Wall clock time and date at job start Tue Mar 31 2020 14:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99935 * 2 1 4 4 H 1.48506 * 109.47004 * 269.99131 * 3 2 1 5 5 H 1.48494 * 109.47679 * 29.99707 * 3 2 1 6 6 H 1.48503 * 109.47056 * 149.99857 * 3 2 1 7 7 C 1.37871 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00288 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99897 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.47399 * 179.97438 * 9 7 2 11 11 C 1.35352 * 126.75166 * 125.24350 * 10 9 7 12 12 N 1.35313 * 106.17247 * 180.12801 * 11 10 9 13 13 C 1.46498 * 125.86502 * 179.90499 * 12 11 10 14 14 C 1.50703 * 109.47280 * 124.71428 * 13 12 11 15 15 O 1.21288 * 119.99544 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00113 * 179.97438 * 14 13 12 17 17 C 1.39934 * 119.99850 * 185.27359 * 16 14 13 18 18 C 1.38886 * 120.10515 * 213.28533 * 17 16 14 19 19 C 1.37973 * 119.86035 * 180.02562 * 18 17 16 20 20 C 1.38569 * 120.30866 * 0.02562 * 19 18 17 21 21 C 1.38283 * 119.96200 * 359.68063 * 20 19 18 22 22 C 1.38381 * 119.91623 * 0.59580 * 21 20 19 23 23 C 1.51377 * 109.75226 * 179.83211 * 21 20 19 24 24 C 1.54341 * 105.24294 * 343.21153 * 23 21 20 25 25 C 1.51394 * 130.30205 * 180.02562 * 20 19 18 26 26 N 1.28717 * 108.26721 * 359.64178 * 12 11 10 27 27 N 1.28639 * 110.17691 * 0.22842 * 26 12 11 28 28 H 0.97003 * 119.99871 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47024 * 59.99783 * 9 7 2 30 30 H 1.09000 * 109.46866 * 299.99793 * 9 7 2 31 31 H 1.07992 * 126.91302 * 0.02562 * 11 10 9 32 32 H 1.08999 * 109.47201 * 4.71645 * 13 12 11 33 33 H 1.09003 * 109.47017 * 244.71321 * 13 12 11 34 34 H 0.96993 * 119.99953 * 5.28281 * 16 14 13 35 35 H 1.07993 * 120.07410 * 0.05014 * 18 17 16 36 36 H 1.07999 * 119.84689 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.91477 * 179.69407 * 22 21 20 38 38 H 1.09003 * 110.46610 * 224.16688 * 23 21 20 39 39 H 1.08993 * 110.16137 * 102.10273 * 23 21 20 40 40 H 1.08993 * 110.82537 * 267.91692 * 24 23 21 41 41 H 1.09003 * 110.99032 * 144.44503 * 24 23 21 42 42 H 1.08995 * 110.30545 * 316.09430 * 25 20 19 43 43 H 1.08993 * 110.30702 * 78.25110 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6149 0.0023 11 6 4.8741 -3.1705 -0.8827 12 7 5.0352 -4.4569 -0.4950 13 6 5.8806 -5.4534 -1.1572 14 6 6.8519 -6.0306 -0.1599 15 8 6.8389 -5.6475 0.9908 16 7 7.7343 -6.9731 -0.5464 17 6 8.5607 -7.5883 0.4006 18 6 9.8453 -7.9843 0.0517 19 6 10.6556 -8.5909 0.9893 20 6 10.1935 -8.8074 2.2776 21 6 8.9171 -8.4087 2.6296 22 6 8.0990 -7.8051 1.6908 23 6 8.6531 -8.7586 4.0785 24 6 9.7383 -9.7911 4.4508 25 6 10.8777 -9.4425 3.4695 26 7 4.3224 -4.6530 0.5587 27 7 3.7009 -3.5738 0.8811 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8751 -0.6805 -0.8889 31 1 5.3373 -2.6853 -1.7290 32 1 6.4322 -4.9800 -1.9694 33 1 5.2555 -6.2509 -1.5589 34 1 7.7966 -7.2249 -1.4810 35 1 10.2094 -7.8176 -0.9512 36 1 11.6547 -8.8985 0.7179 37 1 7.1004 -7.4982 1.9644 38 1 7.6609 -9.1959 4.1904 39 1 8.7466 -7.8700 4.7027 40 1 9.3802 -10.8069 4.2840 41 1 10.0630 -9.6611 5.4832 42 1 11.4047 -10.3469 3.1656 43 1 11.5697 -8.7368 3.9288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603187306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:32 Heat of formation + Delta-G solvation = 96.452743 kcal Electronic energy + Delta-G solvation = -25858.772248 eV Core-core repulsion = 22099.298689 eV Total energy + Delta-G solvation = -3759.473559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.64915 -41.00145 -39.63300 -36.60916 -34.56443 -34.16178 -33.08011 -31.51549 -31.26375 -29.53013 -28.43531 -27.79653 -27.00386 -23.65158 -23.12708 -22.20707 -21.17986 -21.12327 -20.80875 -20.02762 -17.97774 -17.56963 -16.67497 -16.60444 -16.21030 -15.93827 -15.86592 -15.39755 -15.01492 -14.46088 -14.17986 -14.02137 -13.78519 -13.59083 -13.40667 -13.18189 -13.00815 -12.74016 -12.25984 -12.15703 -12.04917 -11.88364 -11.61493 -11.49685 -11.18518 -11.09606 -10.62465 -10.58528 -10.50856 -10.27388 -10.07370 -9.83080 -9.40830 -9.29846 -8.99711 -8.51585 -8.29967 -8.24581 -5.97566 -3.95412 0.90948 1.11204 1.95643 2.14891 2.37636 2.85957 3.33085 3.41751 3.42908 3.44561 3.45888 3.96593 4.17071 4.26405 4.34388 4.48619 4.63556 4.66577 4.70323 4.74022 4.91608 4.99939 5.04635 5.22081 5.34392 5.36487 5.39987 5.48574 5.53507 5.61703 5.68564 5.76429 5.83482 5.93424 5.96202 6.01822 6.14321 6.16447 6.39648 6.71964 6.83456 6.86978 7.05432 7.11352 7.23634 7.67214 7.75375 8.60040 9.10437 9.25289 9.61549 11.15917 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024890 B = 0.002129 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.680884 B =13151.263017 C =13627.635663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.059 3.941 10 C 0.043 3.957 11 C -0.082 4.082 12 N -0.301 5.301 13 C 0.108 3.892 14 C 0.499 3.501 15 O -0.478 6.478 16 N -0.673 5.673 17 C 0.149 3.851 18 C -0.145 4.145 19 C -0.089 4.089 20 C -0.115 4.115 21 C -0.075 4.075 22 C -0.108 4.108 23 C -0.085 4.085 24 C -0.120 4.120 25 C -0.080 4.080 26 N -0.078 5.078 27 N -0.251 5.251 28 H 0.263 0.737 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.184 0.816 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.412 0.588 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.864 -21.431 -2.732 33.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.544 4.544 8 H 0.095 0.905 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.229 4.229 12 N -0.096 5.096 13 C -0.019 4.019 14 C 0.283 3.717 15 O -0.348 6.348 16 N -0.320 5.320 17 C 0.055 3.945 18 C -0.166 4.166 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.075 4.075 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.158 4.158 25 C -0.117 4.117 26 N -0.057 5.057 27 N -0.119 5.119 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.201 0.799 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.248 0.752 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 25.183 -21.998 -0.841 33.448 hybrid contribution 0.809 1.511 -1.665 2.390 sum 25.991 -20.487 -2.506 33.190 Atomic orbital electron populations 1.69907 1.06217 1.26781 1.51069 1.24978 0.94778 0.98876 0.94774 0.86828 0.80522 0.83849 0.78431 1.20252 1.21238 1.18882 1.20916 0.88129 0.94862 1.50491 0.90542 1.18163 0.97782 0.84502 0.97563 1.22483 0.95739 0.99053 0.92078 1.23275 1.08387 0.85045 1.06221 1.46560 1.32597 1.09162 1.21301 1.21562 0.92675 0.93354 0.94305 1.20687 0.81447 0.79530 0.90037 1.90881 1.67595 1.57481 1.18847 1.43343 1.38021 1.39530 1.11102 1.17463 0.90110 0.96888 0.90033 1.20721 0.91949 1.03418 1.00472 1.20357 0.99398 0.99195 0.91840 1.20618 0.95617 1.00705 0.94644 1.20443 0.94226 0.97248 0.95630 1.20640 1.01044 0.99288 0.91786 1.21076 0.99914 0.99410 0.91791 1.22296 0.95089 0.99134 0.99241 1.21024 0.97750 1.00060 0.92836 1.78339 1.05674 1.21580 1.00082 1.75138 1.17563 0.96072 1.23127 0.92709 0.94362 0.95082 0.79893 0.84912 0.85476 0.75168 0.85471 0.85852 0.84666 0.90426 0.89904 0.90934 0.90465 0.90814 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.51 -14.93 9.64 -34.44 -0.33 -15.27 16 8 H 0.08 2.52 7.98 -52.49 -0.42 2.10 16 9 C 0.06 1.46 4.62 -29.03 -0.13 1.33 16 10 C 0.04 0.98 6.44 -82.77 -0.53 0.45 16 11 C -0.08 -1.44 11.49 -17.05 -0.20 -1.63 16 12 N -0.30 -4.96 3.20 -62.44 -0.20 -5.16 16 13 C 0.11 1.01 6.94 -5.19 -0.04 0.97 16 14 C 0.50 5.66 7.58 -10.99 -0.08 5.57 16 15 O -0.48 -8.07 13.36 5.55 0.07 -8.00 16 16 N -0.67 -5.29 5.34 -9.89 -0.05 -5.34 16 17 C 0.15 1.48 6.28 -83.74 -0.53 0.96 16 18 C -0.15 -1.16 9.96 -39.44 -0.39 -1.55 16 19 C -0.09 -0.72 10.03 -39.56 -0.40 -1.11 16 20 C -0.12 -1.04 6.14 -104.14 -0.64 -1.68 16 21 C -0.07 -0.80 6.14 -104.22 -0.64 -1.44 16 22 C -0.11 -1.30 8.66 -39.35 -0.34 -1.64 16 23 C -0.08 -0.74 6.77 -26.85 -0.18 -0.92 16 24 C -0.12 -0.78 7.08 -25.32 -0.18 -0.95 16 25 C -0.08 -0.54 6.77 -26.83 -0.18 -0.72 16 26 N -0.08 -1.66 12.13 60.35 0.73 -0.93 16 27 N -0.25 -6.22 12.40 33.29 0.41 -5.80 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 30 H 0.03 0.70 7.55 -51.93 -0.39 0.31 16 31 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 32 H 0.13 0.62 8.07 -51.93 -0.42 0.20 16 33 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.41 1.41 8.82 -40.82 -0.36 1.05 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.14 1.93 6.41 -52.48 -0.34 1.59 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -40.19 364.11 -8.03 -48.22 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.69 Total: -2.08 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -4.89 Total: -15.76 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 1.67 Total: -44.76 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.07 Total: -8.00 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -40.19 -8.03 -48.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603187306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.668 kcal (2) G-P(sol) polarization free energy of solvation -40.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds