Wall clock time and date at job start Tue Mar 31 2020 14:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46502 * 119.99580 * 2 1 4 4 C 1.50704 * 109.47112 * 89.99688 * 3 2 1 5 5 C 1.38284 * 119.97705 * 270.02360 * 4 3 2 6 6 C 1.38245 * 120.11575 * 180.02562 * 5 4 3 7 7 C 1.38164 * 120.05396 * 359.67649 * 6 5 4 8 8 C 1.38715 * 119.93897 * 0.57702 * 7 6 5 9 9 O 1.35903 * 120.05363 * 179.71654 * 8 7 6 10 10 C 1.38123 * 119.96830 * 89.99761 * 4 3 2 11 11 C 1.34766 * 120.00356 * 179.97438 * 2 1 3 12 12 O 1.21584 * 120.00265 * 179.97438 * 11 2 1 13 13 N 1.34777 * 120.00327 * 0.02562 * 11 2 1 14 14 C 1.39240 * 120.00337 * 174.60384 * 13 11 2 15 15 C 1.39481 * 119.82944 * 326.69406 * 14 13 11 16 16 C 1.36381 * 120.16689 * 179.76343 * 15 14 13 17 17 C 1.40866 * 119.82694 * 0.53642 * 16 15 14 18 18 C 1.41155 * 120.16754 * 179.69528 * 17 16 15 19 19 H 1.08002 * 120.00194 * 156.07710 * 18 17 16 20 20 C 1.39896 * 119.99711 * 336.08318 * 18 17 16 21 21 N 1.30883 * 119.99887 * 340.63287 * 20 18 17 22 22 Si 1.86799 * 119.99897 * 160.62848 * 20 18 17 23 23 H 1.48500 * 109.47123 * 94.72956 * 22 20 18 24 24 H 1.48505 * 109.46990 * 214.72591 * 22 20 18 25 25 H 1.48503 * 109.47448 * 334.72499 * 22 20 18 26 26 C 1.40878 * 119.67289 * 359.71897 * 17 16 15 27 27 C 1.36369 * 119.82826 * 0.02562 * 26 17 16 28 28 H 1.09006 * 109.46686 * 90.00236 * 1 2 3 29 29 H 1.08998 * 109.46506 * 209.99262 * 1 2 3 30 30 H 1.08991 * 109.47488 * 330.00086 * 1 2 3 31 31 H 1.09007 * 109.47351 * 330.00216 * 3 2 1 32 32 H 1.08995 * 109.47136 * 209.99842 * 3 2 1 33 33 H 1.08001 * 119.94154 * 0.02562 * 5 4 3 34 34 H 1.08001 * 119.97223 * 179.97438 * 6 5 4 35 35 H 1.07997 * 120.03395 * 180.29696 * 7 6 5 36 36 H 0.96700 * 114.00297 * 269.73265 * 9 8 7 37 37 H 1.08000 * 120.02992 * 0.02562 * 10 4 3 38 38 H 0.97001 * 119.99518 * 354.59310 * 13 11 2 39 39 H 1.07992 * 119.91649 * 0.02562 * 15 14 13 40 40 H 1.07996 * 120.08853 * 180.25046 * 16 15 14 41 41 H 0.97001 * 119.99327 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.08570 * 179.97438 * 26 17 16 43 43 H 1.07996 * 119.91790 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 1.4209 5 6 1.5260 2.5018 2.0724 6 6 1.7537 2.9031 3.3756 7 6 2.9010 2.5020 4.0327 8 6 3.8305 1.7059 3.3795 9 8 4.9625 1.3148 4.0217 10 6 3.5998 1.3049 2.0714 11 6 2.1390 -1.1671 0.0005 12 8 3.3548 -1.1670 0.0001 13 7 1.4652 -2.3343 0.0005 14 6 2.1569 -3.5375 -0.1123 15 6 3.3215 -3.5991 -0.8774 16 6 4.0071 -4.7729 -0.9887 17 6 3.5300 -5.9274 -0.3378 18 6 4.2303 -7.1475 -0.4534 19 1 4.1214 -7.9068 0.3068 20 6 5.0656 -7.3730 -1.5528 21 7 4.9232 -6.6588 -2.6402 22 14 6.3842 -8.6934 -1.4685 23 1 5.8595 -9.9548 -2.0506 24 1 7.5763 -8.2523 -2.2364 25 1 6.7652 -8.9229 -0.0516 26 6 2.3500 -5.8585 0.4287 27 6 1.6782 -4.6765 0.5350 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8901 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 1.6083 2.0285 -0.5138 32 1 3.1499 1.1385 -0.5138 33 1 0.6261 2.8121 1.5622 34 1 1.0318 3.5266 3.8821 35 1 3.0762 2.8117 5.0523 36 1 5.7064 1.9230 3.9131 37 1 4.3200 0.6817 1.5622 38 1 0.4984 -2.3362 0.0793 39 1 3.6836 -2.7142 -1.3794 40 1 4.9109 -4.8182 -1.5782 41 1 5.5022 -6.8155 -3.4026 42 1 1.9780 -6.7397 0.9303 43 1 0.7733 -4.6222 1.1219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603827233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:52 Heat of formation + Delta-G solvation = -11.600488 kcal Electronic energy + Delta-G solvation = -26591.827274 eV Core-core repulsion = 22795.375425 eV Total energy + Delta-G solvation = -3796.451849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.33983 -39.56043 -37.61215 -36.85972 -35.25439 -34.45337 -32.99417 -31.64010 -29.92886 -29.42121 -28.86934 -27.43841 -25.98992 -24.43700 -22.65431 -21.94170 -21.27262 -20.76459 -19.23857 -18.27371 -17.75536 -17.25337 -16.62061 -16.45502 -15.76612 -15.68177 -15.36185 -15.05854 -14.69830 -14.02997 -13.93664 -13.80537 -13.40203 -13.07879 -12.86158 -12.71606 -12.59098 -12.38300 -12.21000 -11.97389 -11.87096 -11.78535 -11.46275 -11.27830 -11.06850 -11.02364 -10.64184 -10.60259 -9.95192 -9.65383 -9.46949 -9.11156 -8.95729 -8.85121 -8.74578 -8.54982 -7.45094 -6.92729 -6.68145 -4.22089 1.06602 1.21654 2.72193 2.94681 3.11032 3.11600 3.16411 3.21427 3.59460 3.73591 3.97846 4.10340 4.36258 4.66278 4.69265 4.73074 4.94877 5.02627 5.07785 5.17032 5.34172 5.45900 5.53502 5.62650 5.76687 5.79423 5.89215 6.20459 6.22320 6.34969 6.37455 6.45381 6.51795 6.71183 6.87708 6.89728 7.10783 7.15419 7.34255 7.37312 7.57691 7.67757 7.87133 8.06787 8.12082 8.32299 8.50099 8.69294 8.94818 8.98211 9.16368 10.22700 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.002756 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.579755 B =10156.305887 C =10941.803785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.635 5.635 3 C 0.174 3.826 4 C -0.089 4.089 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.146 4.146 8 C 0.101 3.899 9 O -0.497 6.497 10 C -0.115 4.115 11 C 0.697 3.303 12 O -0.572 6.572 13 N -0.665 5.665 14 C 0.013 3.987 15 C -0.085 4.085 16 C -0.155 4.155 17 C 0.104 3.896 18 C -0.460 4.460 19 H 0.077 0.923 20 C 0.076 3.924 21 N -0.790 5.790 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.215 4.215 27 C -0.107 4.107 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.388 0.612 37 H 0.139 0.861 38 H 0.389 0.611 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.280 0.720 42 H 0.095 0.905 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.342 19.021 5.846 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.373 5.373 3 C 0.051 3.949 4 C -0.091 4.091 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.165 4.165 8 C 0.057 3.943 9 O -0.307 6.307 10 C -0.133 4.133 11 C 0.400 3.600 12 O -0.448 6.448 13 N -0.312 5.312 14 C -0.079 4.079 15 C -0.106 4.106 16 C -0.175 4.175 17 C 0.101 3.899 18 C -0.489 4.489 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.415 5.415 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.235 4.235 27 C -0.128 4.128 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.244 0.756 37 H 0.157 0.843 38 H 0.224 0.776 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.711 18.556 5.727 20.547 hybrid contribution 0.228 -0.209 0.017 0.310 sum -6.483 18.347 5.744 20.289 Atomic orbital electron populations 1.21686 0.80301 1.02715 1.01523 1.47040 1.05950 1.04638 1.79694 1.20152 0.98619 0.84196 0.91974 1.20241 0.94155 0.97207 0.97485 1.21041 0.98834 0.98809 0.95027 1.20953 0.97045 1.00176 0.94782 1.21419 0.95667 0.98913 1.00485 1.18541 0.88780 0.96282 0.90743 1.84871 1.21012 1.51273 1.73565 1.21609 0.98838 0.99162 0.93740 1.15917 0.85510 0.80206 0.78410 1.90897 1.11319 1.85619 1.56989 1.42259 1.08990 1.03887 1.76071 1.16977 0.99538 0.83736 1.07664 1.20426 0.95021 0.97581 0.97528 1.20954 1.01034 0.91098 1.04427 1.17641 0.89612 0.92918 0.89684 1.19518 1.22337 1.01169 1.05883 0.90454 1.25915 0.97042 0.96868 0.94386 1.69867 1.33318 1.36120 1.02236 0.86349 0.80350 0.80655 0.79657 1.19646 1.20048 1.18409 1.20497 0.98046 0.96067 1.08934 1.19974 0.99757 0.93180 0.99860 0.92628 0.91633 0.91187 0.89777 0.88739 0.86042 0.85796 0.85714 0.75621 0.84340 0.77577 0.87960 0.86372 0.90912 0.88706 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.25 59.85 0.61 1.37 16 2 N -0.63 -8.56 2.86 -188.74 -0.54 -9.10 16 3 C 0.17 2.03 5.53 -5.19 -0.03 2.00 16 4 C -0.09 -1.07 5.46 -104.65 -0.57 -1.64 16 5 C -0.12 -1.14 9.70 -39.56 -0.38 -1.53 16 6 C -0.11 -1.04 10.04 -39.61 -0.40 -1.44 16 7 C -0.15 -1.57 9.99 -39.43 -0.39 -1.96 16 8 C 0.10 1.30 6.71 -39.22 -0.26 1.04 16 9 O -0.50 -6.18 13.50 -19.43 -0.26 -6.44 16 10 C -0.11 -1.61 9.64 -39.43 -0.38 -1.99 16 11 C 0.70 13.00 8.00 -86.93 -0.70 12.30 16 12 O -0.57 -12.86 13.09 5.29 0.07 -12.79 16 13 N -0.67 -12.46 5.19 -14.10 -0.07 -12.54 16 14 C 0.01 0.31 6.29 -83.57 -0.53 -0.21 16 15 C -0.09 -2.19 8.57 -39.79 -0.34 -2.54 16 16 C -0.16 -4.27 8.65 -39.26 -0.34 -4.61 16 17 C 0.10 2.86 5.58 -106.80 -0.60 2.27 16 18 C -0.46 -12.47 9.03 -37.86 -0.34 -12.81 16 19 H 0.08 2.01 7.92 -52.49 -0.42 1.59 16 20 C 0.08 1.95 5.10 -17.34 -0.09 1.86 16 21 N -0.79 -20.90 11.00 55.55 0.61 -20.29 16 22 Si 0.91 19.08 29.60 -169.99 -5.03 14.04 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 26 C -0.22 -5.38 9.74 -39.26 -0.38 -5.76 16 27 C -0.11 -2.44 9.89 -39.79 -0.39 -2.84 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.59 6.29 -51.93 -0.33 0.27 16 30 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 31 H 0.08 0.69 8.02 -51.92 -0.42 0.28 16 32 H 0.09 1.26 7.36 -51.93 -0.38 0.88 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.39 2.71 9.06 45.56 0.41 3.13 16 37 H 0.14 2.26 7.57 -52.49 -0.40 1.86 16 38 H 0.39 5.85 6.50 -40.82 -0.27 5.59 16 39 H 0.10 2.64 6.38 -52.49 -0.34 2.31 16 40 H 0.12 3.36 6.17 -52.49 -0.32 3.04 16 41 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 42 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 43 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -33.83 364.81 -9.78 -43.61 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -4.54 Total: 14.50 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -5.51 Total: -16.49 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.00 Total: -41.93 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.19 Total: -19.23 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.83 -9.78 -43.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603827233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.010 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds