Wall clock time and date at job start Tue Mar 31 2020 15:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99831 * 2 1 4 4 H 1.48500 * 109.47365 * 270.00511 * 3 2 1 5 5 H 1.48507 * 109.47153 * 30.00719 * 3 2 1 6 6 H 1.48498 * 109.47053 * 150.00126 * 3 2 1 7 7 C 1.37876 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00123 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00161 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47516 * 180.02562 * 9 7 2 11 11 C 1.36453 * 125.85441 * 85.02178 * 10 9 7 12 12 C 1.34953 * 108.94701 * 179.97438 * 11 10 9 13 13 C 1.41209 * 108.24791 * 0.02562 * 12 11 10 14 14 N 1.32927 * 126.37906 * 179.97438 * 13 12 11 15 15 C 1.33836 * 120.00121 * 0.02562 * 14 13 12 16 16 O 1.21833 * 120.00007 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00037 * 180.02562 * 15 14 13 18 18 C 1.46499 * 120.00170 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47123 * 179.97438 * 18 17 15 20 20 H 1.08996 * 112.50963 * 45.32578 * 19 18 17 21 21 C 1.52893 * 113.21926 * 175.19689 * 19 18 17 22 22 C 1.51436 * 84.72771 * 115.04917 * 21 19 18 23 23 C 1.38946 * 145.52430 * 179.32733 * 22 21 19 24 24 C 1.37977 * 120.32326 * 180.49305 * 23 22 21 25 25 C 1.38236 * 120.17874 * 0.27867 * 24 23 22 26 26 C 1.38185 * 119.74542 * 359.97438 * 25 24 23 27 27 C 1.38233 * 120.12404 * 359.97438 * 26 25 24 28 28 N 1.37425 * 107.23820 * 0.23998 * 13 12 11 29 29 H 0.97002 * 126.35730 * 179.75895 * 28 13 12 30 30 H 0.96994 * 120.00127 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47079 * 59.99795 * 9 7 2 32 32 H 1.08998 * 109.47454 * 300.00251 * 9 7 2 33 33 H 1.07994 * 125.52299 * 359.97438 * 11 10 9 34 34 H 1.07999 * 125.87445 * 180.02562 * 12 11 10 35 35 H 0.97009 * 120.00082 * 0.02562 * 17 15 14 36 36 H 1.08994 * 109.47128 * 59.99833 * 18 17 15 37 37 H 1.09005 * 109.46692 * 299.99755 * 18 17 15 38 38 H 1.08989 * 113.99148 * 229.17862 * 21 19 18 39 39 H 1.08997 * 113.98425 * 1.13853 * 21 19 18 40 40 H 1.08002 * 119.84212 * 0.77655 * 23 22 21 41 41 H 1.07999 * 119.91411 * 180.25784 * 24 23 22 42 42 H 1.08004 * 120.13255 * 179.97438 * 25 24 23 43 43 H 1.07998 * 119.93646 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0000 -2.5752 -0.0022 11 6 4.1755 -3.3600 -1.1046 12 6 4.6388 -4.5661 -0.7147 13 6 4.7656 -4.5574 0.6917 14 7 5.1911 -5.5619 1.4511 15 6 5.5498 -6.7216 0.8875 16 8 5.4868 -6.8565 -0.3217 17 7 5.9808 -7.7403 1.6576 18 6 6.3739 -9.0095 1.0406 19 6 6.8205 -9.9886 2.1283 20 1 6.1414 -10.0034 2.9807 21 6 7.1400 -11.3833 1.5896 22 6 8.5556 -11.0773 2.0320 23 6 9.8574 -11.5553 2.1179 24 6 10.8498 -10.7771 2.6777 25 6 10.5540 -9.5169 3.1629 26 6 9.2600 -9.0385 3.0848 27 6 8.2652 -9.8169 2.5232 28 7 4.3615 -3.3190 1.1294 29 1 4.3341 -3.0153 2.0503 30 1 -0.4850 0.8400 0.0004 31 1 3.8753 -0.6804 0.8888 32 1 3.8746 -0.6800 -0.8911 33 1 3.9760 -3.0639 -2.1238 34 1 4.8723 -5.3952 -1.3661 35 1 6.0306 -7.6331 2.6205 36 1 7.1972 -8.8369 0.3475 37 1 5.5254 -9.4289 0.4999 38 1 6.6644 -12.1922 2.1440 39 1 7.0245 -11.4784 0.5099 40 1 10.0947 -12.5391 1.7405 41 1 11.8603 -11.1536 2.7374 42 1 11.3313 -8.9086 3.6014 43 1 9.0254 -8.0546 3.4633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610326159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:15 Heat of formation + Delta-G solvation = 121.529994 kcal Electronic energy + Delta-G solvation = -25472.598326 eV Core-core repulsion = 21714.212198 eV Total energy + Delta-G solvation = -3758.386127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.27514 -41.61587 -40.17939 -37.15516 -35.94557 -34.91782 -34.52986 -32.59383 -32.50413 -31.64024 -29.53034 -28.55010 -27.07827 -24.67254 -24.18615 -23.05969 -22.66919 -22.21826 -21.30222 -20.62093 -19.25265 -18.80847 -17.73416 -17.59028 -17.22483 -16.60916 -16.42670 -16.18866 -16.04341 -15.75433 -15.56863 -15.27693 -14.80518 -14.76093 -14.48750 -14.28387 -14.18109 -13.90579 -13.83818 -13.41923 -13.15575 -13.03598 -12.77009 -12.59752 -12.43264 -12.22932 -11.83974 -11.78505 -11.32823 -11.25770 -11.14152 -10.90389 -10.50988 -9.93183 -9.91675 -9.73563 -9.50751 -8.41913 -8.32701 -6.55106 0.28637 0.40591 0.47322 0.59786 1.39986 1.41248 1.49802 1.67726 2.26718 2.32259 2.83897 2.90294 3.01450 3.12750 3.19902 3.52127 3.70080 3.89951 3.91829 4.21580 4.23238 4.27150 4.30274 4.42085 4.55058 4.63517 4.66294 4.70812 4.74810 4.83388 4.89198 4.95350 5.01032 5.16357 5.18114 5.22845 5.26500 5.50118 5.60275 5.72120 5.83463 5.94164 6.02859 6.10587 6.11282 6.44087 6.55681 6.90208 7.00703 7.11223 8.12897 8.74901 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.031448 B = 0.001894 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.148210 B =14776.108819 C =15185.438190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.256 1.256 5 H -0.289 1.289 6 H -0.233 1.233 7 C -0.566 4.566 8 H 0.033 0.967 9 C 0.235 3.765 10 N -0.350 5.350 11 C 0.179 3.821 12 C -0.347 4.347 13 C 0.473 3.527 14 N -0.721 5.721 15 C 0.671 3.329 16 O -0.661 6.661 17 N -0.717 5.717 18 C 0.159 3.841 19 C -0.046 4.046 20 H 0.112 0.888 21 C -0.056 4.056 22 C -0.142 4.142 23 C -0.111 4.111 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.106 4.106 27 C -0.148 4.148 28 N -0.466 5.466 29 H 0.453 0.547 30 H 0.273 0.727 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.226 0.774 34 H 0.172 0.828 35 H 0.405 0.595 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.901 -15.799 4.353 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.180 1.180 5 H -0.214 1.214 6 H -0.156 1.156 7 C -0.604 4.604 8 H 0.051 0.949 9 C 0.117 3.883 10 N -0.136 5.136 11 C 0.036 3.964 12 C -0.379 4.379 13 C 0.219 3.781 14 N -0.485 5.485 15 C 0.370 3.630 16 O -0.546 6.546 17 N -0.370 5.370 18 C 0.034 3.966 19 C -0.065 4.065 20 H 0.130 0.870 21 C -0.093 4.093 22 C -0.142 4.142 23 C -0.129 4.129 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.124 4.124 27 C -0.148 4.148 28 N -0.190 5.190 29 H 0.302 0.698 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.242 0.758 34 H 0.189 0.811 35 H 0.240 0.760 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 18.698 -15.480 4.477 24.684 hybrid contribution -0.413 0.911 0.332 1.054 sum 18.286 -14.569 4.809 23.869 Atomic orbital electron populations 1.70040 1.08705 1.28987 1.49656 1.25846 0.95557 1.03447 0.92997 0.85693 0.79629 0.77479 0.80026 1.18048 1.21444 1.15554 1.21443 0.90734 0.93871 1.54359 0.94909 1.20249 0.93252 0.72990 1.01847 1.47428 1.57485 1.11748 0.96954 1.23358 0.90594 0.89337 0.93116 1.22316 1.19810 1.00861 0.94961 1.18920 0.85116 0.83840 0.90253 1.68099 1.41325 1.01895 1.37230 1.16948 0.78087 0.84109 0.83848 1.90702 1.62339 1.85209 1.16335 1.44624 1.70001 1.12247 1.10172 1.21000 0.98824 0.82110 0.94642 1.21443 0.92094 0.94947 0.98006 0.87043 1.21805 0.88810 0.95720 1.02928 1.22671 0.95691 0.96468 0.99379 1.20860 0.91351 1.00871 0.99831 1.21311 1.00060 0.94378 0.98382 1.21325 0.95946 0.96833 1.00430 1.20474 0.92484 0.99685 0.99759 1.21886 0.96934 0.96636 0.99373 1.44362 1.61967 1.09011 1.03703 0.69835 0.91803 0.91514 0.88842 0.75770 0.81114 0.76006 0.93709 0.91543 0.86169 0.87677 0.84646 0.83467 0.83907 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.47 13.96 21.45 0.30 -52.17 16 2 C 0.02 1.10 5.47 84.65 0.46 1.56 16 3 Si 0.95 35.30 27.47 68.60 1.88 37.19 16 4 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 5 H -0.29 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.23 -7.39 6.54 99.48 0.65 -6.74 16 7 C -0.57 -27.31 9.94 25.60 0.25 -27.06 16 8 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 9 C 0.23 8.38 5.26 85.63 0.45 8.83 16 10 N -0.35 -12.10 3.63 -350.86 -1.28 -13.37 16 11 C 0.18 5.72 11.45 83.22 0.95 6.67 16 12 C -0.35 -12.97 9.52 22.24 0.21 -12.76 16 13 C 0.47 18.41 8.07 133.95 1.08 19.49 16 14 N -0.72 -28.83 10.59 -322.55 -3.42 -32.25 16 15 C 0.67 26.92 8.47 179.35 1.52 28.44 16 16 O -0.66 -29.72 13.26 -4.78 -0.06 -29.78 16 17 N -0.72 -22.16 5.56 -479.07 -2.66 -24.82 16 18 C 0.16 4.08 5.36 86.38 0.46 4.54 16 19 C -0.05 -0.87 3.75 -13.91 -0.05 -0.92 16 20 H 0.11 1.81 8.14 -2.39 -0.02 1.80 16 21 C -0.06 -0.80 8.01 30.05 0.24 -0.56 16 22 C -0.14 -2.66 7.32 -21.78 -0.16 -2.81 16 23 C -0.11 -1.86 10.05 22.38 0.22 -1.63 16 24 C -0.12 -1.95 10.03 22.21 0.22 -1.72 16 25 C -0.13 -2.25 10.06 22.26 0.22 -2.02 16 26 C -0.11 -2.24 10.04 22.26 0.22 -2.02 16 27 C -0.15 -3.15 7.00 -19.82 -0.14 -3.29 16 28 N -0.47 -16.09 7.38 -54.79 -0.40 -16.49 16 29 H 0.45 13.55 8.96 -213.28 -1.91 11.64 16 30 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.07 2.20 7.20 -2.39 -0.02 2.18 16 32 H 0.09 2.83 7.57 -2.39 -0.02 2.81 16 33 H 0.23 5.22 8.06 -2.91 -0.02 5.19 16 34 H 0.17 6.92 5.77 -2.91 -0.02 6.91 16 35 H 0.41 11.01 8.57 -92.70 -0.79 10.22 16 36 H 0.04 1.32 8.03 -2.39 -0.02 1.30 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 1.37 7.99 -2.39 -0.02 1.35 16 40 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -72.46 367.57 -1.16 -73.62 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -1.70 Total: 43.35 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.18 Total: 14.72 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -7.46 Total: -139.10 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.06 Total: -29.78 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 1.88 Total: 37.19 kcal Total: -72.46 -1.16 -73.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.150 kcal (2) G-P(sol) polarization free energy of solvation -72.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds