Wall clock time and date at job start Tue Mar 31 2020 15:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99725 * 2 1 4 4 H 1.48499 * 109.47351 * 240.00197 * 3 2 1 5 5 H 1.48506 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47235 * 120.00174 * 3 2 1 7 7 C 1.37874 * 120.00581 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00522 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99821 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.36459 * 125.85445 * 274.95748 * 10 9 7 12 12 C 1.34953 * 108.94895 * 179.75829 * 11 10 9 13 13 C 1.41205 * 108.24331 * 0.43894 * 12 11 10 14 14 N 1.32934 * 126.38100 * 179.82576 * 13 12 11 15 15 C 1.33835 * 119.99780 * 359.69068 * 14 13 12 16 16 O 1.21843 * 119.99830 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00420 * 180.02562 * 15 14 13 18 18 C 1.46499 * 120.00391 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46970 * 180.02562 * 18 17 15 20 20 H 1.08999 * 112.50744 * 314.66025 * 19 18 17 21 21 C 1.52884 * 113.16224 * 184.83847 * 19 18 17 22 22 C 1.51593 * 84.67318 * 244.77229 * 21 19 18 23 23 C 1.38951 * 145.53315 * 180.02562 * 22 21 19 24 24 C 1.37979 * 120.32254 * 179.97438 * 23 22 21 25 25 C 1.38238 * 120.17722 * 359.97438 * 24 23 22 26 26 C 1.38174 * 119.74893 * 0.04195 * 25 24 23 27 27 C 1.38236 * 120.12335 * 359.96039 * 26 25 24 28 28 N 1.37419 * 107.24458 * 359.56495 * 13 12 11 29 29 H 0.96999 * 126.36686 * 180.25714 * 28 13 12 30 30 H 0.96993 * 120.00659 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47402 * 59.99772 * 9 7 2 32 32 H 1.09004 * 109.47005 * 299.99860 * 9 7 2 33 33 H 1.07999 * 125.51887 * 0.05935 * 11 10 9 34 34 H 1.07998 * 125.88192 * 180.28537 * 12 11 10 35 35 H 0.96999 * 119.99625 * 0.02562 * 17 15 14 36 36 H 1.09000 * 109.46757 * 299.99822 * 18 17 15 37 37 H 1.08988 * 109.47120 * 60.00074 * 18 17 15 38 38 H 1.08996 * 113.99199 * 358.71957 * 21 19 18 39 39 H 1.09002 * 113.99150 * 130.83178 * 21 19 18 40 40 H 1.08001 * 119.84304 * 359.97321 * 23 22 21 41 41 H 1.07995 * 119.91378 * 180.02562 * 24 23 22 42 42 H 1.07996 * 120.12551 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.93652 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7953 -4.1580 -1.1024 12 6 3.6127 -5.1579 -0.7110 13 6 3.5364 -5.2666 0.6948 14 7 4.1930 -6.1372 1.4552 15 6 5.0183 -7.0279 0.8925 16 8 5.1675 -7.0411 -0.3167 17 7 5.6836 -7.9110 1.6632 18 6 6.5874 -8.8856 1.0473 19 6 7.2100 -9.7626 2.1356 20 1 7.5609 -9.1824 2.9890 21 6 8.2595 -10.7351 1.5970 22 6 7.2868 -11.8096 2.0413 23 6 7.0471 -13.1759 2.1206 24 6 5.8761 -13.6465 2.6786 25 6 4.9324 -12.7605 3.1637 26 6 5.1654 -11.4007 3.0871 27 6 6.3381 -10.9281 2.5282 28 7 2.6615 -4.3009 1.1312 29 1 2.4082 -4.1277 2.0513 30 1 -0.4851 0.8399 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6249 -2.5571 0.8897 33 1 2.6391 -3.8377 -2.1219 34 1 4.2189 -5.7712 -1.3612 35 1 5.5639 -7.9012 2.6257 36 1 6.0276 -9.5118 0.3526 37 1 7.3757 -8.3602 0.5085 38 1 8.3997 -10.6826 0.5174 39 1 9.1970 -10.7281 2.1531 40 1 7.7807 -13.8731 1.7437 41 1 5.6968 -14.7098 2.7372 42 1 4.0164 -13.1297 3.6006 43 1 4.4299 -10.7057 3.4648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610326160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:18 Heat of formation + Delta-G solvation = 117.986918 kcal Electronic energy + Delta-G solvation = -25445.513359 eV Core-core repulsion = 21686.973593 eV Total energy + Delta-G solvation = -3758.539767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.24444 -41.60594 -40.15656 -37.14746 -35.96346 -34.92660 -34.50732 -32.47892 -32.26358 -31.62849 -29.40682 -28.29824 -27.06263 -24.95021 -24.27854 -23.06384 -22.64645 -22.21279 -21.29770 -20.62091 -18.97892 -18.61467 -17.71256 -17.56575 -17.20913 -16.61054 -16.48340 -16.18380 -16.00761 -15.70473 -15.63983 -15.31966 -14.80879 -14.55867 -14.47991 -14.14871 -14.13389 -13.90321 -13.64645 -13.37004 -13.06836 -13.03418 -12.76334 -12.71784 -12.42680 -12.29370 -12.08362 -11.77917 -11.31498 -11.20805 -11.13164 -10.75647 -10.48843 -9.90839 -9.90590 -9.73497 -9.50679 -8.52977 -8.18777 -6.54327 0.33473 0.40727 0.47397 0.62779 1.40673 1.43126 1.50218 1.69905 2.29940 2.36771 2.84056 2.94646 3.04298 3.13723 3.20647 3.52080 3.70650 3.90573 3.94721 4.21647 4.23550 4.29699 4.34238 4.49204 4.63851 4.67116 4.71982 4.74910 4.87218 4.88120 4.90454 5.00516 5.01720 5.18621 5.23441 5.28391 5.50180 5.52868 5.60361 5.72388 5.75276 5.84279 5.98939 6.11005 6.15607 6.37729 6.61488 6.92762 7.02605 7.19386 8.14931 8.67770 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.031118 B = 0.001870 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.586780 B =14970.962857 C =15303.730169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.030 3.970 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.566 4.566 8 H 0.060 0.940 9 C 0.268 3.732 10 N -0.350 5.350 11 C 0.177 3.823 12 C -0.347 4.347 13 C 0.471 3.529 14 N -0.722 5.722 15 C 0.671 3.329 16 O -0.662 6.662 17 N -0.717 5.717 18 C 0.159 3.841 19 C -0.046 4.046 20 H 0.112 0.888 21 C -0.055 4.055 22 C -0.142 4.142 23 C -0.111 4.111 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.106 4.106 27 C -0.149 4.149 28 N -0.467 5.467 29 H 0.451 0.549 30 H 0.274 0.726 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.223 0.777 34 H 0.172 0.828 35 H 0.405 0.595 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.925 -20.139 4.322 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.604 4.604 8 H 0.078 0.922 9 C 0.151 3.849 10 N -0.136 5.136 11 C 0.033 3.967 12 C -0.380 4.380 13 C 0.218 3.782 14 N -0.488 5.488 15 C 0.370 3.630 16 O -0.547 6.547 17 N -0.371 5.371 18 C 0.034 3.966 19 C -0.065 4.065 20 H 0.130 0.870 21 C -0.092 4.092 22 C -0.142 4.142 23 C -0.129 4.129 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.124 4.124 27 C -0.149 4.149 28 N -0.190 5.190 29 H 0.300 0.700 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.239 0.761 34 H 0.189 0.811 35 H 0.240 0.760 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.160 0.840 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.576 -19.869 4.445 22.943 hybrid contribution -0.168 1.054 0.346 1.122 sum 10.408 -18.815 4.791 22.029 Atomic orbital electron populations 1.69950 1.07110 1.29035 1.48974 1.25598 0.95638 1.02351 0.93677 0.85512 0.78317 0.78383 0.78957 1.19305 1.20496 1.20131 1.21592 0.93774 0.90938 1.54112 0.92216 1.19726 0.85456 0.79373 1.00341 1.47840 1.39998 1.28878 0.96905 1.23327 0.89576 0.90702 0.93085 1.22287 1.12598 1.08182 0.94913 1.18922 0.84235 0.84827 0.90252 1.68102 1.26184 1.17260 1.37206 1.16947 0.80597 0.81610 0.83843 1.90701 1.71143 1.76493 1.16328 1.44619 1.47359 1.34937 1.10174 1.20999 0.91935 0.88994 0.94638 1.21445 0.93467 0.93522 0.98031 0.86997 1.21841 0.96458 0.87973 1.02916 1.22719 0.98117 0.94032 0.99359 1.20863 0.98095 0.94109 0.99842 1.21310 0.93602 1.00844 0.98388 1.21319 1.00392 0.92404 1.00455 1.20471 0.96124 0.96058 0.99786 1.21892 0.95321 0.98259 0.99390 1.44405 1.41757 1.29051 1.03821 0.70011 0.91725 0.91092 0.93895 0.76063 0.81096 0.76040 0.93814 0.91452 0.87628 0.86129 0.84615 0.83475 0.83966 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.86 13.29 21.45 0.28 -45.58 16 2 C 0.03 1.43 5.46 84.65 0.46 1.89 16 3 Si 0.96 38.86 29.54 68.60 2.03 40.89 16 4 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.57 -26.51 9.39 25.60 0.24 -26.27 16 8 H 0.06 2.88 7.81 -2.91 -0.02 2.85 16 9 C 0.27 11.01 6.19 85.63 0.53 11.54 16 10 N -0.35 -12.82 3.63 -350.83 -1.28 -14.10 16 11 C 0.18 5.87 11.45 83.22 0.95 6.83 16 12 C -0.35 -13.19 9.52 22.24 0.21 -12.98 16 13 C 0.47 18.66 8.07 133.95 1.08 19.75 16 14 N -0.72 -29.22 10.59 -322.55 -3.42 -32.64 16 15 C 0.67 27.08 8.47 179.35 1.52 28.60 16 16 O -0.66 -29.87 13.26 -4.81 -0.06 -29.93 16 17 N -0.72 -22.28 5.56 -479.07 -2.66 -24.95 16 18 C 0.16 4.08 5.36 86.38 0.46 4.55 16 19 C -0.05 -0.86 3.75 -13.92 -0.05 -0.92 16 20 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 21 C -0.05 -0.78 8.02 30.09 0.24 -0.54 16 22 C -0.14 -2.67 7.32 -21.74 -0.16 -2.83 16 23 C -0.11 -1.88 10.05 22.38 0.22 -1.65 16 24 C -0.12 -1.99 10.03 22.21 0.22 -1.76 16 25 C -0.13 -2.31 10.06 22.25 0.22 -2.08 16 26 C -0.11 -2.30 10.04 22.25 0.22 -2.07 16 27 C -0.15 -3.19 7.00 -19.82 -0.14 -3.33 16 28 N -0.47 -16.74 7.38 -54.79 -0.40 -17.14 16 29 H 0.45 14.32 8.96 -213.28 -1.91 12.41 16 30 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 31 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.22 5.49 8.06 -2.91 -0.02 5.46 16 34 H 0.17 6.99 5.77 -2.91 -0.02 6.98 16 35 H 0.40 11.08 8.57 -92.71 -0.79 10.29 16 36 H 0.04 1.30 8.03 -2.39 -0.02 1.28 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.11 1.36 7.99 -2.39 -0.02 1.34 16 39 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 43 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -64.76 371.18 -0.91 -65.67 By element: Atomic # 1 Polarization: 40.72 SS G_CDS: -1.65 Total: 39.07 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 6.25 Total: 18.70 kcal Atomic # 7 Polarization: -126.93 SS G_CDS: -7.47 Total: -134.40 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.06 Total: -29.93 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -64.76 -0.91 -65.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.658 kcal (2) G-P(sol) polarization free energy of solvation -64.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds