Wall clock time and date at job start Tue Mar 31 2020 15:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99725 * 2 1 4 4 H 1.48499 * 109.47351 * 240.00197 * 3 2 1 5 5 H 1.48506 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47235 * 120.00174 * 3 2 1 7 7 C 1.37874 * 120.00581 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00522 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99821 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.36459 * 125.85445 * 274.95748 * 10 9 7 12 12 C 1.34953 * 108.94895 * 179.75829 * 11 10 9 13 13 C 1.41205 * 108.24331 * 0.43894 * 12 11 10 14 14 N 1.32934 * 126.38100 * 179.82576 * 13 12 11 15 15 C 1.33835 * 119.99780 * 359.69068 * 14 13 12 16 16 O 1.21843 * 119.99830 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00420 * 180.02562 * 15 14 13 18 18 C 1.46499 * 120.00391 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46970 * 180.02562 * 18 17 15 20 20 H 1.08999 * 112.50744 * 314.66025 * 19 18 17 21 21 C 1.52884 * 113.16224 * 184.83847 * 19 18 17 22 22 C 1.51593 * 84.67318 * 244.77229 * 21 19 18 23 23 C 1.38951 * 145.53315 * 180.02562 * 22 21 19 24 24 C 1.37979 * 120.32254 * 179.97438 * 23 22 21 25 25 C 1.38238 * 120.17722 * 359.97438 * 24 23 22 26 26 C 1.38174 * 119.74893 * 0.04195 * 25 24 23 27 27 C 1.38236 * 120.12335 * 359.96039 * 26 25 24 28 28 N 1.37419 * 107.24458 * 359.56495 * 13 12 11 29 29 H 0.96999 * 126.36686 * 180.25714 * 28 13 12 30 30 H 0.96993 * 120.00659 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47402 * 59.99772 * 9 7 2 32 32 H 1.09004 * 109.47005 * 299.99860 * 9 7 2 33 33 H 1.07999 * 125.51887 * 0.05935 * 11 10 9 34 34 H 1.07998 * 125.88192 * 180.28537 * 12 11 10 35 35 H 0.96999 * 119.99625 * 0.02562 * 17 15 14 36 36 H 1.09000 * 109.46757 * 299.99822 * 18 17 15 37 37 H 1.08988 * 109.47120 * 60.00074 * 18 17 15 38 38 H 1.08996 * 113.99199 * 358.71957 * 21 19 18 39 39 H 1.09002 * 113.99150 * 130.83178 * 21 19 18 40 40 H 1.08001 * 119.84304 * 359.97321 * 23 22 21 41 41 H 1.07995 * 119.91378 * 180.02562 * 24 23 22 42 42 H 1.07996 * 120.12551 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.93652 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7953 -4.1580 -1.1024 12 6 3.6127 -5.1579 -0.7110 13 6 3.5364 -5.2666 0.6948 14 7 4.1930 -6.1372 1.4552 15 6 5.0183 -7.0279 0.8925 16 8 5.1675 -7.0411 -0.3167 17 7 5.6836 -7.9110 1.6632 18 6 6.5874 -8.8856 1.0473 19 6 7.2100 -9.7626 2.1356 20 1 7.5609 -9.1824 2.9890 21 6 8.2595 -10.7351 1.5970 22 6 7.2868 -11.8096 2.0413 23 6 7.0471 -13.1759 2.1206 24 6 5.8761 -13.6465 2.6786 25 6 4.9324 -12.7605 3.1637 26 6 5.1654 -11.4007 3.0871 27 6 6.3381 -10.9281 2.5282 28 7 2.6615 -4.3009 1.1312 29 1 2.4082 -4.1277 2.0513 30 1 -0.4851 0.8399 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6249 -2.5571 0.8897 33 1 2.6391 -3.8377 -2.1219 34 1 4.2189 -5.7712 -1.3612 35 1 5.5639 -7.9012 2.6257 36 1 6.0276 -9.5118 0.3526 37 1 7.3757 -8.3602 0.5085 38 1 8.3997 -10.6826 0.5174 39 1 9.1970 -10.7281 2.1531 40 1 7.7807 -13.8731 1.7437 41 1 5.6968 -14.7098 2.7372 42 1 4.0164 -13.1297 3.6006 43 1 4.4299 -10.7057 3.4648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610326160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:19 Heat of formation + Delta-G solvation = 135.516639 kcal Electronic energy + Delta-G solvation = -25444.753214 eV Core-core repulsion = 21686.973593 eV Total energy + Delta-G solvation = -3757.779621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87780 -40.71306 -38.71035 -36.27676 -34.39438 -33.58085 -32.86607 -31.00093 -30.95173 -30.59070 -28.39411 -26.84932 -26.03570 -23.64163 -23.06759 -21.73317 -21.38569 -21.14140 -20.19223 -19.49854 -17.41620 -16.95226 -16.87887 -16.21186 -15.91730 -15.30767 -15.15606 -14.90436 -14.83788 -14.60098 -14.30195 -14.11273 -13.66158 -13.31091 -13.23826 -13.10089 -12.68241 -12.60533 -12.39644 -12.32288 -11.97715 -11.91273 -11.58863 -11.35244 -11.06592 -11.03357 -10.54237 -10.47554 -10.38053 -9.68606 -9.55387 -9.00487 -8.99557 -8.90220 -8.80677 -8.53907 -8.32670 -6.86007 -6.46385 -4.63880 1.12735 1.21190 1.82517 2.12038 3.08442 3.13934 3.16191 3.20632 3.55222 3.62156 3.90177 4.07559 4.20672 4.38701 4.57485 4.71327 4.76286 4.83054 4.84512 4.92865 5.10152 5.30514 5.34202 5.42977 5.46007 5.60675 5.67848 5.73186 5.83092 5.94535 5.99704 6.06547 6.19933 6.28099 6.31499 6.55850 6.56579 6.58514 6.76298 6.80553 7.10620 7.38999 7.42517 7.53509 7.66484 7.89642 8.32878 8.45536 8.50225 9.06568 9.65988 10.54235 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.031118 B = 0.001870 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.586780 B =14970.962857 C =15303.730169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.255 3.745 10 N -0.346 5.346 11 C 0.161 3.839 12 C -0.334 4.334 13 C 0.487 3.513 14 N -0.714 5.714 15 C 0.685 3.315 16 O -0.633 6.633 17 N -0.730 5.730 18 C 0.155 3.845 19 C -0.053 4.053 20 H 0.100 0.900 21 C -0.067 4.067 22 C -0.131 4.131 23 C -0.101 4.101 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.085 4.085 27 C -0.121 4.121 28 N -0.472 5.472 29 H 0.444 0.556 30 H 0.272 0.728 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.186 0.814 34 H 0.183 0.817 35 H 0.396 0.604 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.902 -19.559 4.278 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.139 3.861 10 N -0.132 5.132 11 C 0.016 3.984 12 C -0.367 4.367 13 C 0.233 3.767 14 N -0.478 5.478 15 C 0.384 3.616 16 O -0.515 6.515 17 N -0.384 5.384 18 C 0.030 3.970 19 C -0.072 4.072 20 H 0.118 0.882 21 C -0.104 4.104 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.103 4.103 27 C -0.121 4.121 28 N -0.195 5.195 29 H 0.291 0.709 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.203 0.797 34 H 0.200 0.800 35 H 0.230 0.770 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.538 -19.264 4.368 21.935 hybrid contribution 0.163 0.955 0.345 1.028 sum 9.701 -18.309 4.712 21.250 Atomic orbital electron populations 1.69884 1.06125 1.28371 1.47995 1.24953 0.95012 0.99715 0.93842 0.86347 0.79427 0.81413 0.79181 1.19678 1.20826 1.19879 1.21388 0.94059 0.89588 1.54582 0.91271 1.20023 0.85621 0.79814 1.00626 1.47963 1.39957 1.29039 0.96285 1.22799 0.91358 0.92122 0.92093 1.22388 1.11743 1.07355 0.95186 1.18703 0.83887 0.84493 0.89619 1.68041 1.25854 1.16928 1.37012 1.16600 0.80219 0.80996 0.83781 1.90728 1.70106 1.75567 1.15135 1.44623 1.48078 1.35753 1.09938 1.20931 0.92745 0.89520 0.93798 1.21476 0.93121 0.93910 0.98683 0.88198 1.21781 0.96347 0.90062 1.02192 1.22390 0.97780 0.93477 0.99492 1.20522 0.97443 0.93915 1.00060 1.20947 0.94033 0.99585 0.99350 1.21031 0.99419 0.92767 1.00447 1.20272 0.95859 0.95220 0.98951 1.21664 0.94693 0.97377 0.98346 1.44434 1.42068 1.29445 1.03513 0.70925 0.91812 0.91445 0.93147 0.79674 0.80027 0.77035 0.91913 0.91440 0.88353 0.88544 0.86653 0.85938 0.85669 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.59 13.29 55.43 0.74 -21.86 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 19.34 29.54 -169.99 -5.02 14.32 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.56 -13.34 9.39 -34.44 -0.32 -13.66 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.26 5.36 6.19 -5.19 -0.03 5.33 16 10 N -0.35 -6.51 3.63 -62.24 -0.23 -6.74 16 11 C 0.16 2.78 11.45 -16.66 -0.19 2.59 16 12 C -0.33 -6.38 9.52 -39.62 -0.38 -6.76 16 13 C 0.49 9.63 8.07 -155.29 -1.25 8.38 16 14 N -0.71 -14.31 10.59 -15.79 -0.17 -14.48 16 15 C 0.68 13.62 8.47 -87.76 -0.74 12.88 16 16 O -0.63 -14.01 13.26 5.06 0.07 -13.94 16 17 N -0.73 -11.25 5.56 -65.43 -0.36 -11.61 16 18 C 0.16 1.99 5.36 -4.04 -0.02 1.97 16 19 C -0.05 -0.52 3.75 -95.44 -0.36 -0.88 16 20 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 21 C -0.07 -0.54 8.02 -27.50 -0.22 -0.76 16 22 C -0.13 -1.32 7.32 -107.52 -0.79 -2.11 16 23 C -0.10 -0.94 10.05 -39.41 -0.40 -1.34 16 24 C -0.12 -1.07 10.03 -39.68 -0.40 -1.47 16 25 C -0.12 -1.12 10.06 -39.60 -0.40 -1.51 16 26 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 27 C -0.12 -1.32 7.00 -104.55 -0.73 -2.05 16 28 N -0.47 -8.56 7.38 31.33 0.23 -8.33 16 29 H 0.44 7.10 8.96 -182.55 -1.64 5.46 16 30 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.19 2.53 8.06 -52.49 -0.42 2.11 16 34 H 0.18 3.67 5.77 -52.49 -0.30 3.37 16 35 H 0.40 5.42 8.57 -40.82 -0.35 5.07 16 36 H 0.06 0.91 8.03 -51.93 -0.42 0.49 16 37 H 0.07 0.87 8.14 -51.94 -0.42 0.45 16 38 H 0.10 0.72 7.99 -51.93 -0.41 0.30 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -30.52 371.18 -12.77 -43.29 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -6.89 Total: 12.83 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -6.73 Total: 0.92 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: 0.21 Total: -63.01 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.07 Total: -13.94 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.52 -12.77 -43.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.804 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds