 179.91369 * 21 20 19 40 40 H 1.07999 * 120.13989 * 180.20329 * 22 21 20 41 41 H 1.08001 * 119.74888 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.43827 * 344.41453 * 25 16 14 43 43 H 1.09005 * 109.44031 * 104.28915 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.8739 -3.1729 -0.8729 12 7 5.0378 -4.4572 -0.4798 13 6 5.8851 -5.4549 -1.1377 14 6 6.8531 -6.0308 -0.1364 15 8 6.8363 -5.6461 1.0136 16 7 7.7365 -6.9740 -0.5188 17 6 8.6950 -7.5573 0.4348 18 6 8.3665 -9.0422 0.5816 19 6 8.1776 -9.6855 -0.7669 20 6 8.2899 -11.0688 -0.8421 21 6 8.1210 -11.7222 -2.0449 22 6 7.8353 -10.9972 -3.1870 23 6 7.7259 -9.6238 -3.1159 24 6 7.9010 -8.9645 -1.9066 25 6 7.7778 -7.4659 -1.9000 26 7 4.3212 -4.6518 0.5716 27 7 3.7028 -3.5707 0.8934 28 1 -0.4849 0.8400 0.0004 29 1 3.8786 -0.6821 -0.8838 30 1 3.8711 -0.6785 0.8962 31 1 5.3371 -2.6900 -1.7206 32 1 5.2613 -6.2529 -1.5404 33 1 6.4395 -4.9827 -1.9488 34 1 9.7101 -7.4399 0.0556 35 1 8.6018 -7.0617 1.4011 36 1 9.1829 -9.5399 1.1049 37 1 7.4500 -9.1510 1.1615 38 1 8.5123 -11.6369 0.0490 39 1 8.2114 -12.7972 -2.0943 40 1 7.6988 -11.5039 -4.1309 41 1 7.5032 -9.0571 -4.0079 42 1 6.8627 -7.1755 -2.4160 43 1 8.6362 -7.0330 -2.4138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603165607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:07 Heat of formation + Delta-G solvation = 73.836700 kcal Electronic energy + Delta-G solvation = -26270.625596 eV Core-core repulsion = 22510.171332 eV Total energy + Delta-G solvation = -3760.454264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.08569 -41.59076 -40.10148 -37.21334 -36.03775 -35.03131 -34.08050 -33.11985 -32.42238 -30.85111 -29.98181 -29.10281 -26.74468 -25.13161 -24.87539 -23.32311 -22.95390 -22.32322 -21.52981 -19.84044 -18.93887 -18.63175 -18.28470 -17.56709 -17.09837 -16.79477 -16.47289 -16.26161 -15.83678 -15.71053 -15.53056 -15.32297 -15.03303 -14.69366 -14.43126 -14.19510 -14.06235 -13.93278 -13.71649 -13.48487 -13.19313 -13.09970 -12.86311 -12.47376 -12.42209 -12.31689 -11.99278 -11.91470 -11.72011 -11.62207 -11.53680 -11.35198 -10.75517 -10.69643 -9.98042 -9.85022 -9.60916 -9.49838 -8.22446 -6.27506 0.41030 0.46714 0.70837 1.29125 1.35720 1.41764 1.47176 1.58687 1.78968 1.89773 2.42864 2.81629 3.11439 3.11799 3.56955 3.64467 3.72863 3.80920 3.90536 3.91383 4.10415 4.17866 4.24130 4.27418 4.34442 4.42844 4.50953 4.56511 4.64600 4.69805 4.74403 4.80846 4.90123 5.06127 5.11107 5.16464 5.27644 5.34109 5.38574 5.55176 5.60829 5.63808 5.65183 5.76136 6.08757 6.18816 6.34746 6.77539 6.90428 7.33904 7.72773 8.95424 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.029419 B = 0.002196 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.523812 B =12749.138673 C =13051.538708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.960 3.040 4 H -0.251 1.251 5 H -0.288 1.288 6 H -0.245 1.245 7 C -0.517 4.517 8 H 0.017 0.983 9 C 0.067 3.933 10 C -0.011 4.011 11 C -0.042 4.042 12 N -0.283 5.283 13 C 0.093 3.907 14 C 0.506 3.494 15 O -0.564 6.564 16 N -0.604 5.604 17 C 0.112 3.888 18 C -0.093 4.093 19 C -0.087 4.087 20 C -0.134 4.134 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.114 4.114 24 C -0.110 4.110 25 C 0.140 3.860 26 N -0.108 5.108 27 N -0.315 5.315 28 H 0.267 0.733 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.244 0.756 32 H 0.152 0.848 33 H 0.192 0.808 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.121 0.879 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.310 -22.834 -13.539 38.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.175 1.175 5 H -0.214 1.214 6 H -0.168 1.168 7 C -0.555 4.555 8 H 0.035 0.965 9 C 0.028 3.972 10 C -0.149 4.149 11 C -0.192 4.192 12 N -0.079 5.079 13 C -0.031 4.031 14 C 0.293 3.707 15 O -0.441 6.441 16 N -0.338 5.338 17 C -0.010 4.010 18 C -0.131 4.131 19 C -0.087 4.087 20 C -0.152 4.152 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.132 4.132 24 C -0.111 4.111 25 C 0.019 3.981 26 N -0.086 5.086 27 N -0.182 5.182 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.260 0.740 32 H 0.169 0.831 33 H 0.209 0.791 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.170 0.830 42 H 0.139 0.861 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 26.740 -23.575 -11.849 37.566 hybrid contribution -0.180 0.883 -0.115 0.909 sum 26.560 -22.692 -11.964 36.926 Atomic orbital electron populations 1.70094 1.08616 1.28232 1.52683 1.26103 0.95741 1.03787 0.93954 0.85524 0.79253 0.77148 0.79871 1.17542 1.21432 1.16842 1.21128 0.91091 0.92806 1.50483 0.96455 1.17983 0.94144 0.86609 0.98456 1.22475 0.99211 0.98718 0.94473 1.23917 1.05203 0.84753 1.05305 1.47015 1.30954 1.10278 1.19613 1.22408 0.92659 0.93108 0.94875 1.20684 0.81320 0.79912 0.88790 1.90845 1.70440 1.61349 1.21491 1.48013 1.34677 1.38686 1.12387 1.21665 0.92720 0.92544 0.94095 1.20781 1.02879 0.94964 0.94448 1.19632 1.00245 0.94049 0.94777 1.21389 1.01064 0.93808 0.98899 1.21391 0.99328 1.00950 0.92839 1.21422 0.99541 0.94497 0.99258 1.21337 0.99457 0.94997 0.97406 1.19827 1.01913 0.95650 0.93681 1.20874 1.06013 0.90057 0.81130 1.78210 1.07093 1.20751 1.02565 1.75037 1.20070 0.97584 1.25537 0.92463 0.91647 0.95223 0.74002 0.83057 0.79132 0.88271 0.90622 0.87834 0.92047 0.85408 0.84627 0.83996 0.83027 0.86116 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.40 13.96 21.45 0.30 -62.10 16 2 C 0.00 0.00 5.47 84.66 0.46 0.47 16 3 Si 0.96 44.33 27.47 68.60 1.88 46.21 16 4 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 7 C -0.52 -31.79 9.64 25.60 0.25 -31.55 16 8 H 0.02 1.22 7.98 -2.91 -0.02 1.19 16 9 C 0.07 3.32 4.62 29.10 0.13 3.45 16 10 C -0.01 -0.51 6.44 41.59 0.27 -0.24 16 11 C -0.04 -1.39 11.49 83.49 0.96 -0.43 16 12 N -0.28 -9.13 3.20 -351.46 -1.12 -10.25 16 13 C 0.09 1.57 5.36 85.63 0.46 2.02 16 14 C 0.51 11.39 7.73 87.66 0.68 12.07 16 15 O -0.56 -20.04 15.16 -3.03 -0.05 -20.09 16 16 N -0.60 -8.88 2.94 -824.81 -2.42 -11.30 16 17 C 0.11 1.65 6.44 86.17 0.55 2.21 16 18 C -0.09 -1.26 5.86 29.74 0.17 -1.08 16 19 C -0.09 -1.14 5.76 -19.85 -0.11 -1.25 16 20 C -0.13 -1.63 9.59 22.37 0.21 -1.41 16 21 C -0.13 -1.31 10.05 22.20 0.22 -1.09 16 22 C -0.13 -1.13 10.05 22.21 0.22 -0.91 16 23 C -0.11 -0.89 9.62 22.35 0.21 -0.67 16 24 C -0.11 -1.12 5.81 -19.96 -0.12 -1.24 16 25 C 0.14 0.91 6.05 85.49 0.52 1.43 16 26 N -0.11 -4.83 12.13 37.02 0.45 -4.38 16 27 N -0.32 -16.56 12.40 -48.60 -0.60 -17.17 16 28 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 29 H 0.07 2.75 7.56 -2.38 -0.02 2.73 16 30 H 0.03 1.49 7.19 -2.39 -0.02 1.48 16 31 H 0.24 4.67 8.06 -2.91 -0.02 4.64 16 32 H 0.15 1.76 7.57 -2.39 -0.02 1.75 16 33 H 0.19 0.87 8.05 -2.39 -0.02 0.85 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.53 7.07 -2.39 -0.02 1.51 16 36 H 0.10 1.00 8.11 -2.39 -0.02 0.99 16 37 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.13 1.25 8.05 -2.91 -0.02 1.23 16 39 H 0.14 0.92 8.06 -2.92 -0.02 0.89 16 40 H 0.14 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.15 0.31 8.05 -2.91 -0.02 0.29 16 42 H 0.12 0.17 6.20 -2.39 -0.01 0.16 16 43 H 0.12 0.19 8.14 -2.38 -0.02 0.17 16 Total: -1.00 -98.18 360.74 4.51 -93.67 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 0.97 Total: 3.63 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 5.10 Total: -18.22 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -3.40 Total: -105.20 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -98.18 4.51 -93.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603165607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.504 kcal (2) G-P(sol) polarization free energy of solvation -98.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds