Wall clock time and date at job start Tue Mar 31 2020 14:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99935 * 2 1 4 4 H 1.48506 * 109.47004 * 269.99131 * 3 2 1 5 5 H 1.48494 * 109.47679 * 29.99707 * 3 2 1 6 6 H 1.48503 * 109.47056 * 149.99857 * 3 2 1 7 7 C 1.37871 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00288 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99897 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.47399 * 179.97438 * 9 7 2 11 11 C 1.35352 * 126.75166 * 125.24350 * 10 9 7 12 12 N 1.35313 * 106.17247 * 180.12801 * 11 10 9 13 13 C 1.46498 * 125.86502 * 179.90499 * 12 11 10 14 14 C 1.50703 * 109.47280 * 124.71428 * 13 12 11 15 15 O 1.21288 * 119.99544 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00113 * 179.97438 * 14 13 12 17 17 C 1.39934 * 119.99850 * 185.27359 * 16 14 13 18 18 C 1.38886 * 120.10515 * 213.28533 * 17 16 14 19 19 C 1.37973 * 119.86035 * 180.02562 * 18 17 16 20 20 C 1.38569 * 120.30866 * 0.02562 * 19 18 17 21 21 C 1.38283 * 119.96200 * 359.68063 * 20 19 18 22 22 C 1.38381 * 119.91623 * 0.59580 * 21 20 19 23 23 C 1.51377 * 109.75226 * 179.83211 * 21 20 19 24 24 C 1.54341 * 105.24294 * 343.21153 * 23 21 20 25 25 C 1.51394 * 130.30205 * 180.02562 * 20 19 18 26 26 N 1.28717 * 108.26721 * 359.64178 * 12 11 10 27 27 N 1.28639 * 110.17691 * 0.22842 * 26 12 11 28 28 H 0.97003 * 119.99871 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47024 * 59.99783 * 9 7 2 30 30 H 1.09000 * 109.46866 * 299.99793 * 9 7 2 31 31 H 1.07992 * 126.91302 * 0.02562 * 11 10 9 32 32 H 1.08999 * 109.47201 * 4.71645 * 13 12 11 33 33 H 1.09003 * 109.47017 * 244.71321 * 13 12 11 34 34 H 0.96993 * 119.99953 * 5.28281 * 16 14 13 35 35 H 1.07993 * 120.07410 * 0.05014 * 18 17 16 36 36 H 1.07999 * 119.84689 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.91477 * 179.69407 * 22 21 20 38 38 H 1.09003 * 110.46610 * 224.16688 * 23 21 20 39 39 H 1.08993 * 110.16137 * 102.10273 * 23 21 20 40 40 H 1.08993 * 110.82537 * 267.91692 * 24 23 21 41 41 H 1.09003 * 110.99032 * 144.44503 * 24 23 21 42 42 H 1.08995 * 110.30545 * 316.09430 * 25 20 19 43 43 H 1.08993 * 110.30702 * 78.25110 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6149 0.0023 11 6 4.8741 -3.1705 -0.8827 12 7 5.0352 -4.4569 -0.4950 13 6 5.8806 -5.4534 -1.1572 14 6 6.8519 -6.0306 -0.1599 15 8 6.8389 -5.6475 0.9908 16 7 7.7343 -6.9731 -0.5464 17 6 8.5607 -7.5883 0.4006 18 6 9.8453 -7.9843 0.0517 19 6 10.6556 -8.5909 0.9893 20 6 10.1935 -8.8074 2.2776 21 6 8.9171 -8.4087 2.6296 22 6 8.0990 -7.8051 1.6908 23 6 8.6531 -8.7586 4.0785 24 6 9.7383 -9.7911 4.4508 25 6 10.8777 -9.4425 3.4695 26 7 4.3224 -4.6530 0.5587 27 7 3.7009 -3.5738 0.8811 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8751 -0.6805 -0.8889 31 1 5.3373 -2.6853 -1.7290 32 1 6.4322 -4.9800 -1.9694 33 1 5.2555 -6.2509 -1.5589 34 1 7.7966 -7.2249 -1.4810 35 1 10.2094 -7.8176 -0.9512 36 1 11.6547 -8.8985 0.7179 37 1 7.1004 -7.4982 1.9644 38 1 7.6609 -9.1959 4.1904 39 1 8.7466 -7.8700 4.7027 40 1 9.3802 -10.8069 4.2840 41 1 10.0630 -9.6611 5.4832 42 1 11.4047 -10.3469 3.1656 43 1 11.5697 -8.7368 3.9288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603187306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:31 Heat of formation + Delta-G solvation = 66.867534 kcal Electronic energy + Delta-G solvation = -25860.055159 eV Core-core repulsion = 22099.298689 eV Total energy + Delta-G solvation = -3760.756470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.10748 -41.78140 -40.41086 -37.36642 -36.02236 -35.07313 -34.80229 -33.14573 -32.21589 -30.53572 -29.76962 -28.93870 -27.76422 -25.13784 -24.43757 -23.24605 -22.39479 -21.76621 -21.74161 -21.27528 -18.93261 -18.87095 -18.46966 -17.62705 -17.06669 -16.96021 -16.54618 -16.25859 -16.08045 -15.96528 -15.61763 -15.12793 -15.06024 -14.56148 -14.30600 -14.23196 -13.95186 -13.78906 -13.75735 -13.50796 -12.93128 -12.87254 -12.47704 -12.44701 -12.34382 -12.25787 -12.07089 -11.94067 -11.83901 -11.63352 -11.50969 -11.37074 -11.05760 -10.77020 -10.71472 -9.87049 -9.73270 -8.99364 -8.23884 -6.29026 0.18562 0.39518 0.68457 1.31982 1.35262 1.40379 1.45820 1.57248 1.76749 1.97580 2.41391 2.75200 3.09971 3.24125 3.51307 3.62685 3.66285 3.81831 4.00910 4.06246 4.12699 4.15710 4.22892 4.29484 4.39637 4.41309 4.56993 4.68955 4.73113 4.79659 4.91825 4.93918 5.00752 5.04240 5.14195 5.27120 5.31149 5.31923 5.33477 5.36312 5.46725 5.61780 5.69355 5.73752 6.03451 6.27680 6.33099 6.76001 6.96187 7.32441 7.70327 8.93936 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024890 B = 0.002129 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.680884 B =13151.263017 C =13627.635663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.960 3.040 4 H -0.251 1.251 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.517 4.517 8 H 0.017 0.983 9 C 0.067 3.933 10 C -0.012 4.012 11 C -0.041 4.041 12 N -0.285 5.285 13 C 0.097 3.903 14 C 0.497 3.503 15 O -0.545 6.545 16 N -0.648 5.648 17 C 0.133 3.867 18 C -0.135 4.135 19 C -0.091 4.091 20 C -0.121 4.121 21 C -0.102 4.102 22 C -0.139 4.139 23 C -0.092 4.092 24 C -0.114 4.114 25 C -0.078 4.078 26 N -0.107 5.107 27 N -0.315 5.315 28 H 0.267 0.733 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.244 0.756 32 H 0.197 0.803 33 H 0.162 0.838 34 H 0.436 0.564 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.525 -21.585 -5.948 37.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.175 1.175 5 H -0.214 1.214 6 H -0.169 1.169 7 C -0.555 4.555 8 H 0.036 0.964 9 C 0.028 3.972 10 C -0.149 4.149 11 C -0.191 4.191 12 N -0.080 5.080 13 C -0.026 4.026 14 C 0.284 3.716 15 O -0.420 6.420 16 N -0.297 5.297 17 C 0.039 3.961 18 C -0.155 4.155 19 C -0.109 4.109 20 C -0.121 4.121 21 C -0.102 4.102 22 C -0.159 4.159 23 C -0.129 4.129 24 C -0.151 4.151 25 C -0.114 4.114 26 N -0.085 5.085 27 N -0.182 5.182 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.260 0.740 32 H 0.214 0.786 33 H 0.180 0.820 34 H 0.277 0.723 35 H 0.182 0.818 36 H 0.173 0.827 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 29.884 -22.249 -4.105 37.482 hybrid contribution -0.601 1.346 -0.715 1.639 sum 29.283 -20.902 -4.820 36.299 Atomic orbital electron populations 1.70096 1.08593 1.28238 1.52646 1.26098 0.95749 1.03777 0.93958 0.85524 0.79227 0.77183 0.79867 1.17544 1.21385 1.16924 1.21119 0.91069 0.92824 1.50514 0.96414 1.17982 0.94174 0.86655 0.98418 1.22480 0.99191 0.98659 0.94619 1.23917 1.05196 0.84663 1.05286 1.47010 1.31199 1.10210 1.19586 1.22341 0.92437 0.93577 0.94233 1.21067 0.81679 0.79490 0.89402 1.90887 1.69531 1.59933 1.21600 1.43097 1.36569 1.37967 1.12041 1.17643 0.91394 0.97481 0.89622 1.21110 0.90562 1.01750 1.02084 1.20817 1.00704 0.98186 0.91229 1.21015 0.94902 1.00221 0.95999 1.20704 0.95318 0.98000 0.96195 1.20600 1.00103 1.01372 0.93839 1.21158 1.00641 0.99840 0.91255 1.22309 0.94146 0.98510 1.00169 1.21088 0.97639 1.00889 0.91827 1.78205 1.07119 1.20825 1.02401 1.75039 1.19911 0.97625 1.25629 0.92450 0.95295 0.91680 0.73991 0.78601 0.82021 0.72277 0.81836 0.82722 0.88396 0.91266 0.90917 0.90265 0.89003 0.88768 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.38 13.96 21.45 0.30 -62.08 16 2 C 0.00 0.01 5.47 84.65 0.46 0.47 16 3 Si 0.96 44.43 27.47 68.60 1.88 46.31 16 4 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 7 C -0.52 -31.81 9.64 25.60 0.25 -31.56 16 8 H 0.02 1.25 7.98 -2.91 -0.02 1.22 16 9 C 0.07 3.30 4.62 29.10 0.13 3.44 16 10 C -0.01 -0.54 6.44 41.60 0.27 -0.27 16 11 C -0.04 -1.33 11.49 83.49 0.96 -0.37 16 12 N -0.28 -8.88 3.20 -351.47 -1.12 -10.00 16 13 C 0.10 1.44 6.94 85.63 0.59 2.04 16 14 C 0.50 10.59 7.58 87.66 0.66 11.25 16 15 O -0.54 -19.10 13.36 -3.06 -0.04 -19.15 16 16 N -0.65 -8.69 5.34 -303.59 -1.62 -10.31 16 17 C 0.13 2.51 6.28 38.12 0.24 2.74 16 18 C -0.14 -1.73 9.96 22.36 0.22 -1.51 16 19 C -0.09 -1.19 10.03 22.29 0.22 -0.97 16 20 C -0.12 -2.03 6.14 -19.55 -0.12 -2.15 16 21 C -0.10 -2.27 6.14 -19.60 -0.12 -2.39 16 22 C -0.14 -3.59 8.66 22.42 0.19 -3.40 16 23 C -0.09 -1.75 6.77 30.52 0.21 -1.54 16 24 C -0.11 -1.39 7.08 31.51 0.22 -1.17 16 25 C -0.08 -0.89 6.77 30.53 0.21 -0.69 16 26 N -0.11 -4.71 12.13 37.02 0.45 -4.26 16 27 N -0.32 -16.43 12.40 -48.60 -0.60 -17.04 16 28 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 29 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 30 H 0.07 2.74 7.55 -2.39 -0.02 2.72 16 31 H 0.24 4.58 8.06 -2.91 -0.02 4.56 16 32 H 0.20 0.44 8.07 -2.39 -0.02 0.42 16 33 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.44 1.17 8.82 -92.71 -0.82 0.35 16 35 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 37 H 0.10 3.21 6.41 -2.91 -0.02 3.19 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -100.56 364.11 4.02 -96.54 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 0.17 Total: 6.07 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 4.61 Total: -26.09 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -2.60 Total: -103.69 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.04 Total: -19.15 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Total: -100.56 4.02 -96.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603187306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.406 kcal (2) G-P(sol) polarization free energy of solvation -100.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds