Wall clock time and date at job start Tue Mar 31 2020 14:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35665 * 117.00242 * 2 1 4 4 C 1.39286 * 119.61736 * 179.72502 * 3 2 1 5 5 C 1.38331 * 119.30611 * 179.76982 * 4 3 2 6 6 C 1.38783 * 118.55663 * 0.49942 * 5 4 3 7 7 C 1.39123 * 119.18950 * 359.74881 * 6 5 4 8 8 C 1.48148 * 119.68938 * 180.02562 * 7 6 5 9 9 O 1.21512 * 120.00294 * 359.97000 * 8 7 6 10 10 N 1.34778 * 120.00023 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00094 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47112 * 324.99985 * 11 10 8 13 13 C 1.53003 * 109.47319 * 204.99462 * 11 10 8 14 14 C 1.50701 * 109.46731 * 65.00290 * 13 11 10 15 15 H 1.07999 * 120.00065 * 359.97438 * 14 13 11 16 16 C 1.37874 * 119.99984 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99941 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00150 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47252 * 89.99907 * 18 16 14 20 20 H 1.48497 * 109.47527 * 210.00154 * 18 16 14 21 21 H 1.48502 * 109.47219 * 330.00447 * 18 16 14 22 22 C 1.50701 * 109.46819 * 85.00054 * 11 10 8 23 23 C 1.38231 * 120.00319 * 39.72341 * 22 11 10 24 24 C 1.38238 * 119.99965 * 179.80917 * 23 22 11 25 25 C 1.38228 * 119.99987 * 0.39958 * 24 23 22 26 26 C 1.38229 * 120.00185 * 359.85801 * 25 24 23 27 27 C 1.38239 * 120.00217 * 359.95133 * 26 25 24 28 28 N 1.31892 * 119.61554 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46969 * 59.99619 * 1 2 3 30 30 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46864 * 300.00238 * 1 2 3 32 32 H 1.08008 * 120.34761 * 0.02779 * 4 3 2 33 33 H 1.08004 * 120.72013 * 180.24326 * 5 4 3 34 34 H 1.08004 * 120.40463 * 179.76661 * 6 5 4 35 35 H 0.97007 * 119.99874 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.47214 * 185.00200 * 13 11 10 37 37 H 1.08996 * 109.47111 * 305.00318 * 13 11 10 38 38 H 0.97003 * 120.00357 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.00050 * 0.02562 * 23 22 11 40 40 H 1.08000 * 119.99774 * 180.23100 * 24 23 22 41 41 H 1.08001 * 120.00038 * 179.83337 * 25 24 23 42 42 H 1.08005 * 120.00389 * 179.97438 * 26 25 24 43 43 H 1.07992 * 120.00348 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4364 1.2723 0.0058 5 6 4.0578 2.5082 0.0009 6 6 3.2667 3.6485 0.0010 7 6 1.8820 3.5137 0.0006 8 6 1.0270 4.7235 0.0000 9 8 1.5356 5.8270 0.0005 10 7 -0.3151 4.6001 -0.0009 11 6 -1.1607 5.7965 -0.0009 12 1 -0.6833 6.5788 0.5893 13 6 -2.5231 5.4581 0.6076 14 6 -2.3482 5.0935 2.0593 15 1 -1.3638 5.1019 2.5034 16 6 -3.4449 4.7483 2.8204 17 7 -3.2922 4.4296 4.0871 18 14 -5.1475 4.7331 2.0522 19 1 -5.4250 3.3870 1.4900 20 1 -6.1611 5.0553 3.0885 21 1 -5.2100 5.7451 0.9671 22 6 -1.3485 6.2788 -1.4162 23 6 -1.5340 5.3669 -2.4383 24 6 -1.7102 5.8095 -3.7360 25 6 -1.6928 7.1637 -4.0127 26 6 -1.5021 8.0754 -2.9914 27 6 -1.3297 7.6330 -1.6931 28 7 1.3193 2.3101 0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.0241 0.3661 0.0098 33 1 5.1352 2.5841 0.0013 34 1 3.7205 4.6286 0.0010 35 1 -0.7212 3.7192 -0.0016 36 1 -3.1819 6.3227 0.5269 37 1 -2.9613 4.6162 0.0718 38 1 -4.0637 4.1871 4.6227 39 1 -1.5446 4.3087 -2.2226 40 1 -1.8588 5.0971 -4.5340 41 1 -1.8278 7.5094 -5.0269 42 1 -1.4880 9.1335 -3.2076 43 1 -1.1811 8.3453 -0.8951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749044600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:39 Heat of formation + Delta-G solvation = -11.187018 kcal Electronic energy + Delta-G solvation = -27265.553018 eV Core-core repulsion = 23469.119098 eV Total energy + Delta-G solvation = -3796.433920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80637 -39.58375 -38.56792 -37.53240 -35.33189 -32.99680 -32.49724 -31.21897 -30.68956 -30.49441 -29.30392 -27.36045 -25.50441 -24.10121 -22.90219 -22.34353 -21.78154 -20.85170 -19.79474 -18.40670 -17.60090 -17.12993 -16.41917 -16.07114 -16.05693 -15.78200 -15.56011 -15.00951 -14.41640 -14.38348 -14.28867 -14.12055 -13.67408 -13.31215 -13.17984 -13.09372 -12.79700 -12.57865 -12.39609 -12.29846 -11.94648 -11.77032 -11.29660 -11.18067 -11.08705 -10.76669 -10.56935 -10.27334 -10.17699 -10.03764 -9.88733 -9.46374 -9.31555 -8.67156 -8.63605 -8.60672 -8.46484 -8.31732 -6.11096 -4.10879 0.69012 1.21471 1.66249 1.69915 3.00274 3.02307 3.24232 3.33465 3.36493 3.49162 3.96109 4.08044 4.21084 4.37641 4.82305 4.93976 4.98153 5.15678 5.17773 5.21090 5.23656 5.27242 5.31405 5.39847 5.41973 5.46989 5.72614 5.80450 5.82274 5.86492 6.00199 6.07922 6.21712 6.25869 6.29600 6.40359 6.72348 6.75376 6.77265 6.91426 7.02990 7.12249 7.28447 7.30957 7.62002 7.64342 8.07965 8.43418 8.62671 8.94620 9.49377 11.01682 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007984 B = 0.005192 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.023849 B = 5391.384157 C = 7407.529513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.174 4.174 5 C -0.049 4.049 6 C -0.153 4.153 7 C 0.131 3.869 8 C 0.567 3.433 9 O -0.538 6.538 10 N -0.677 5.677 11 C 0.192 3.808 12 H 0.095 0.905 13 C -0.013 4.013 14 C -0.520 4.520 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.264 1.264 22 C -0.078 4.078 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.132 4.132 26 C -0.122 4.122 27 C -0.106 4.106 28 N -0.512 5.512 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.411 0.589 36 H 0.036 0.964 37 H 0.019 0.981 38 H 0.264 0.736 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.508 -4.486 -13.415 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.216 6.216 3 C 0.139 3.861 4 C -0.195 4.195 5 C -0.075 4.075 6 C -0.174 4.174 7 C -0.006 4.006 8 C 0.350 3.650 9 O -0.415 6.415 10 N -0.325 5.325 11 C 0.088 3.912 12 H 0.113 0.887 13 C -0.051 4.051 14 C -0.558 4.558 15 H 0.094 0.906 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.079 4.079 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.140 4.140 27 C -0.124 4.124 28 N -0.238 5.238 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.247 0.753 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.903 -4.066 -13.229 16.456 hybrid contribution -0.603 -0.453 -0.201 0.781 sum 8.300 -4.519 -13.430 16.422 Atomic orbital electron populations 1.22948 0.76631 1.03119 1.03247 1.86214 1.23376 1.24158 1.87853 1.19773 0.89355 0.84553 0.92456 1.21239 0.91990 0.99752 1.06500 1.21407 1.00723 0.90874 0.94466 1.21987 0.93157 1.00776 1.01487 1.20965 0.92270 0.90353 0.97007 1.17809 0.82748 0.87086 0.77316 1.90751 1.74043 1.25751 1.50965 1.45775 1.04767 1.10917 1.71025 1.20063 0.93402 0.87369 0.90399 0.88711 1.19877 0.90677 0.97377 0.97140 1.21001 0.96000 1.46321 0.92457 0.90635 1.24973 0.98859 0.94559 0.94656 1.69907 1.30697 1.46177 1.06775 0.86861 0.84624 0.78934 0.79400 1.20276 1.21310 1.18905 1.20545 0.97313 0.93620 0.96393 1.20946 0.99758 0.99509 0.92485 1.21049 1.01103 0.95666 0.96475 1.21019 1.01857 0.93436 0.98750 1.21062 1.00725 0.99237 0.93016 1.21043 0.99488 0.95244 0.96672 1.67204 1.40949 0.98221 1.17440 0.92137 0.88598 0.91388 0.83834 0.83517 0.83228 0.75315 0.94630 0.96264 0.92652 0.86499 0.86674 0.86739 0.86450 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.31 -4.06 10.48 -18.70 -0.20 -4.26 16 3 C 0.32 4.45 7.49 -17.14 -0.13 4.32 16 4 C -0.17 -1.94 10.05 -39.16 -0.39 -2.33 16 5 C -0.05 -0.51 10.16 -39.35 -0.40 -0.91 16 6 C -0.15 -2.05 9.63 -39.05 -0.38 -2.43 16 7 C 0.13 2.15 6.75 -83.02 -0.56 1.59 16 8 C 0.57 10.75 7.77 -12.19 -0.09 10.65 16 9 O -0.54 -11.29 15.98 5.36 0.09 -11.20 16 10 N -0.68 -12.88 4.01 -55.78 -0.22 -13.10 16 11 C 0.19 3.85 2.12 -69.08 -0.15 3.70 16 12 H 0.09 2.07 7.44 -51.93 -0.39 1.68 16 13 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 14 C -0.52 -14.03 9.39 -34.44 -0.32 -14.36 16 15 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 18 Si 0.87 20.88 27.47 -169.99 -4.67 16.22 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 22 C -0.08 -1.38 4.91 -104.62 -0.51 -1.90 16 23 C -0.11 -1.77 9.33 -39.58 -0.37 -2.13 16 24 C -0.12 -1.77 10.05 -39.59 -0.40 -2.16 16 25 C -0.13 -1.78 10.05 -39.59 -0.40 -2.18 16 26 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 27 C -0.11 -1.75 9.67 -39.58 -0.38 -2.13 16 28 N -0.51 -8.06 8.39 -9.88 -0.08 -8.14 16 29 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 33 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.15 1.91 7.63 -52.48 -0.40 1.51 16 35 H 0.41 7.58 7.93 -40.82 -0.32 7.26 16 36 H 0.04 0.82 7.20 -51.93 -0.37 0.44 16 37 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.12 1.81 7.71 -52.49 -0.40 1.40 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.12 1.92 8.04 -52.49 -0.42 1.49 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -32.40 372.28 -8.40 -40.80 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.67 Total: 9.59 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -4.03 Total: -9.43 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.47 Total: -47.32 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.11 Total: -15.46 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.40 -8.40 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749044600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.611 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds