Wall clock time and date at job start Tue Mar 31 2020 14:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46502 * 119.99580 * 2 1 4 4 C 1.50704 * 109.47112 * 89.99688 * 3 2 1 5 5 C 1.38284 * 119.97705 * 270.02360 * 4 3 2 6 6 C 1.38245 * 120.11575 * 180.02562 * 5 4 3 7 7 C 1.38164 * 120.05396 * 359.67649 * 6 5 4 8 8 C 1.38715 * 119.93897 * 0.57702 * 7 6 5 9 9 O 1.35903 * 120.05363 * 179.71654 * 8 7 6 10 10 C 1.38123 * 119.96830 * 89.99761 * 4 3 2 11 11 C 1.34766 * 120.00356 * 179.97438 * 2 1 3 12 12 O 1.21584 * 120.00265 * 179.97438 * 11 2 1 13 13 N 1.34777 * 120.00327 * 0.02562 * 11 2 1 14 14 C 1.39240 * 120.00337 * 174.60384 * 13 11 2 15 15 C 1.39481 * 119.82944 * 326.69406 * 14 13 11 16 16 C 1.36381 * 120.16689 * 179.76343 * 15 14 13 17 17 C 1.40866 * 119.82694 * 0.53642 * 16 15 14 18 18 C 1.41155 * 120.16754 * 179.69528 * 17 16 15 19 19 H 1.08002 * 120.00194 * 156.07710 * 18 17 16 20 20 C 1.39896 * 119.99711 * 336.08318 * 18 17 16 21 21 N 1.30883 * 119.99887 * 340.63287 * 20 18 17 22 22 Si 1.86799 * 119.99897 * 160.62848 * 20 18 17 23 23 H 1.48500 * 109.47123 * 94.72956 * 22 20 18 24 24 H 1.48505 * 109.46990 * 214.72591 * 22 20 18 25 25 H 1.48503 * 109.47448 * 334.72499 * 22 20 18 26 26 C 1.40878 * 119.67289 * 359.71897 * 17 16 15 27 27 C 1.36369 * 119.82826 * 0.02562 * 26 17 16 28 28 H 1.09006 * 109.46686 * 90.00236 * 1 2 3 29 29 H 1.08998 * 109.46506 * 209.99262 * 1 2 3 30 30 H 1.08991 * 109.47488 * 330.00086 * 1 2 3 31 31 H 1.09007 * 109.47351 * 330.00216 * 3 2 1 32 32 H 1.08995 * 109.47136 * 209.99842 * 3 2 1 33 33 H 1.08001 * 119.94154 * 0.02562 * 5 4 3 34 34 H 1.08001 * 119.97223 * 179.97438 * 6 5 4 35 35 H 1.07997 * 120.03395 * 180.29696 * 7 6 5 36 36 H 0.96700 * 114.00297 * 269.73265 * 9 8 7 37 37 H 1.08000 * 120.02992 * 0.02562 * 10 4 3 38 38 H 0.97001 * 119.99518 * 354.59310 * 13 11 2 39 39 H 1.07992 * 119.91649 * 0.02562 * 15 14 13 40 40 H 1.07996 * 120.08853 * 180.25046 * 16 15 14 41 41 H 0.97001 * 119.99327 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.08570 * 179.97438 * 26 17 16 43 43 H 1.07996 * 119.91790 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 1.4209 5 6 1.5260 2.5018 2.0724 6 6 1.7537 2.9031 3.3756 7 6 2.9010 2.5020 4.0327 8 6 3.8305 1.7059 3.3795 9 8 4.9625 1.3148 4.0217 10 6 3.5998 1.3049 2.0714 11 6 2.1390 -1.1671 0.0005 12 8 3.3548 -1.1670 0.0001 13 7 1.4652 -2.3343 0.0005 14 6 2.1569 -3.5375 -0.1123 15 6 3.3215 -3.5991 -0.8774 16 6 4.0071 -4.7729 -0.9887 17 6 3.5300 -5.9274 -0.3378 18 6 4.2303 -7.1475 -0.4534 19 1 4.1214 -7.9068 0.3068 20 6 5.0656 -7.3730 -1.5528 21 7 4.9232 -6.6588 -2.6402 22 14 6.3842 -8.6934 -1.4685 23 1 5.8595 -9.9548 -2.0506 24 1 7.5763 -8.2523 -2.2364 25 1 6.7652 -8.9229 -0.0516 26 6 2.3500 -5.8585 0.4287 27 6 1.6782 -4.6765 0.5350 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8901 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 1.6083 2.0285 -0.5138 32 1 3.1499 1.1385 -0.5138 33 1 0.6261 2.8121 1.5622 34 1 1.0318 3.5266 3.8821 35 1 3.0762 2.8117 5.0523 36 1 5.7064 1.9230 3.9131 37 1 4.3200 0.6817 1.5622 38 1 0.4984 -2.3362 0.0793 39 1 3.6836 -2.7142 -1.3794 40 1 4.9109 -4.8182 -1.5782 41 1 5.5022 -6.8155 -3.4026 42 1 1.9780 -6.7397 0.9303 43 1 0.7733 -4.6222 1.1219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603827233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:51 Heat of formation + Delta-G solvation = -33.685993 kcal Electronic energy + Delta-G solvation = -26592.784974 eV Core-core repulsion = 22795.375425 eV Total energy + Delta-G solvation = -3797.409549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63686 -40.61240 -39.30606 -37.93077 -36.47306 -36.18146 -34.74490 -32.64176 -31.40858 -30.90160 -30.60133 -28.29213 -27.37955 -26.01377 -23.53343 -23.26903 -23.06034 -22.25987 -20.71946 -19.47982 -19.21793 -18.86190 -18.05271 -17.35381 -17.21313 -16.72598 -16.62696 -16.37969 -15.88007 -15.77068 -15.35866 -14.93280 -14.69262 -14.52160 -14.27686 -13.96854 -13.78917 -13.70627 -13.46713 -13.28066 -13.18213 -13.03814 -12.88743 -12.74710 -12.68383 -12.39389 -12.29121 -11.75616 -11.53786 -11.50487 -11.21731 -10.93540 -10.69149 -9.89133 -9.69645 -9.55747 -9.44521 -8.83005 -8.58619 -6.24227 0.22577 0.34920 0.87772 1.14818 1.37363 1.46294 1.53936 1.77798 2.18983 2.22788 2.71641 2.76862 3.15063 3.27502 3.75694 3.82808 3.92755 4.18118 4.25284 4.27526 4.38165 4.42253 4.47164 4.62198 4.64226 4.78155 4.88735 4.93814 4.98014 5.03099 5.08689 5.17054 5.29772 5.42826 5.44685 5.47638 5.52157 5.61734 5.65925 5.78722 5.93272 6.07179 6.12245 6.15323 6.36101 6.68932 6.80955 6.93625 7.02787 7.05053 7.67000 8.33138 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.002756 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.579755 B =10156.305887 C =10941.803785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.624 5.624 3 C 0.171 3.829 4 C -0.097 4.097 5 C -0.108 4.108 6 C -0.102 4.102 7 C -0.149 4.149 8 C 0.081 3.919 9 O -0.519 6.519 10 C -0.149 4.149 11 C 0.689 3.311 12 O -0.620 6.620 13 N -0.659 5.659 14 C 0.027 3.973 15 C -0.099 4.099 16 C -0.180 4.180 17 C 0.072 3.928 18 C -0.496 4.496 19 H 0.080 0.920 20 C 0.032 3.968 21 N -0.825 5.825 22 Si 0.982 3.018 23 H -0.258 1.258 24 H -0.269 1.269 25 H -0.259 1.259 26 C -0.223 4.223 27 C -0.103 4.103 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.064 0.936 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.143 0.857 36 H 0.406 0.594 37 H 0.096 0.904 38 H 0.411 0.589 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.287 0.713 42 H 0.110 0.890 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 20.792 7.099 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.360 5.360 3 C 0.049 3.951 4 C -0.098 4.098 5 C -0.127 4.127 6 C -0.120 4.120 7 C -0.168 4.168 8 C 0.037 3.963 9 O -0.332 6.332 10 C -0.168 4.168 11 C 0.391 3.609 12 O -0.500 6.500 13 N -0.308 5.308 14 C -0.067 4.067 15 C -0.119 4.119 16 C -0.200 4.200 17 C 0.069 3.931 18 C -0.525 4.525 19 H 0.098 0.902 20 C -0.183 4.183 21 N -0.450 5.450 22 Si 0.802 3.198 23 H -0.182 1.182 24 H -0.194 1.194 25 H -0.183 1.183 26 C -0.243 4.243 27 C -0.123 4.123 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.082 0.918 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.160 0.840 36 H 0.265 0.735 37 H 0.115 0.885 38 H 0.249 0.751 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.128 0.872 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.961 20.392 6.983 23.745 hybrid contribution 1.113 -0.537 -0.326 1.278 sum -8.848 19.854 6.658 22.733 Atomic orbital electron populations 1.22060 0.77015 1.04670 1.03325 1.47088 1.07898 1.03272 1.77790 1.20349 0.98171 0.84252 0.92361 1.20289 0.94092 0.97980 0.97450 1.21414 0.99081 0.97050 0.95119 1.21430 0.96682 0.99249 0.94652 1.21683 0.95602 0.98209 1.01310 1.18770 0.89554 0.97347 0.90603 1.84801 1.22018 1.52763 1.73592 1.21506 0.99762 1.00693 0.94839 1.16222 0.85126 0.81441 0.78114 1.90881 1.13824 1.86523 1.58816 1.42050 1.09890 1.02662 1.76245 1.17032 0.98410 0.85668 1.05596 1.20439 0.96455 0.96516 0.98526 1.20841 1.01139 0.92271 1.05773 1.17975 0.91059 0.93117 0.90929 1.19785 1.24336 1.01502 1.06894 0.90209 1.26821 0.98716 0.99263 0.93468 1.69930 1.34341 1.37773 1.02995 0.85204 0.77131 0.77806 0.79628 1.18212 1.19362 1.18272 1.20781 0.97426 0.97653 1.08483 1.20325 1.00739 0.91967 0.99300 0.90879 0.91284 0.87684 0.85144 0.91785 0.82116 0.82061 0.83952 0.73526 0.88544 0.75058 0.89157 0.88691 0.90225 0.87158 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.25 127.77 1.31 2.32 16 2 N -0.62 -15.69 2.86 -869.31 -2.48 -18.17 16 3 C 0.17 3.76 5.53 85.63 0.47 4.23 16 4 C -0.10 -2.18 5.46 -19.88 -0.11 -2.29 16 5 C -0.11 -1.63 9.70 22.28 0.22 -1.41 16 6 C -0.10 -1.48 10.04 22.25 0.22 -1.26 16 7 C -0.15 -2.89 9.99 22.37 0.22 -2.67 16 8 C 0.08 2.13 6.71 22.51 0.15 2.28 16 9 O -0.52 -13.58 13.50 -92.46 -1.25 -14.83 16 10 C -0.15 -4.39 9.64 22.37 0.22 -4.18 16 11 C 0.69 25.78 8.00 179.06 1.43 27.21 16 12 O -0.62 -29.54 13.09 -3.98 -0.05 -29.60 16 13 N -0.66 -24.07 5.19 -316.79 -1.64 -25.71 16 14 C 0.03 1.26 6.29 38.57 0.24 1.50 16 15 C -0.10 -5.35 8.57 22.14 0.19 -5.16 16 16 C -0.18 -10.53 8.65 22.48 0.19 -10.33 16 17 C 0.07 4.11 5.58 -21.27 -0.12 3.99 16 18 C -0.50 -27.93 9.03 23.39 0.21 -27.72 16 19 H 0.08 4.27 7.92 -2.91 -0.02 4.25 16 20 C 0.03 1.70 5.10 85.24 0.44 2.14 16 21 N -0.82 -45.57 11.00 21.82 0.24 -45.33 16 22 Si 0.98 40.02 29.60 68.60 2.03 42.05 16 23 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 24 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 26 C -0.22 -11.24 9.74 22.48 0.22 -11.02 16 27 C -0.10 -4.59 9.89 22.13 0.22 -4.37 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.07 0.96 6.29 -2.39 -0.02 0.94 16 30 H 0.10 0.82 8.07 -2.39 -0.02 0.80 16 31 H 0.13 1.63 8.02 -2.38 -0.02 1.62 16 32 H 0.06 1.80 7.36 -2.39 -0.02 1.78 16 33 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.41 6.27 9.06 -74.06 -0.67 5.60 16 37 H 0.10 3.59 7.57 -2.91 -0.02 3.56 16 38 H 0.41 11.26 6.50 -92.71 -0.60 10.66 16 39 H 0.09 5.01 6.38 -2.91 -0.02 4.99 16 40 H 0.10 5.85 6.17 -2.91 -0.02 5.84 16 41 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 42 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 43 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -80.79 364.81 2.36 -78.43 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.21 Total: 39.89 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 5.73 Total: -26.73 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -3.89 Total: -89.21 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.30 Total: -44.43 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -80.79 2.36 -78.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603827233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.743 kcal (2) G-P(sol) polarization free energy of solvation -80.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds