Wall clock time and date at job start Tue Mar 31 2020 14:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35664 * 117.00129 * 2 1 4 4 C 1.39286 * 119.61850 * 179.97438 * 3 2 1 5 5 C 1.38327 * 119.30649 * 179.97438 * 4 3 2 6 6 C 1.38787 * 118.56065 * 359.97438 * 5 4 3 7 7 C 1.39132 * 119.18414 * 359.97438 * 6 5 4 8 8 C 1.48152 * 119.68706 * 179.97438 * 7 6 5 9 9 O 1.21525 * 119.99896 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00016 * 180.02562 * 8 7 6 11 11 C 1.46507 * 120.00273 * 184.89320 * 10 8 7 12 12 H 1.09003 * 109.46530 * 31.53335 * 11 10 8 13 13 C 1.52999 * 109.47440 * 151.52741 * 11 10 8 14 14 C 1.50699 * 109.47254 * 294.53229 * 13 11 10 15 15 H 1.08008 * 119.99964 * 354.98130 * 14 13 11 16 16 C 1.37872 * 120.00190 * 174.98222 * 14 13 11 17 17 N 1.31506 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00097 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47070 * 90.00171 * 18 16 14 20 20 H 1.48503 * 109.47233 * 210.00002 * 18 16 14 21 21 H 1.48498 * 109.47231 * 330.00328 * 18 16 14 22 22 C 1.50697 * 109.47389 * 271.53455 * 11 10 8 23 23 C 1.38231 * 120.00305 * 140.00006 * 22 11 10 24 24 C 1.38230 * 119.99890 * 180.02562 * 23 22 11 25 25 C 1.38234 * 120.00307 * 359.94746 * 24 23 22 26 26 C 1.38234 * 119.99718 * 0.02562 * 25 24 23 27 27 C 1.38230 * 119.99957 * 0.06748 * 26 25 24 28 28 N 1.31905 * 119.61733 * 0.24783 * 3 2 1 29 29 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47557 * 300.00508 * 1 2 3 31 31 H 1.09004 * 109.46934 * 60.00708 * 1 2 3 32 32 H 1.08003 * 120.34559 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.72057 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.40792 * 180.02562 * 6 5 4 35 35 H 0.96997 * 120.00170 * 4.89341 * 10 8 7 36 36 H 1.08997 * 109.46916 * 54.52556 * 13 11 10 37 37 H 1.08992 * 109.47494 * 174.53176 * 13 11 10 38 38 H 0.96997 * 120.00762 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.00106 * 359.96850 * 23 22 11 40 40 H 1.08005 * 119.99799 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.99955 * 179.72074 * 25 24 23 42 42 H 1.08002 * 119.99497 * 179.97438 * 26 25 24 43 43 H 1.08005 * 119.99784 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2724 0.0005 5 6 4.0576 2.5082 0.0000 6 6 3.2666 3.6486 -0.0016 7 6 1.8818 3.5136 -0.0032 8 6 1.0267 4.7235 -0.0043 9 8 1.5354 5.8271 -0.0044 10 7 -0.3153 4.6001 -0.0053 11 6 -1.1605 5.7918 -0.1147 12 1 -0.6499 6.5454 -0.7143 13 6 -2.4845 5.4184 -0.7843 14 6 -2.2258 4.9935 -2.2069 15 1 -1.2305 5.0670 -2.6199 16 6 -3.2595 4.5110 -2.9811 17 7 -4.4714 4.4221 -2.4785 18 14 -2.9388 3.9850 -4.7447 19 1 -2.5754 2.5454 -4.7735 20 1 -4.1630 4.2029 -5.5566 21 1 -1.8232 4.7885 -5.3058 22 6 -1.4314 6.3435 1.2612 23 6 -1.4301 7.7099 1.4706 24 6 -1.6781 8.2159 2.7328 25 6 -1.9285 7.3556 3.7855 26 6 -1.9304 5.9893 3.5759 27 6 -1.6805 5.4832 2.3141 28 7 1.3192 2.3102 0.0050 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 4.0240 0.3662 0.0005 33 1 5.1349 2.5842 0.0008 34 1 3.7203 4.6287 -0.0025 35 1 -0.7217 3.7223 0.0664 36 1 -2.9487 4.5970 -0.2386 37 1 -3.1507 6.2810 -0.7783 38 1 -5.1988 4.0830 -3.0233 39 1 -1.2343 8.3821 0.6482 40 1 -1.6766 9.2835 2.8965 41 1 -2.1178 7.7509 4.7726 42 1 -2.1257 5.3172 4.3985 43 1 -1.6816 4.4156 2.1505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749044582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:36 Heat of formation + Delta-G solvation = -15.266746 kcal Electronic energy + Delta-G solvation = -27239.327845 eV Core-core repulsion = 23442.717014 eV Total energy + Delta-G solvation = -3796.610830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80295 -39.50618 -38.51421 -37.51956 -35.23056 -33.01829 -32.53185 -31.15006 -30.63970 -30.40542 -28.78544 -27.34284 -25.34194 -24.11915 -22.90604 -22.30111 -21.95287 -20.86207 -19.75294 -18.40860 -17.60016 -16.84571 -16.16348 -16.07341 -16.05848 -15.74713 -15.49152 -14.92130 -14.53957 -14.36250 -14.28839 -14.10342 -13.64640 -13.26681 -13.13447 -12.99181 -12.65594 -12.50904 -12.28624 -12.11201 -11.76674 -11.56674 -11.16581 -11.15803 -10.92477 -10.74449 -10.61500 -10.51562 -10.18099 -10.04508 -9.78768 -9.44082 -9.27375 -8.64857 -8.53833 -8.45815 -8.39418 -8.19082 -6.08763 -4.11635 0.68651 1.20620 1.77678 1.80654 3.00875 3.01965 3.26799 3.34007 3.38489 3.52924 3.96521 4.13541 4.27026 4.40274 4.82265 4.93277 4.98874 5.21799 5.26419 5.27605 5.28369 5.32072 5.36952 5.40907 5.45595 5.54675 5.73606 5.86670 5.90987 5.93684 6.03592 6.16065 6.25536 6.35489 6.43357 6.57038 6.84956 6.85314 6.87017 7.09336 7.13707 7.40328 7.48911 7.55801 7.66577 7.87552 8.12928 8.25920 8.65934 8.93430 9.53042 11.01748 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007027 B = 0.005650 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3983.929637 B = 4954.900117 C = 7456.320061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.175 4.175 5 C -0.049 4.049 6 C -0.154 4.154 7 C 0.131 3.869 8 C 0.564 3.436 9 O -0.540 6.540 10 N -0.675 5.675 11 C 0.181 3.819 12 H 0.090 0.910 13 C 0.024 3.976 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.072 4.072 23 C -0.107 4.107 24 C -0.123 4.123 25 C -0.134 4.134 26 C -0.125 4.125 27 C -0.107 4.107 28 N -0.511 5.511 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.410 0.590 36 H 0.029 0.971 37 H 0.033 0.967 38 H 0.261 0.739 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.638 -4.471 9.596 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.216 6.216 3 C 0.138 3.862 4 C -0.196 4.196 5 C -0.075 4.075 6 C -0.175 4.175 7 C -0.006 4.006 8 C 0.348 3.652 9 O -0.417 6.417 10 N -0.323 5.323 11 C 0.077 3.923 12 H 0.108 0.892 13 C -0.013 4.013 14 C -0.556 4.556 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.073 4.073 23 C -0.126 4.126 24 C -0.141 4.141 25 C -0.152 4.152 26 C -0.143 4.143 27 C -0.125 4.125 28 N -0.238 5.238 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.246 0.754 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.945 -4.047 9.524 15.062 hybrid contribution 0.408 -0.706 -1.006 1.295 sum 11.353 -4.753 8.518 14.967 Atomic orbital electron populations 1.22951 0.76548 1.03134 1.03309 1.86212 1.23425 1.24155 1.87837 1.19786 0.89351 0.84581 0.92440 1.21234 0.91993 0.99739 1.06596 1.21404 1.00707 0.90887 0.94492 1.21992 0.93179 1.00749 1.01583 1.21012 0.92285 0.90416 0.96895 1.17833 0.82854 0.87028 0.77494 1.90751 1.74081 1.25750 1.51165 1.45825 1.04687 1.11504 1.70256 1.20358 0.94363 0.86635 0.90904 0.89244 1.19401 0.88914 0.97829 0.95194 1.21110 0.95050 1.42748 0.96677 0.92525 1.24952 0.95079 0.95671 0.98297 1.69948 1.00145 1.46243 1.36739 0.86624 0.77738 0.78949 0.84909 1.20713 1.21187 1.19868 1.20519 0.96898 0.93625 0.96269 1.21013 0.99726 0.94867 0.96995 1.21038 1.00670 0.99249 0.93125 1.20998 1.02026 0.93643 0.98577 1.21037 1.01015 0.95307 0.96908 1.20919 0.99515 0.99599 0.92506 1.67222 1.40925 0.98217 1.17416 0.88585 0.92005 0.91469 0.83860 0.83549 0.83245 0.75409 0.95295 0.94902 0.92888 0.86105 0.86571 0.86828 0.86741 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.31 -4.07 10.48 -18.69 -0.20 -4.27 16 3 C 0.32 4.44 7.49 -17.13 -0.13 4.31 16 4 C -0.17 -1.93 10.05 -39.16 -0.39 -2.33 16 5 C -0.05 -0.51 10.16 -39.35 -0.40 -0.91 16 6 C -0.15 -2.05 9.63 -39.05 -0.38 -2.43 16 7 C 0.13 2.14 6.75 -83.02 -0.56 1.58 16 8 C 0.56 10.71 7.79 -12.19 -0.10 10.62 16 9 O -0.54 -11.34 15.97 5.34 0.09 -11.25 16 10 N -0.67 -13.02 3.99 -55.78 -0.22 -13.24 16 11 C 0.18 3.75 2.12 -69.08 -0.15 3.61 16 12 H 0.09 1.98 7.40 -51.93 -0.38 1.60 16 13 C 0.02 0.58 4.51 -27.88 -0.13 0.45 16 14 C -0.52 -13.84 8.85 -34.44 -0.30 -14.14 16 15 H 0.06 1.53 7.75 -52.48 -0.41 1.13 16 16 C 0.06 1.69 5.46 -17.83 -0.10 1.60 16 17 N -0.89 -25.54 13.28 55.43 0.74 -24.81 16 18 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 22 C -0.07 -1.35 4.95 -104.63 -0.52 -1.87 16 23 C -0.11 -1.86 9.67 -39.59 -0.38 -2.25 16 24 C -0.12 -1.84 10.05 -39.59 -0.40 -2.24 16 25 C -0.13 -1.92 10.05 -39.58 -0.40 -2.31 16 26 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 27 C -0.11 -1.85 9.32 -39.59 -0.37 -2.22 16 28 N -0.51 -8.06 8.39 -9.87 -0.08 -8.14 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 32 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 33 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.15 1.90 7.63 -52.49 -0.40 1.50 16 35 H 0.41 7.71 7.97 -40.82 -0.33 7.38 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.12 1.99 8.04 -52.49 -0.42 1.56 16 40 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.12 1.92 7.72 -52.48 -0.40 1.52 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -31.48 375.97 -8.78 -40.26 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.70 Total: 8.86 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -4.04 Total: -9.33 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.43 Total: -46.19 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.11 Total: -15.52 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.48 -8.78 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749044582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.992 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds