Wall clock time and date at job start Tue Mar 31 2020 14:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35665 * 117.00242 * 2 1 4 4 C 1.39286 * 119.61736 * 179.72502 * 3 2 1 5 5 C 1.38331 * 119.30611 * 179.76982 * 4 3 2 6 6 C 1.38783 * 118.55663 * 0.49942 * 5 4 3 7 7 C 1.39123 * 119.18950 * 359.74881 * 6 5 4 8 8 C 1.48148 * 119.68938 * 180.02562 * 7 6 5 9 9 O 1.21512 * 120.00294 * 359.97000 * 8 7 6 10 10 N 1.34778 * 120.00023 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00094 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47112 * 324.99985 * 11 10 8 13 13 C 1.53003 * 109.47319 * 204.99462 * 11 10 8 14 14 C 1.50701 * 109.46731 * 65.00290 * 13 11 10 15 15 H 1.07999 * 120.00065 * 359.97438 * 14 13 11 16 16 C 1.37874 * 119.99984 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99941 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00150 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47252 * 89.99907 * 18 16 14 20 20 H 1.48497 * 109.47527 * 210.00154 * 18 16 14 21 21 H 1.48502 * 109.47219 * 330.00447 * 18 16 14 22 22 C 1.50701 * 109.46819 * 85.00054 * 11 10 8 23 23 C 1.38231 * 120.00319 * 39.72341 * 22 11 10 24 24 C 1.38238 * 119.99965 * 179.80917 * 23 22 11 25 25 C 1.38228 * 119.99987 * 0.39958 * 24 23 22 26 26 C 1.38229 * 120.00185 * 359.85801 * 25 24 23 27 27 C 1.38239 * 120.00217 * 359.95133 * 26 25 24 28 28 N 1.31892 * 119.61554 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46969 * 59.99619 * 1 2 3 30 30 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46864 * 300.00238 * 1 2 3 32 32 H 1.08008 * 120.34761 * 0.02779 * 4 3 2 33 33 H 1.08004 * 120.72013 * 180.24326 * 5 4 3 34 34 H 1.08004 * 120.40463 * 179.76661 * 6 5 4 35 35 H 0.97007 * 119.99874 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.47214 * 185.00200 * 13 11 10 37 37 H 1.08996 * 109.47111 * 305.00318 * 13 11 10 38 38 H 0.97003 * 120.00357 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.00050 * 0.02562 * 23 22 11 40 40 H 1.08000 * 119.99774 * 180.23100 * 24 23 22 41 41 H 1.08001 * 120.00038 * 179.83337 * 25 24 23 42 42 H 1.08005 * 120.00389 * 179.97438 * 26 25 24 43 43 H 1.07992 * 120.00348 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4364 1.2723 0.0058 5 6 4.0578 2.5082 0.0009 6 6 3.2667 3.6485 0.0010 7 6 1.8820 3.5137 0.0006 8 6 1.0270 4.7235 0.0000 9 8 1.5356 5.8270 0.0005 10 7 -0.3151 4.6001 -0.0009 11 6 -1.1607 5.7965 -0.0009 12 1 -0.6833 6.5788 0.5893 13 6 -2.5231 5.4581 0.6076 14 6 -2.3482 5.0935 2.0593 15 1 -1.3638 5.1019 2.5034 16 6 -3.4449 4.7483 2.8204 17 7 -3.2922 4.4296 4.0871 18 14 -5.1475 4.7331 2.0522 19 1 -5.4250 3.3870 1.4900 20 1 -6.1611 5.0553 3.0885 21 1 -5.2100 5.7451 0.9671 22 6 -1.3485 6.2788 -1.4162 23 6 -1.5340 5.3669 -2.4383 24 6 -1.7102 5.8095 -3.7360 25 6 -1.6928 7.1637 -4.0127 26 6 -1.5021 8.0754 -2.9914 27 6 -1.3297 7.6330 -1.6931 28 7 1.3193 2.3101 0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.0241 0.3661 0.0098 33 1 5.1352 2.5841 0.0013 34 1 3.7205 4.6286 0.0010 35 1 -0.7212 3.7192 -0.0016 36 1 -3.1819 6.3227 0.5269 37 1 -2.9613 4.6162 0.0718 38 1 -4.0637 4.1871 4.6227 39 1 -1.5446 4.3087 -2.2226 40 1 -1.8588 5.0971 -4.5340 41 1 -1.8278 7.5094 -5.0269 42 1 -1.4880 9.1335 -3.2076 43 1 -1.1811 8.3453 -0.8951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749044600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:38 Heat of formation + Delta-G solvation = -32.855193 kcal Electronic energy + Delta-G solvation = -27266.492621 eV Core-core repulsion = 23469.119098 eV Total energy + Delta-G solvation = -3797.373523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93739 -40.89953 -39.79442 -38.63238 -36.91104 -34.77568 -33.87432 -32.55691 -31.80359 -31.65479 -31.00559 -28.37050 -27.07214 -25.38864 -23.91424 -23.63594 -23.29679 -22.21481 -21.26309 -19.60211 -19.08067 -18.78467 -17.77544 -17.14468 -17.05499 -16.97499 -16.92665 -16.38863 -16.21921 -15.69517 -15.58091 -15.18126 -15.04080 -14.65444 -14.41693 -14.27466 -14.20807 -14.06385 -13.94184 -13.61805 -13.22149 -13.05759 -12.71049 -12.51851 -12.40230 -12.19445 -11.99819 -11.83398 -11.76639 -11.55911 -11.47717 -11.01932 -10.80305 -10.67680 -10.12023 -9.78691 -9.63191 -9.56789 -8.30107 -6.35260 -0.41032 0.23412 0.46267 0.53069 1.34053 1.37101 1.48242 1.70026 2.03434 2.14631 2.33731 2.78793 2.89792 3.00929 3.07447 3.80992 3.89964 3.93846 3.99304 4.02090 4.17993 4.24427 4.29310 4.33269 4.41740 4.44657 4.49019 4.53064 4.69706 4.73240 4.78695 4.93252 4.98573 5.08651 5.10961 5.14829 5.20469 5.34090 5.46902 5.52903 5.62055 5.62437 5.80797 6.10054 6.14974 6.22589 6.41439 6.68779 6.72147 7.13932 7.28504 8.86416 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007984 B = 0.005192 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.023849 B = 5391.384157 C = 7407.529513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.298 3.702 4 C -0.156 4.156 5 C -0.033 4.033 6 C -0.152 4.152 7 C 0.096 3.904 8 C 0.561 3.439 9 O -0.569 6.569 10 N -0.677 5.677 11 C 0.201 3.799 12 H 0.062 0.938 13 C -0.003 4.003 14 C -0.521 4.521 15 H 0.028 0.972 16 C 0.012 3.988 17 N -0.947 5.947 18 Si 0.946 3.054 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.248 1.248 22 C -0.101 4.101 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.127 4.127 28 N -0.533 5.533 29 H 0.058 0.942 30 H 0.127 0.873 31 H 0.043 0.957 32 H 0.181 0.819 33 H 0.196 0.804 34 H 0.152 0.848 35 H 0.411 0.589 36 H 0.036 0.964 37 H 0.031 0.969 38 H 0.266 0.734 39 H 0.116 0.884 40 H 0.145 0.855 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.872 -5.435 -16.656 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.116 3.884 4 C -0.177 4.177 5 C -0.058 4.058 6 C -0.174 4.174 7 C -0.039 4.039 8 C 0.347 3.653 9 O -0.449 6.449 10 N -0.325 5.325 11 C 0.096 3.904 12 H 0.081 0.919 13 C -0.040 4.040 14 C -0.559 4.559 15 H 0.046 0.954 16 C -0.185 4.185 17 N -0.587 5.587 18 Si 0.769 3.231 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.172 1.172 22 C -0.102 4.102 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.139 4.139 27 C -0.146 4.146 28 N -0.260 5.260 29 H 0.077 0.923 30 H 0.145 0.855 31 H 0.062 0.938 32 H 0.198 0.802 33 H 0.213 0.787 34 H 0.170 0.830 35 H 0.247 0.753 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.134 0.866 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.164 0.836 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.272 -5.014 -16.487 19.568 hybrid contribution -0.572 -0.189 0.816 1.014 sum 8.700 -5.203 -15.671 18.664 Atomic orbital electron populations 1.23032 0.76210 1.04745 1.01968 1.86218 1.23838 1.23772 1.87946 1.20251 0.90689 0.84198 0.93225 1.21745 0.90865 1.01495 1.03580 1.21915 1.02662 0.89131 0.92063 1.22194 0.92157 1.02325 1.00677 1.20653 0.92991 0.89529 1.00757 1.18313 0.82728 0.87957 0.76290 1.90703 1.74468 1.27209 1.52546 1.45744 1.05121 1.10497 1.71148 1.19707 0.91752 0.86924 0.92002 0.91948 1.19718 0.92456 0.97483 0.94388 1.21162 0.94033 1.45853 0.94811 0.95374 1.25901 1.03548 0.94089 0.94986 1.70069 1.32146 1.47885 1.08619 0.85723 0.78619 0.79950 0.78775 1.18731 1.21168 1.17196 1.20337 1.00067 0.94723 0.95093 1.21052 1.00412 0.99251 0.93297 1.21415 0.99764 0.96919 0.96038 1.21488 0.99630 0.92877 1.00248 1.21408 0.99421 1.01101 0.91924 1.21191 1.00587 0.94675 0.98136 1.67019 1.42132 0.98589 1.18300 0.92286 0.85497 0.93812 0.80209 0.78686 0.83047 0.75299 0.94604 0.95043 0.92495 0.86603 0.83699 0.82989 0.83577 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.38 113.37 1.18 2.00 16 2 O -0.31 -7.90 10.48 -89.81 -0.94 -8.84 16 3 C 0.30 8.09 7.49 84.94 0.64 8.73 16 4 C -0.16 -3.03 10.05 22.54 0.23 -2.80 16 5 C -0.03 -0.58 10.16 22.42 0.23 -0.36 16 6 C -0.15 -4.02 9.63 22.61 0.22 -3.80 16 7 C 0.10 3.28 6.75 41.83 0.28 3.56 16 8 C 0.56 22.88 7.77 86.88 0.67 23.56 16 9 O -0.57 -25.69 15.98 -3.75 -0.06 -25.75 16 10 N -0.68 -27.81 4.01 -448.69 -1.80 -29.61 16 11 C 0.20 8.61 2.12 44.25 0.09 8.71 16 12 H 0.06 3.01 7.44 -2.39 -0.02 3.00 16 13 C 0.00 -0.13 3.56 29.85 0.11 -0.03 16 14 C -0.52 -29.77 9.39 25.60 0.24 -29.53 16 15 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 16 C 0.01 0.70 5.47 84.65 0.46 1.16 16 17 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 18 Si 0.95 43.59 27.47 68.60 1.88 45.47 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 22 C -0.10 -3.71 4.91 -19.87 -0.10 -3.81 16 23 C -0.12 -3.91 9.33 22.27 0.21 -3.70 16 24 C -0.12 -3.17 10.05 22.27 0.22 -2.95 16 25 C -0.12 -2.91 10.05 22.27 0.22 -2.68 16 26 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 27 C -0.13 -4.24 9.67 22.27 0.22 -4.02 16 28 N -0.53 -17.36 8.39 -298.22 -2.50 -19.86 16 29 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 30 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 32 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.20 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.15 3.88 7.63 -2.91 -0.02 3.86 16 35 H 0.41 16.42 7.93 -92.70 -0.74 15.68 16 36 H 0.04 1.67 7.20 -2.39 -0.02 1.66 16 37 H 0.03 1.39 7.57 -2.39 -0.02 1.38 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.12 3.62 7.71 -2.91 -0.02 3.60 16 40 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 42 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.12 3.86 8.04 -2.91 -0.02 3.84 16 Total: -1.00 -76.03 372.28 2.46 -73.57 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.24 Total: 32.78 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.34 Total: -8.90 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -4.00 Total: -108.32 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.00 Total: -34.59 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -76.03 2.46 -73.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749044600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.711 kcal (2) G-P(sol) polarization free energy of solvation -76.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds