Wall clock time and date at job start Tue Mar 31 2020 15:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48498 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46875 * 299.99187 * 3 2 1 6 6 H 1.48500 * 109.47050 * 59.99247 * 3 2 1 7 7 C 1.40041 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.46378 * 120.00351 * 0.02562 * 7 2 1 10 10 O 1.21694 * 119.99727 * 359.97438 * 9 7 2 11 11 N 1.34770 * 120.00383 * 179.97438 * 9 7 2 12 12 C 1.46505 * 120.00104 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47150 * 179.97438 * 12 11 9 14 14 C 1.35355 * 126.74830 * 95.00110 * 13 12 11 15 15 N 1.35316 * 106.17493 * 180.02562 * 14 13 12 16 16 C 1.46497 * 125.86649 * 180.02562 * 15 14 13 17 17 H 1.09007 * 109.24865 * 204.47440 * 16 15 14 18 18 C 1.52738 * 109.25513 * 85.00272 * 16 15 14 19 19 C 1.53322 * 108.37981 * 188.65977 * 18 16 15 20 20 C 1.52727 * 108.38592 * 69.88519 * 19 18 16 21 21 C 1.50634 * 110.58726 * 308.90605 * 20 19 18 22 22 C 1.38916 * 117.74798 * 197.48912 * 21 20 19 23 23 C 1.37932 * 120.54354 * 180.26114 * 22 21 20 24 24 C 1.38264 * 119.77049 * 0.39219 * 23 22 21 25 25 C 1.37933 * 119.77097 * 359.34021 * 24 23 22 26 26 C 1.37665 * 122.56668 * 17.70590 * 21 20 19 27 27 N 1.28719 * 108.26455 * 0.26689 * 15 14 13 28 28 N 1.28636 * 110.17414 * 359.55530 * 27 15 14 29 29 H 0.96998 * 119.99935 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00098 * 359.97438 * 11 9 7 31 31 H 1.09004 * 109.46478 * 60.00064 * 12 11 9 32 32 H 1.08994 * 109.47231 * 300.00347 * 12 11 9 33 33 H 1.07998 * 126.91156 * 0.02562 * 14 13 12 34 34 H 1.09003 * 109.67836 * 68.93437 * 18 16 15 35 35 H 1.08998 * 109.70897 * 308.40202 * 18 16 15 36 36 H 1.09003 * 109.68448 * 310.15905 * 19 18 16 37 37 H 1.09009 * 109.70934 * 189.62797 * 19 18 16 38 38 H 1.09002 * 109.25635 * 188.62130 * 20 19 18 39 39 H 1.08999 * 109.22234 * 69.17384 * 20 19 18 40 40 H 1.07998 * 119.72925 * 0.27834 * 22 21 20 41 41 H 1.08002 * 120.11105 * 180.10931 * 23 22 21 42 42 H 1.07999 * 120.11519 * 179.60119 * 24 23 22 43 43 H 1.07997 * 119.73076 * 180.25923 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8821 2.3963 -1.2126 6 1 1.8819 2.3965 1.2124 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6476 0.0005 12 6 1.2164 -4.9164 0.0011 13 6 2.1957 -6.0618 0.0004 14 6 2.6510 -6.7388 1.0804 15 7 3.5058 -7.6744 0.6061 16 6 4.2458 -8.6484 1.4123 17 1 5.1382 -8.9602 0.8695 18 6 3.3607 -9.8665 1.6684 19 6 4.0654 -10.7707 2.6866 20 6 4.0496 -10.0711 4.0441 21 6 4.5700 -8.6629 3.9205 22 6 4.9711 -8.0172 5.0832 23 6 5.4517 -6.7251 5.0373 24 6 5.5277 -6.0636 3.8256 25 6 5.1352 -6.7050 2.6693 26 6 4.6542 -8.0075 2.7128 27 7 3.5609 -7.5582 -0.6746 28 7 2.7866 -6.6092 -1.0677 29 1 -0.4850 0.8400 -0.0004 30 1 2.9190 -3.6477 0.0002 31 1 0.5895 -4.9743 -0.8887 32 1 0.5901 -4.9740 0.8913 33 1 2.3854 -6.5668 2.1130 34 1 3.2081 -10.4117 0.7369 35 1 2.3987 -9.5446 2.0672 36 1 5.0955 -10.9424 2.3740 37 1 3.5399 -11.7231 2.7581 38 1 4.6768 -10.6261 4.7418 39 1 3.0277 -10.0448 4.4224 40 1 4.9063 -8.5311 6.0308 41 1 5.7633 -6.2304 5.9453 42 1 5.8971 -5.0496 3.7841 43 1 5.1988 -6.1891 1.7226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603202939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:02 Heat of formation + Delta-G solvation = 54.988337 kcal Electronic energy + Delta-G solvation = -26869.479026 eV Core-core repulsion = 23108.207436 eV Total energy + Delta-G solvation = -3761.271590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.48709 -41.11670 -39.37818 -37.52427 -35.90135 -35.12782 -34.47349 -32.48637 -32.08825 -31.29693 -29.73106 -28.95020 -26.87353 -25.48477 -23.81913 -23.67948 -22.82802 -22.29889 -21.66003 -20.41962 -19.44952 -18.54014 -17.63222 -17.35520 -17.13745 -16.53340 -16.38622 -16.13591 -15.99344 -15.89263 -15.24103 -15.08770 -14.89822 -14.50196 -14.36017 -14.20644 -13.97584 -13.67677 -13.51644 -13.19435 -13.09346 -12.81947 -12.78998 -12.68681 -12.60052 -12.47831 -12.09526 -11.99672 -11.97676 -11.75010 -11.49783 -11.06772 -10.93951 -10.49571 -9.83965 -9.81960 -9.63058 -9.52548 -8.28917 -6.85573 0.15529 0.34967 0.49958 1.26091 1.34643 1.40643 1.41401 1.59042 2.26356 2.47028 2.70248 3.02321 3.22883 3.33428 3.48516 3.60979 3.72371 3.77089 3.84129 3.88457 4.05205 4.08299 4.14365 4.21439 4.36500 4.43233 4.49550 4.60035 4.64538 4.74995 4.84672 4.87683 4.91571 4.96593 5.00865 5.09989 5.17387 5.30329 5.32376 5.41806 5.52021 5.54761 5.61929 5.85970 5.97931 6.13630 6.24912 6.86820 7.38396 7.49374 8.47272 8.66967 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.002984 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.109136 B = 9380.935734 C =10482.993360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.029 3.971 3 Si 0.999 3.001 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.571 4.571 8 H 0.084 0.916 9 C 0.542 3.458 10 O -0.629 6.629 11 N -0.748 5.748 12 C 0.225 3.775 13 C -0.039 4.039 14 C -0.004 4.004 15 N -0.273 5.273 16 C 0.188 3.812 17 H 0.127 0.873 18 C -0.126 4.126 19 C -0.108 4.108 20 C -0.085 4.085 21 C -0.053 4.053 22 C -0.123 4.123 23 C -0.106 4.106 24 C -0.134 4.134 25 C -0.117 4.117 26 C -0.118 4.118 27 N -0.100 5.100 28 N -0.289 5.289 29 H 0.275 0.725 30 H 0.390 0.610 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.205 0.795 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.127 0.873 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.268 -22.865 14.425 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.608 4.608 8 H 0.102 0.898 9 C 0.346 3.654 10 O -0.516 6.516 11 N -0.403 5.403 12 C 0.099 3.901 13 C -0.177 4.177 14 C -0.156 4.156 15 N -0.066 5.066 16 C 0.089 3.911 17 H 0.144 0.856 18 C -0.165 4.165 19 C -0.145 4.145 20 C -0.122 4.122 21 C -0.053 4.053 22 C -0.141 4.141 23 C -0.124 4.124 24 C -0.152 4.152 25 C -0.136 4.136 26 C -0.119 4.119 27 N -0.078 5.078 28 N -0.156 5.156 29 H 0.085 0.915 30 H 0.223 0.777 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.222 0.778 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.145 0.855 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.852 -23.392 13.093 30.175 hybrid contribution 0.066 1.483 0.454 1.553 sum 13.919 -21.909 13.547 29.279 Atomic orbital electron populations 1.70186 1.09446 1.28954 1.36302 1.26963 0.95569 1.04864 0.91204 0.84957 0.79183 0.75371 0.78665 1.17291 1.19361 1.18951 1.21404 0.94572 0.90021 1.54791 0.89824 1.18578 0.86834 0.83942 0.76038 1.90555 1.15950 1.87790 1.57274 1.45829 1.09011 1.04148 1.81293 1.18879 0.90680 0.79541 1.01011 1.21844 1.04250 1.01774 0.89873 1.23393 0.96920 0.93542 1.01784 1.47776 1.29095 1.23910 1.05849 1.20716 0.95770 0.86310 0.88341 0.85555 1.22019 0.98619 0.93858 1.01984 1.21537 1.01795 0.98439 0.92777 1.20665 1.02665 0.90093 0.98740 1.19846 0.97071 0.97348 0.91077 1.21524 0.98831 0.95050 0.98705 1.21494 0.97678 0.95164 0.98082 1.21272 1.00455 1.00618 0.92844 1.21118 0.98999 0.94846 0.98598 1.19339 1.04175 0.94944 0.93442 1.78199 1.19303 1.16498 0.93847 1.75056 1.07829 1.05496 1.27207 0.91460 0.77717 0.93745 0.91228 0.77843 0.89974 0.90809 0.90296 0.88176 0.87891 0.89167 0.82901 0.83671 0.85484 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.92 11.83 21.83 0.26 -50.67 16 2 C 0.03 1.66 5.50 85.30 0.47 2.13 16 3 Si 1.00 41.83 29.56 68.60 2.03 43.86 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.57 -33.45 9.54 24.83 0.24 -33.21 16 8 H 0.08 4.46 7.85 -2.91 -0.02 4.43 16 9 C 0.54 32.63 7.75 86.36 0.67 33.30 16 10 O -0.63 -43.12 15.02 -4.33 -0.07 -43.18 16 11 N -0.75 -36.38 5.54 -471.14 -2.61 -38.99 16 12 C 0.23 9.65 6.23 85.63 0.53 10.19 16 13 C -0.04 -1.40 6.62 41.60 0.28 -1.13 16 14 C 0.00 -0.11 9.43 83.49 0.79 0.67 16 15 N -0.27 -6.96 2.69 -331.25 -0.89 -7.85 16 16 C 0.19 3.25 3.11 44.14 0.14 3.39 16 17 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 18 C -0.13 -1.56 5.57 30.62 0.17 -1.38 16 19 C -0.11 -0.69 5.98 30.61 0.18 -0.51 16 20 C -0.09 -0.55 5.67 29.74 0.17 -0.39 16 21 C -0.05 -0.66 5.74 -19.86 -0.11 -0.77 16 22 C -0.12 -1.42 9.61 22.36 0.21 -1.21 16 23 C -0.11 -1.49 10.05 22.20 0.22 -1.27 16 24 C -0.13 -2.48 10.05 22.20 0.22 -2.26 16 25 C -0.12 -2.44 8.20 22.36 0.18 -2.25 16 26 C -0.12 -1.99 4.91 -19.86 -0.10 -2.09 16 27 N -0.10 -3.25 13.17 37.02 0.49 -2.76 16 28 N -0.29 -11.05 12.41 -48.60 -0.60 -11.66 16 29 H 0.28 15.39 8.29 -92.71 -0.77 14.62 16 30 H 0.39 17.33 8.44 -92.71 -0.78 16.55 16 31 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.20 4.84 7.86 -2.91 -0.02 4.82 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 36 H 0.08 0.45 8.10 -2.39 -0.02 0.43 16 37 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 38 H 0.10 0.30 8.13 -2.39 -0.02 0.28 16 39 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.15 0.90 8.05 -2.91 -0.02 0.88 16 41 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 43 H 0.10 2.42 7.34 -2.91 -0.02 2.39 16 Total: -1.00 -82.38 362.62 3.12 -79.26 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.26 Total: 28.79 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 4.26 Total: 3.21 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -3.36 Total: -111.93 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.07 Total: -43.18 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -82.38 3.12 -79.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603202939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.246 kcal (2) G-P(sol) polarization free energy of solvation -82.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds