Wall clock time and date at job start Tue Mar 31 2020 15:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48498 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46875 * 299.99187 * 3 2 1 6 6 H 1.48500 * 109.47050 * 59.99247 * 3 2 1 7 7 C 1.40041 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.46378 * 120.00351 * 0.02562 * 7 2 1 10 10 O 1.21694 * 119.99727 * 359.97438 * 9 7 2 11 11 N 1.34770 * 120.00383 * 179.97438 * 9 7 2 12 12 C 1.46505 * 120.00104 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47150 * 179.97438 * 12 11 9 14 14 C 1.35355 * 126.74830 * 95.00110 * 13 12 11 15 15 N 1.35316 * 106.17493 * 180.02562 * 14 13 12 16 16 C 1.46497 * 125.86649 * 180.02562 * 15 14 13 17 17 H 1.09007 * 109.24865 * 204.47440 * 16 15 14 18 18 C 1.52738 * 109.25513 * 85.00272 * 16 15 14 19 19 C 1.53322 * 108.37981 * 188.65977 * 18 16 15 20 20 C 1.52727 * 108.38592 * 69.88519 * 19 18 16 21 21 C 1.50634 * 110.58726 * 308.90605 * 20 19 18 22 22 C 1.38916 * 117.74798 * 197.48912 * 21 20 19 23 23 C 1.37932 * 120.54354 * 180.26114 * 22 21 20 24 24 C 1.38264 * 119.77049 * 0.39219 * 23 22 21 25 25 C 1.37933 * 119.77097 * 359.34021 * 24 23 22 26 26 C 1.37665 * 122.56668 * 17.70590 * 21 20 19 27 27 N 1.28719 * 108.26455 * 0.26689 * 15 14 13 28 28 N 1.28636 * 110.17414 * 359.55530 * 27 15 14 29 29 H 0.96998 * 119.99935 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00098 * 359.97438 * 11 9 7 31 31 H 1.09004 * 109.46478 * 60.00064 * 12 11 9 32 32 H 1.08994 * 109.47231 * 300.00347 * 12 11 9 33 33 H 1.07998 * 126.91156 * 0.02562 * 14 13 12 34 34 H 1.09003 * 109.67836 * 68.93437 * 18 16 15 35 35 H 1.08998 * 109.70897 * 308.40202 * 18 16 15 36 36 H 1.09003 * 109.68448 * 310.15905 * 19 18 16 37 37 H 1.09009 * 109.70934 * 189.62797 * 19 18 16 38 38 H 1.09002 * 109.25635 * 188.62130 * 20 19 18 39 39 H 1.08999 * 109.22234 * 69.17384 * 20 19 18 40 40 H 1.07998 * 119.72925 * 0.27834 * 22 21 20 41 41 H 1.08002 * 120.11105 * 180.10931 * 23 22 21 42 42 H 1.07999 * 120.11519 * 179.60119 * 24 23 22 43 43 H 1.07997 * 119.73076 * 180.25923 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8821 2.3963 -1.2126 6 1 1.8819 2.3965 1.2124 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6476 0.0005 12 6 1.2164 -4.9164 0.0011 13 6 2.1957 -6.0618 0.0004 14 6 2.6510 -6.7388 1.0804 15 7 3.5058 -7.6744 0.6061 16 6 4.2458 -8.6484 1.4123 17 1 5.1382 -8.9602 0.8695 18 6 3.3607 -9.8665 1.6684 19 6 4.0654 -10.7707 2.6866 20 6 4.0496 -10.0711 4.0441 21 6 4.5700 -8.6629 3.9205 22 6 4.9711 -8.0172 5.0832 23 6 5.4517 -6.7251 5.0373 24 6 5.5277 -6.0636 3.8256 25 6 5.1352 -6.7050 2.6693 26 6 4.6542 -8.0075 2.7128 27 7 3.5609 -7.5582 -0.6746 28 7 2.7866 -6.6092 -1.0677 29 1 -0.4850 0.8400 -0.0004 30 1 2.9190 -3.6477 0.0002 31 1 0.5895 -4.9743 -0.8887 32 1 0.5901 -4.9740 0.8913 33 1 2.3854 -6.5668 2.1130 34 1 3.2081 -10.4117 0.7369 35 1 2.3987 -9.5446 2.0672 36 1 5.0955 -10.9424 2.3740 37 1 3.5399 -11.7231 2.7581 38 1 4.6768 -10.6261 4.7418 39 1 3.0277 -10.0448 4.4224 40 1 4.9063 -8.5311 6.0308 41 1 5.7633 -6.2304 5.9453 42 1 5.8971 -5.0496 3.7841 43 1 5.1988 -6.1891 1.7226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603202939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:03 Heat of formation + Delta-G solvation = 79.501048 kcal Electronic energy + Delta-G solvation = -26868.416076 eV Core-core repulsion = 23108.207436 eV Total energy + Delta-G solvation = -3760.208639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.26296 -40.44554 -37.26062 -36.79043 -34.74556 -33.56207 -32.32852 -31.40238 -30.84330 -30.53045 -28.99211 -27.01374 -25.08596 -24.66128 -23.24059 -22.91121 -21.67369 -21.04432 -19.81523 -19.61539 -17.82001 -17.20325 -16.50277 -16.24353 -15.90647 -15.60285 -15.28391 -14.76308 -14.54050 -14.46033 -14.24142 -13.92395 -13.77904 -13.57307 -13.35587 -13.08046 -12.79587 -12.58427 -12.24995 -12.04166 -11.90295 -11.62487 -11.54008 -11.32030 -11.23303 -11.08852 -10.96350 -10.91129 -10.53603 -10.42256 -10.16689 -10.00614 -9.20288 -9.09081 -9.00359 -8.81756 -7.55749 -7.45518 -6.14278 -4.59048 0.83573 1.01014 1.67736 2.31531 2.68071 3.16170 3.24316 3.29022 3.36555 3.83914 4.07204 4.15685 4.30651 4.35580 4.46801 4.59916 4.64609 4.67602 4.71592 4.78389 4.95068 5.02197 5.04172 5.15241 5.20683 5.26981 5.33923 5.36637 5.39108 5.48658 5.57704 5.68701 5.68983 5.73113 5.88086 6.09665 6.12690 6.18603 6.20500 6.48937 6.56057 6.59459 6.66441 7.48100 7.96951 8.12264 8.38092 8.67178 9.07148 9.57963 10.64358 10.82917 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.002984 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.109136 B = 9380.935734 C =10482.993360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.581 6.581 11 N -0.760 5.760 12 C 0.217 3.783 13 C -0.019 4.019 14 C -0.029 4.029 15 N -0.292 5.292 16 C 0.195 3.805 17 H 0.120 0.880 18 C -0.130 4.130 19 C -0.114 4.114 20 C -0.086 4.086 21 C -0.056 4.056 22 C -0.125 4.125 23 C -0.104 4.104 24 C -0.117 4.117 25 C -0.097 4.097 26 C -0.109 4.109 27 N -0.093 5.093 28 N -0.253 5.253 29 H 0.267 0.733 30 H 0.380 0.620 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.184 0.816 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.369 -21.616 12.125 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.463 6.463 11 N -0.417 5.417 12 C 0.090 3.910 13 C -0.157 4.157 14 C -0.180 4.180 15 N -0.085 5.085 16 C 0.094 3.906 17 H 0.138 0.862 18 C -0.168 4.168 19 C -0.152 4.152 20 C -0.123 4.123 21 C -0.057 4.057 22 C -0.143 4.143 23 C -0.122 4.122 24 C -0.135 4.135 25 C -0.115 4.115 26 C -0.111 4.111 27 N -0.071 5.071 28 N -0.121 5.121 29 H 0.078 0.922 30 H 0.212 0.788 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.201 0.799 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.895 -22.073 10.796 27.300 hybrid contribution 0.602 1.235 1.091 1.755 sum 12.497 -20.837 11.887 27.050 Atomic orbital electron populations 1.70033 1.07015 1.27087 1.35550 1.25700 0.94612 1.00236 0.92656 0.86328 0.80491 0.81822 0.78173 1.18826 1.20153 1.20214 1.20895 0.93579 0.89287 1.54234 0.91454 1.18216 0.87184 0.82235 0.76278 1.90603 1.14033 1.86731 1.54964 1.46144 1.08604 1.04127 1.82789 1.19037 0.90263 0.79701 1.01970 1.22318 1.03243 1.01473 0.88679 1.23303 0.98210 0.94635 1.01883 1.47458 1.30246 1.24311 1.06506 1.20276 0.95337 0.86446 0.88556 0.86246 1.21991 0.99106 0.94623 1.01114 1.21520 1.01492 0.98357 0.93843 1.20570 1.01915 0.91646 0.98137 1.19517 0.98175 0.96143 0.91822 1.21149 1.00116 0.95358 0.97643 1.21213 0.98184 0.94665 0.98100 1.21157 0.99745 1.00303 0.92296 1.21212 0.97144 0.93909 0.99239 1.19347 1.03478 0.95299 0.92940 1.78292 1.19539 1.16871 0.92399 1.75113 1.06615 1.04269 1.26059 0.92200 0.78845 0.91455 0.91610 0.79855 0.89887 0.90280 0.90914 0.90163 0.90099 0.89991 0.85705 0.85594 0.85334 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.31 11.83 55.55 0.66 -22.65 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.43 29.56 -169.99 -5.02 15.41 16 4 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.63 9.54 -35.63 -0.34 -15.97 16 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 9 C 0.56 16.18 7.75 -12.99 -0.10 16.08 16 10 O -0.58 -19.05 15.02 5.19 0.08 -18.97 16 11 N -0.76 -17.83 5.54 -62.90 -0.35 -18.18 16 12 C 0.22 4.45 6.23 -5.19 -0.03 4.41 16 13 C -0.02 -0.34 6.62 -82.78 -0.55 -0.88 16 14 C -0.03 -0.41 9.43 -17.04 -0.16 -0.57 16 15 N -0.29 -3.77 2.69 -56.05 -0.15 -3.92 16 16 C 0.20 1.81 3.11 -69.25 -0.22 1.59 16 17 H 0.12 1.02 8.14 -51.92 -0.42 0.60 16 18 C -0.13 -0.94 5.57 -26.70 -0.15 -1.09 16 19 C -0.11 -0.57 5.98 -26.70 -0.16 -0.72 16 20 C -0.09 -0.45 5.67 -28.06 -0.16 -0.61 16 21 C -0.06 -0.43 5.74 -104.61 -0.60 -1.03 16 22 C -0.12 -0.92 9.61 -39.44 -0.38 -1.30 16 23 C -0.10 -0.84 10.05 -39.68 -0.40 -1.24 16 24 C -0.12 -1.12 10.05 -39.68 -0.40 -1.51 16 25 C -0.10 -1.01 8.20 -39.44 -0.32 -1.34 16 26 C -0.11 -1.01 4.91 -104.62 -0.51 -1.52 16 27 N -0.09 -1.49 13.17 60.35 0.79 -0.69 16 28 N -0.25 -4.70 12.41 33.29 0.41 -4.29 16 29 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 30 H 0.38 8.20 8.44 -40.82 -0.34 7.85 16 31 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.18 2.27 7.86 -52.49 -0.41 1.85 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.07 0.34 8.10 -51.93 -0.42 -0.09 16 37 H 0.08 0.30 8.14 -51.92 -0.42 -0.13 16 38 H 0.08 0.32 8.13 -51.93 -0.42 -0.10 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.12 0.65 8.05 -52.49 -0.42 0.23 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.12 1.45 7.34 -52.49 -0.39 1.06 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -36.40 362.62 -8.45 -44.84 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.76 Total: 6.31 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -4.57 Total: -3.33 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 1.36 Total: -49.73 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.08 Total: -18.97 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.40 -8.45 -44.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603202939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.345 kcal (2) G-P(sol) polarization free energy of solvation -36.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds