Wall clock time and date at job start Tue Mar 31 2020 15:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99831 * 2 1 4 4 H 1.48500 * 109.47365 * 270.00511 * 3 2 1 5 5 H 1.48507 * 109.47153 * 30.00719 * 3 2 1 6 6 H 1.48498 * 109.47053 * 150.00126 * 3 2 1 7 7 C 1.37876 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00123 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00161 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47516 * 180.02562 * 9 7 2 11 11 C 1.36453 * 125.85441 * 85.02178 * 10 9 7 12 12 C 1.34953 * 108.94701 * 179.97438 * 11 10 9 13 13 C 1.41209 * 108.24791 * 0.02562 * 12 11 10 14 14 N 1.32927 * 126.37906 * 179.97438 * 13 12 11 15 15 C 1.33836 * 120.00121 * 0.02562 * 14 13 12 16 16 O 1.21833 * 120.00007 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00037 * 180.02562 * 15 14 13 18 18 C 1.46499 * 120.00170 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47123 * 179.97438 * 18 17 15 20 20 H 1.08996 * 112.50963 * 45.32578 * 19 18 17 21 21 C 1.52893 * 113.21926 * 175.19689 * 19 18 17 22 22 C 1.51436 * 84.72771 * 115.04917 * 21 19 18 23 23 C 1.38946 * 145.52430 * 179.32733 * 22 21 19 24 24 C 1.37977 * 120.32326 * 180.49305 * 23 22 21 25 25 C 1.38236 * 120.17874 * 0.27867 * 24 23 22 26 26 C 1.38185 * 119.74542 * 359.97438 * 25 24 23 27 27 C 1.38233 * 120.12404 * 359.97438 * 26 25 24 28 28 N 1.37425 * 107.23820 * 0.23998 * 13 12 11 29 29 H 0.97002 * 126.35730 * 179.75895 * 28 13 12 30 30 H 0.96994 * 120.00127 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47079 * 59.99795 * 9 7 2 32 32 H 1.08998 * 109.47454 * 300.00251 * 9 7 2 33 33 H 1.07994 * 125.52299 * 359.97438 * 11 10 9 34 34 H 1.07999 * 125.87445 * 180.02562 * 12 11 10 35 35 H 0.97009 * 120.00082 * 0.02562 * 17 15 14 36 36 H 1.08994 * 109.47128 * 59.99833 * 18 17 15 37 37 H 1.09005 * 109.46692 * 299.99755 * 18 17 15 38 38 H 1.08989 * 113.99148 * 229.17862 * 21 19 18 39 39 H 1.08997 * 113.98425 * 1.13853 * 21 19 18 40 40 H 1.08002 * 119.84212 * 0.77655 * 23 22 21 41 41 H 1.07999 * 119.91411 * 180.25784 * 24 23 22 42 42 H 1.08004 * 120.13255 * 179.97438 * 25 24 23 43 43 H 1.07998 * 119.93646 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0000 -2.5752 -0.0022 11 6 4.1755 -3.3600 -1.1046 12 6 4.6388 -4.5661 -0.7147 13 6 4.7656 -4.5574 0.6917 14 7 5.1911 -5.5619 1.4511 15 6 5.5498 -6.7216 0.8875 16 8 5.4868 -6.8565 -0.3217 17 7 5.9808 -7.7403 1.6576 18 6 6.3739 -9.0095 1.0406 19 6 6.8205 -9.9886 2.1283 20 1 6.1414 -10.0034 2.9807 21 6 7.1400 -11.3833 1.5896 22 6 8.5556 -11.0773 2.0320 23 6 9.8574 -11.5553 2.1179 24 6 10.8498 -10.7771 2.6777 25 6 10.5540 -9.5169 3.1629 26 6 9.2600 -9.0385 3.0848 27 6 8.2652 -9.8169 2.5232 28 7 4.3615 -3.3190 1.1294 29 1 4.3341 -3.0153 2.0503 30 1 -0.4850 0.8400 0.0004 31 1 3.8753 -0.6804 0.8888 32 1 3.8746 -0.6800 -0.8911 33 1 3.9760 -3.0639 -2.1238 34 1 4.8723 -5.3952 -1.3661 35 1 6.0306 -7.6331 2.6205 36 1 7.1972 -8.8369 0.3475 37 1 5.5254 -9.4289 0.4999 38 1 6.6644 -12.1922 2.1440 39 1 7.0245 -11.4784 0.5099 40 1 10.0947 -12.5391 1.7405 41 1 11.8603 -11.1536 2.7374 42 1 11.3313 -8.9086 3.6014 43 1 9.0254 -8.0546 3.4633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610326159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:15 Heat of formation + Delta-G solvation = 141.991887 kcal Electronic energy + Delta-G solvation = -25471.711031 eV Core-core repulsion = 21714.212198 eV Total energy + Delta-G solvation = -3757.498833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90817 -40.78363 -38.75945 -36.29633 -34.44308 -33.57990 -32.86520 -31.07384 -31.04484 -30.86088 -28.47217 -27.14661 -26.12737 -23.61553 -22.77512 -21.74085 -21.40977 -21.20631 -20.20876 -19.52455 -17.44264 -17.37064 -16.92889 -16.29110 -15.95418 -15.32261 -15.19565 -14.97017 -14.82886 -14.57701 -14.43770 -14.04737 -13.66419 -13.34268 -13.25206 -13.20564 -12.87710 -12.66151 -12.50843 -12.33871 -12.31529 -11.95971 -11.61397 -11.50177 -11.08415 -11.02896 -10.68237 -10.48813 -10.05564 -9.73502 -9.64673 -9.06306 -9.03913 -9.01637 -8.81885 -8.56609 -8.37881 -6.84696 -6.50994 -4.59367 1.11487 1.19941 1.74070 2.01497 2.96708 3.01237 3.07578 3.14037 3.53156 3.58979 3.89509 3.97896 4.19812 4.30995 4.51895 4.67073 4.74751 4.77745 4.83223 4.91603 5.09097 5.22349 5.33517 5.41759 5.44907 5.58766 5.66794 5.68335 5.75355 5.88842 5.93741 6.00649 6.08095 6.17774 6.19295 6.30189 6.35800 6.55408 6.68299 6.79258 6.94470 7.05596 7.33918 7.56221 7.75269 8.02120 8.29807 8.44245 8.53176 9.01477 9.61244 10.60559 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.031448 B = 0.001894 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.148210 B =14776.108819 C =15185.438190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.083 3.917 3 Si 0.875 3.125 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.564 4.564 8 H 0.085 0.915 9 C 0.230 3.770 10 N -0.346 5.346 11 C 0.164 3.836 12 C -0.330 4.330 13 C 0.490 3.510 14 N -0.711 5.711 15 C 0.685 3.315 16 O -0.632 6.632 17 N -0.729 5.729 18 C 0.155 3.845 19 C -0.053 4.053 20 H 0.100 0.900 21 C -0.067 4.067 22 C -0.131 4.131 23 C -0.101 4.101 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.085 4.085 27 C -0.121 4.121 28 N -0.471 5.471 29 H 0.445 0.555 30 H 0.272 0.728 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.188 0.812 34 H 0.184 0.816 35 H 0.397 0.603 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.701 -16.105 4.285 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.602 4.602 8 H 0.103 0.897 9 C 0.112 3.888 10 N -0.133 5.133 11 C 0.020 3.980 12 C -0.363 4.363 13 C 0.236 3.764 14 N -0.475 5.475 15 C 0.385 3.615 16 O -0.514 6.514 17 N -0.383 5.383 18 C 0.030 3.970 19 C -0.072 4.072 20 H 0.118 0.882 21 C -0.104 4.104 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.103 4.103 27 C -0.121 4.121 28 N -0.194 5.194 29 H 0.292 0.708 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.205 0.795 34 H 0.201 0.799 35 H 0.230 0.770 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.462 -15.750 4.372 23.199 hybrid contribution 0.291 1.103 0.343 1.192 sum 16.753 -14.646 4.715 22.747 Atomic orbital electron populations 1.69861 1.06247 1.27847 1.47238 1.24835 0.94868 0.98980 0.93667 0.86888 0.80203 0.83614 0.79265 1.19361 1.20318 1.18959 1.21272 0.87924 0.95897 1.55121 0.89655 1.20300 0.96756 0.72197 0.99591 1.47406 1.57602 1.11716 0.96534 1.22801 0.92764 0.90473 0.91964 1.22423 1.18418 1.00216 0.95199 1.18688 0.84723 0.83408 0.89613 1.68040 1.40809 1.01631 1.37041 1.16589 0.77795 0.83362 0.83795 1.90729 1.60889 1.84639 1.15119 1.44626 1.71390 1.12361 1.09939 1.20939 0.99651 0.82621 0.93802 1.21478 0.92287 0.94759 0.98673 0.88170 1.21748 0.90024 0.96391 1.02232 1.22353 0.94600 0.96665 0.99469 1.20522 0.91532 0.99853 1.00024 1.20947 0.98869 0.94741 0.99351 1.21032 0.96024 0.96166 1.00461 1.20271 0.91596 0.99480 0.98974 1.21670 0.96384 0.95734 0.98312 1.44357 1.62319 1.09483 1.03256 0.70844 0.91737 0.93419 0.92237 0.79515 0.79864 0.76992 0.91890 0.91376 0.88511 0.88366 0.86642 0.85938 0.85678 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.01 13.96 55.43 0.77 -23.24 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 17.94 27.47 -169.99 -4.67 13.27 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.06 6.54 56.52 0.37 -4.69 16 7 C -0.56 -13.72 9.94 -34.44 -0.34 -14.06 16 8 H 0.09 2.38 8.06 -52.49 -0.42 1.96 16 9 C 0.23 4.43 5.26 -5.20 -0.03 4.40 16 10 N -0.35 -6.29 3.63 -62.25 -0.23 -6.52 16 11 C 0.16 2.74 11.45 -16.66 -0.19 2.55 16 12 C -0.33 -6.18 9.52 -39.62 -0.38 -6.55 16 13 C 0.49 9.51 8.07 -155.29 -1.25 8.26 16 14 N -0.71 -14.03 10.59 -15.79 -0.17 -14.20 16 15 C 0.69 13.45 8.47 -87.76 -0.74 12.71 16 16 O -0.63 -13.80 13.26 5.07 0.07 -13.73 16 17 N -0.73 -11.08 5.56 -65.43 -0.36 -11.44 16 18 C 0.16 1.96 5.36 -4.04 -0.02 1.94 16 19 C -0.05 -0.52 3.75 -95.43 -0.36 -0.87 16 20 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 21 C -0.07 -0.53 8.01 -27.58 -0.22 -0.75 16 22 C -0.13 -1.30 7.32 -107.58 -0.79 -2.08 16 23 C -0.10 -0.93 10.05 -39.42 -0.40 -1.32 16 24 C -0.12 -1.05 10.03 -39.68 -0.40 -1.45 16 25 C -0.12 -1.10 10.06 -39.60 -0.40 -1.50 16 26 C -0.09 -0.90 10.04 -39.60 -0.40 -1.30 16 27 C -0.12 -1.30 7.00 -104.55 -0.73 -2.04 16 28 N -0.47 -8.31 7.38 31.33 0.23 -8.08 16 29 H 0.44 6.84 8.96 -182.55 -1.64 5.20 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.05 0.89 7.20 -51.93 -0.37 0.51 16 32 H 0.06 1.05 7.57 -51.93 -0.39 0.66 16 33 H 0.19 2.44 8.06 -52.49 -0.42 2.02 16 34 H 0.18 3.64 5.77 -52.49 -0.30 3.33 16 35 H 0.40 5.34 8.57 -40.82 -0.35 4.99 16 36 H 0.06 0.90 8.03 -51.93 -0.42 0.48 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.59 8.14 -51.94 -0.42 0.17 16 39 H 0.10 0.71 7.99 -51.93 -0.42 0.29 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -32.09 367.57 -12.42 -44.50 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -6.86 Total: 14.00 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -6.74 Total: -0.10 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.25 Total: -63.48 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.07 Total: -13.73 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -4.67 Total: 13.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.09 -12.42 -44.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.494 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds