Wall clock time and date at job start Tue Mar 31 2020 14:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35664 * 117.00129 * 2 1 4 4 C 1.39286 * 119.61850 * 179.97438 * 3 2 1 5 5 C 1.38327 * 119.30649 * 179.97438 * 4 3 2 6 6 C 1.38787 * 118.56065 * 359.97438 * 5 4 3 7 7 C 1.39132 * 119.18414 * 359.97438 * 6 5 4 8 8 C 1.48152 * 119.68706 * 179.97438 * 7 6 5 9 9 O 1.21525 * 119.99896 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00016 * 180.02562 * 8 7 6 11 11 C 1.46507 * 120.00273 * 184.89320 * 10 8 7 12 12 H 1.09003 * 109.46530 * 31.53335 * 11 10 8 13 13 C 1.52999 * 109.47440 * 151.52741 * 11 10 8 14 14 C 1.50699 * 109.47254 * 294.53229 * 13 11 10 15 15 H 1.08008 * 119.99964 * 354.98130 * 14 13 11 16 16 C 1.37872 * 120.00190 * 174.98222 * 14 13 11 17 17 N 1.31506 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00097 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47070 * 90.00171 * 18 16 14 20 20 H 1.48503 * 109.47233 * 210.00002 * 18 16 14 21 21 H 1.48498 * 109.47231 * 330.00328 * 18 16 14 22 22 C 1.50697 * 109.47389 * 271.53455 * 11 10 8 23 23 C 1.38231 * 120.00305 * 140.00006 * 22 11 10 24 24 C 1.38230 * 119.99890 * 180.02562 * 23 22 11 25 25 C 1.38234 * 120.00307 * 359.94746 * 24 23 22 26 26 C 1.38234 * 119.99718 * 0.02562 * 25 24 23 27 27 C 1.38230 * 119.99957 * 0.06748 * 26 25 24 28 28 N 1.31905 * 119.61733 * 0.24783 * 3 2 1 29 29 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47557 * 300.00508 * 1 2 3 31 31 H 1.09004 * 109.46934 * 60.00708 * 1 2 3 32 32 H 1.08003 * 120.34559 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.72057 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.40792 * 180.02562 * 6 5 4 35 35 H 0.96997 * 120.00170 * 4.89341 * 10 8 7 36 36 H 1.08997 * 109.46916 * 54.52556 * 13 11 10 37 37 H 1.08992 * 109.47494 * 174.53176 * 13 11 10 38 38 H 0.96997 * 120.00762 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.00106 * 359.96850 * 23 22 11 40 40 H 1.08005 * 119.99799 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.99955 * 179.72074 * 25 24 23 42 42 H 1.08002 * 119.99497 * 179.97438 * 26 25 24 43 43 H 1.08005 * 119.99784 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2724 0.0005 5 6 4.0576 2.5082 0.0000 6 6 3.2666 3.6486 -0.0016 7 6 1.8818 3.5136 -0.0032 8 6 1.0267 4.7235 -0.0043 9 8 1.5354 5.8271 -0.0044 10 7 -0.3153 4.6001 -0.0053 11 6 -1.1605 5.7918 -0.1147 12 1 -0.6499 6.5454 -0.7143 13 6 -2.4845 5.4184 -0.7843 14 6 -2.2258 4.9935 -2.2069 15 1 -1.2305 5.0670 -2.6199 16 6 -3.2595 4.5110 -2.9811 17 7 -4.4714 4.4221 -2.4785 18 14 -2.9388 3.9850 -4.7447 19 1 -2.5754 2.5454 -4.7735 20 1 -4.1630 4.2029 -5.5566 21 1 -1.8232 4.7885 -5.3058 22 6 -1.4314 6.3435 1.2612 23 6 -1.4301 7.7099 1.4706 24 6 -1.6781 8.2159 2.7328 25 6 -1.9285 7.3556 3.7855 26 6 -1.9304 5.9893 3.5759 27 6 -1.6805 5.4832 2.3141 28 7 1.3192 2.3102 0.0050 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 4.0240 0.3662 0.0005 33 1 5.1349 2.5842 0.0008 34 1 3.7203 4.6287 -0.0025 35 1 -0.7217 3.7223 0.0664 36 1 -2.9487 4.5970 -0.2386 37 1 -3.1507 6.2810 -0.7783 38 1 -5.1988 4.0830 -3.0233 39 1 -1.2343 8.3821 0.6482 40 1 -1.6766 9.2835 2.8965 41 1 -2.1178 7.7509 4.7726 42 1 -2.1257 5.3172 4.3985 43 1 -1.6816 4.4156 2.1505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749044582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:35 Heat of formation + Delta-G solvation = -35.149905 kcal Electronic energy + Delta-G solvation = -27240.190043 eV Core-core repulsion = 23442.717014 eV Total energy + Delta-G solvation = -3797.473029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92410 -40.86795 -39.78290 -38.62528 -36.86262 -34.81597 -33.84014 -32.48274 -31.79428 -31.63259 -30.55679 -28.35657 -26.99474 -25.45014 -23.92284 -23.81419 -23.39093 -22.19916 -21.25386 -19.61088 -18.81457 -18.61356 -17.72989 -17.12956 -17.06051 -16.97418 -16.90095 -16.46191 -16.29057 -15.69261 -15.55221 -15.16593 -14.93448 -14.56433 -14.34036 -14.24224 -14.20480 -13.99465 -13.72080 -13.47120 -13.20869 -12.96894 -12.71028 -12.68823 -12.53432 -12.21206 -12.15606 -11.91007 -11.66158 -11.53858 -11.36572 -11.01360 -10.70242 -10.58666 -10.08416 -9.77743 -9.61706 -9.54495 -8.23196 -6.32940 -0.40045 0.24203 0.48628 0.54029 1.34751 1.36155 1.46779 1.70883 2.04412 2.16519 2.36421 2.79778 2.91513 3.03837 3.11209 3.83689 3.93475 3.96754 4.00328 4.02889 4.18884 4.25404 4.30377 4.38535 4.41594 4.44329 4.50267 4.62144 4.73192 4.76211 4.79018 4.94518 5.09092 5.10497 5.17401 5.21127 5.35007 5.38063 5.55257 5.59207 5.62286 5.73892 5.84401 6.10760 6.13209 6.17769 6.43776 6.71952 6.77951 7.15370 7.35247 8.87517 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007027 B = 0.005650 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3983.929637 B = 4954.900117 C = 7456.320061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C 0.298 3.702 4 C -0.156 4.156 5 C -0.033 4.033 6 C -0.151 4.151 7 C 0.097 3.903 8 C 0.561 3.439 9 O -0.569 6.569 10 N -0.676 5.676 11 C 0.196 3.804 12 H 0.065 0.935 13 C 0.039 3.961 14 C -0.529 4.529 15 H 0.047 0.953 16 C 0.015 3.985 17 N -0.923 5.923 18 Si 0.952 3.048 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.273 1.273 22 C -0.099 4.099 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.123 4.123 28 N -0.534 5.534 29 H 0.126 0.874 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.180 0.820 33 H 0.196 0.804 34 H 0.153 0.847 35 H 0.409 0.591 36 H 0.011 0.989 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.117 0.883 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.144 0.856 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.648 -5.530 10.778 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.218 6.218 3 C 0.116 3.884 4 C -0.177 4.177 5 C -0.057 4.057 6 C -0.172 4.172 7 C -0.039 4.039 8 C 0.347 3.653 9 O -0.449 6.449 10 N -0.323 5.323 11 C 0.092 3.908 12 H 0.083 0.917 13 C 0.002 3.998 14 C -0.567 4.567 15 H 0.065 0.935 16 C -0.184 4.184 17 N -0.562 5.562 18 Si 0.778 3.222 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.198 1.198 22 C -0.100 4.100 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.142 4.142 28 N -0.261 5.261 29 H 0.145 0.855 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.197 0.803 33 H 0.213 0.787 34 H 0.170 0.830 35 H 0.245 0.755 36 H 0.030 0.970 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.165 0.835 41 H 0.171 0.829 42 H 0.162 0.838 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.957 -5.108 10.709 17.569 hybrid contribution -0.175 -0.400 -1.304 1.375 sum 12.782 -5.508 9.406 16.798 Atomic orbital electron populations 1.23017 0.76241 1.04694 1.01957 1.86216 1.23758 1.23842 1.87956 1.20259 0.90687 0.84181 0.93274 1.21736 0.90811 1.01510 1.03615 1.21914 1.02658 0.89117 0.92058 1.22197 0.92087 1.02329 1.00617 1.20659 0.92985 0.89483 1.00752 1.18319 0.82633 0.87972 0.76368 1.90707 1.74436 1.27171 1.52590 1.45742 1.05110 1.10861 1.70592 1.19883 0.92289 0.86586 0.92083 0.91661 1.19126 0.90374 0.95891 0.94442 1.21329 0.94651 1.42741 0.97949 0.93467 1.25711 0.94820 0.95653 1.02254 1.70052 1.00916 1.47005 1.38276 0.85642 0.77694 0.78788 0.80099 1.19786 1.20397 1.19808 1.20397 0.99451 0.94716 0.95443 1.21184 1.00810 0.94301 0.98497 1.21411 0.99245 1.01147 0.92050 1.21480 0.99851 0.93085 1.00025 1.21410 0.99766 0.96557 0.96518 1.21018 1.00421 0.99330 0.93410 1.67033 1.42167 0.98634 1.18286 0.85546 0.92524 0.93686 0.80261 0.78684 0.82955 0.75453 0.97024 0.97433 0.92626 0.86473 0.83461 0.82900 0.83790 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.38 113.37 1.18 2.02 16 2 O -0.31 -7.85 10.48 -89.80 -0.94 -8.79 16 3 C 0.30 7.96 7.49 84.93 0.64 8.59 16 4 C -0.16 -2.93 10.05 22.54 0.23 -2.71 16 5 C -0.03 -0.56 10.16 22.42 0.23 -0.33 16 6 C -0.15 -3.86 9.63 22.62 0.22 -3.64 16 7 C 0.10 3.24 6.75 41.84 0.28 3.52 16 8 C 0.56 22.62 7.79 86.88 0.68 23.30 16 9 O -0.57 -25.28 15.97 -3.79 -0.06 -25.34 16 10 N -0.68 -28.12 3.99 -448.68 -1.79 -29.91 16 11 C 0.20 8.80 2.12 44.24 0.09 8.90 16 12 H 0.07 3.18 7.40 -2.39 -0.02 3.16 16 13 C 0.04 2.03 4.51 29.85 0.13 2.17 16 14 C -0.53 -29.76 8.85 25.60 0.23 -29.54 16 15 H 0.05 2.69 7.75 -2.91 -0.02 2.67 16 16 C 0.01 0.82 5.46 84.65 0.46 1.28 16 17 N -0.92 -54.48 13.28 21.44 0.28 -54.20 16 18 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 22 C -0.10 -3.93 4.95 -19.87 -0.10 -4.03 16 23 C -0.13 -4.64 9.67 22.27 0.22 -4.43 16 24 C -0.12 -3.45 10.05 22.27 0.22 -3.23 16 25 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 26 C -0.12 -3.59 10.05 22.27 0.22 -3.36 16 27 C -0.12 -4.39 9.32 22.27 0.21 -4.19 16 28 N -0.53 -17.20 8.39 -298.20 -2.50 -19.71 16 29 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 31 H 0.04 1.24 8.11 -2.38 -0.02 1.22 16 32 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.15 3.75 7.63 -2.91 -0.02 3.73 16 35 H 0.41 16.79 7.97 -92.71 -0.74 16.05 16 36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 39 H 0.12 4.12 8.04 -2.91 -0.02 4.10 16 40 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 41 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 42 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 43 H 0.11 3.93 7.72 -2.91 -0.02 3.90 16 Total: -1.00 -72.36 375.97 2.66 -69.70 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.29 Total: 30.40 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.36 Total: -8.73 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -4.01 Total: -103.82 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.00 Total: -34.13 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -72.36 2.66 -69.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749044582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.550 kcal (2) G-P(sol) polarization free energy of solvation -72.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds