Wall clock time and date at job start Tue Mar 31 2020 14:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47063 * 334.22642 * 3 2 1 5 5 N 1.46897 * 109.46937 * 174.85622 * 4 3 2 6 6 C 1.46900 * 111.00045 * 199.81072 * 5 4 3 7 7 C 1.50700 * 109.46958 * 66.04708 * 6 5 4 8 8 H 1.08002 * 119.99925 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00115 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99858 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99928 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47220 * 90.00232 * 11 9 7 13 13 H 1.48499 * 109.47007 * 209.99932 * 11 9 7 14 14 H 1.48501 * 109.47227 * 329.99981 * 11 9 7 15 15 C 1.46905 * 110.99942 * 75.85941 * 5 4 3 16 16 N 1.46504 * 109.47178 * 209.02111 * 15 5 4 17 17 C 1.35426 * 119.45183 * 264.65744 * 16 15 5 18 18 C 1.35928 * 121.37914 * 180.02562 * 17 16 15 19 19 C 1.39524 * 119.82178 * 359.97337 * 18 17 16 20 20 C 1.39257 * 119.14780 * 359.73559 * 19 18 17 21 21 C 1.43199 * 120.56565 * 180.25334 * 20 19 18 22 22 N 7.86199 * 149.01883 * 151.62187 * 2 1 3 23 23 C 1.34655 * 119.44693 * 84.67350 * 16 15 5 24 24 O 1.21899 * 120.16325 * 359.94274 * 23 16 15 25 25 C 1.51157 * 109.72166 * 179.97438 * 19 18 17 26 26 C 1.54364 * 105.18961 * 342.82545 * 25 19 18 27 27 C 1.51354 * 130.73547 * 179.97438 * 18 17 16 28 28 H 1.08998 * 109.47140 * 214.22329 * 3 2 1 29 29 H 1.09001 * 109.46754 * 94.22666 * 3 2 1 30 30 H 1.08999 * 109.47326 * 54.85573 * 4 3 2 31 31 H 1.09000 * 109.46930 * 294.85508 * 4 3 2 32 32 H 1.08997 * 109.47212 * 186.04363 * 6 5 4 33 33 H 1.09000 * 109.47166 * 306.04900 * 6 5 4 34 34 H 0.96998 * 120.00258 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46847 * 89.02383 * 15 5 4 36 36 H 1.08998 * 109.47263 * 329.02480 * 15 5 4 37 37 H 1.08001 * 119.30688 * 0.02631 * 17 16 15 38 38 H 1.09008 * 110.30026 * 223.89745 * 25 19 18 39 39 H 1.08999 * 110.38227 * 101.79656 * 25 19 18 40 40 H 1.08998 * 110.78504 * 268.16886 * 26 25 19 41 41 H 1.08997 * 110.94647 * 144.79921 * 26 25 19 42 42 H 1.08996 * 110.28750 * 316.17304 * 27 18 17 43 43 H 1.08999 * 110.28465 * 78.19043 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2981 0.6272 5 7 4.5823 -1.3531 0.5162 6 6 5.0699 -2.7312 0.6611 7 6 4.5907 -3.5586 -0.5037 8 1 3.9849 -3.1059 -1.2748 9 6 4.9265 -4.8934 -0.5857 10 7 5.6654 -5.4444 0.3524 11 14 4.3330 -5.9188 -2.0299 12 1 5.3330 -5.8556 -3.1260 13 1 4.1605 -7.3291 -1.5980 14 1 3.0338 -5.3869 -2.5140 15 6 5.2185 -0.4638 1.4973 16 7 6.5034 0.0039 0.9714 17 6 7.6400 -0.6484 1.3132 18 6 8.8529 -0.2480 0.8485 19 6 8.9410 0.8566 0.0007 20 6 7.7762 1.5291 -0.3604 21 6 7.8309 2.6631 -1.2331 22 7 7.8763 3.5607 -1.9235 23 6 6.5347 1.0755 0.1566 24 8 5.5012 1.6494 -0.1405 25 6 10.3854 1.0983 -0.3739 26 6 11.2102 0.3116 0.6671 27 6 10.2375 -0.8099 1.0894 28 1 2.9710 0.8505 0.5780 29 1 2.9713 0.0766 -1.0249 30 1 2.6824 -2.1497 0.1052 31 1 2.8325 -1.3309 1.6785 32 1 6.1597 -2.7307 0.6824 33 1 4.6885 -3.1559 1.5897 34 1 5.9013 -6.3835 0.2950 35 1 5.3829 -1.0076 2.4276 36 1 4.5701 0.3918 1.6862 37 1 7.5812 -1.5048 1.9687 38 1 10.6183 2.1616 -0.3156 39 1 10.5854 0.7223 -1.3772 40 1 11.4639 0.9441 1.5177 41 1 12.1101 -0.1064 0.2160 42 1 10.3705 -1.0478 2.1447 43 1 10.3960 -1.6990 0.4792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766612460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:57 Heat of formation + Delta-G solvation = 59.514294 kcal Electronic energy + Delta-G solvation = -27280.414468 eV Core-core repulsion = 23519.339139 eV Total energy + Delta-G solvation = -3761.075330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54479 -38.57025 -37.59353 -36.62348 -36.05865 -35.45981 -32.90832 -32.35194 -30.97210 -30.29135 -27.51699 -27.21568 -25.28379 -24.71293 -23.26355 -21.87193 -21.11163 -20.40349 -18.62938 -17.83966 -17.19171 -16.81620 -16.53120 -16.19661 -15.57109 -15.43456 -14.81194 -14.63352 -14.43818 -14.33728 -13.76290 -13.49962 -13.26300 -13.15875 -12.98286 -12.84668 -12.61214 -12.40182 -12.34487 -12.21741 -12.15885 -12.03649 -11.91878 -11.67123 -11.52215 -11.39648 -11.14102 -11.09165 -10.83485 -10.75470 -10.43784 -10.11185 -9.89339 -9.60893 -9.45157 -8.64883 -7.87936 -7.76503 -6.24346 -4.25868 0.42711 1.84893 2.44397 2.96321 3.01166 3.04560 3.07469 3.22061 3.29243 3.33157 3.88773 4.01573 4.13090 4.19189 4.30279 4.36365 4.68213 4.72990 4.79548 4.88402 4.90354 5.08166 5.13801 5.29730 5.36516 5.37720 5.48106 5.52440 5.53681 5.59757 5.64124 5.83805 5.85860 5.96045 6.00908 6.11083 6.15770 6.39134 6.42905 6.81729 6.90445 7.07648 7.46825 7.64238 7.75880 7.81287 7.84721 8.10614 8.18001 8.80688 9.40226 10.86107 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008762 B = 0.004708 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.825138 B = 5945.333300 C = 8031.115414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.220 3.780 3 C -0.028 4.028 4 C 0.076 3.924 5 N -0.543 5.543 6 C 0.192 3.808 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.062 3.938 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.251 3.749 16 N -0.472 5.472 17 C 0.206 3.794 18 C -0.232 4.232 19 C 0.082 3.918 20 C -0.179 4.179 21 C 0.291 3.709 22 N -0.438 5.438 23 C 0.553 3.447 24 O -0.529 6.529 25 C -0.100 4.100 26 C -0.117 4.117 27 C -0.057 4.057 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.000 1.000 34 H 0.263 0.737 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.168 0.832 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.965 7.526 6.997 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.098 4.098 3 C -0.068 4.068 4 C -0.054 4.054 5 N -0.268 5.268 6 C 0.068 3.932 7 C -0.552 4.552 8 H 0.084 0.916 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.197 1.197 15 C 0.040 3.960 16 N -0.179 5.179 17 C 0.073 3.927 18 C -0.237 4.237 19 C 0.074 3.926 20 C -0.187 4.187 21 C -0.023 4.023 22 N -0.115 5.115 23 C 0.351 3.649 24 O -0.409 6.409 25 C -0.137 4.137 26 C -0.155 4.155 27 C -0.095 4.095 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.121 0.879 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.018 0.982 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.186 0.814 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.743 9.269 5.340 14.469 hybrid contribution -0.009 -1.503 0.158 1.511 sum 9.733 7.766 5.498 13.612 Atomic orbital electron populations 1.81158 1.13232 1.09300 1.09736 1.29361 0.95398 0.92545 0.92469 1.19426 0.80354 1.00888 1.06155 1.21821 0.87646 0.96985 0.98938 1.61589 1.04912 1.12137 1.48202 1.19900 0.95909 0.80462 0.96957 1.21076 1.32959 0.93652 1.07508 0.91579 1.24920 0.95012 0.97807 0.96321 1.69909 1.37154 1.13006 1.33395 0.86518 0.79380 0.79288 0.82439 1.20522 1.21235 1.19747 1.22492 0.83382 0.97981 0.92190 1.45551 1.08275 1.24753 1.39336 1.21544 0.84709 0.93209 0.93189 1.19660 0.95189 1.01685 1.07201 1.21173 0.94211 0.89741 0.87489 1.16310 0.93012 0.99789 1.09620 1.24644 0.93223 0.92068 0.92413 1.81047 1.07701 1.11602 1.11144 1.16266 0.89079 0.80237 0.79297 1.90906 1.34319 1.56949 1.58737 1.21316 0.89328 1.02059 1.00973 1.22289 0.97844 0.96931 0.98409 1.20745 0.88182 0.98218 1.02372 0.87662 0.86422 0.87885 0.94419 0.94875 0.98212 0.92711 0.90753 0.87761 0.81434 0.89653 0.88332 0.90658 0.90050 0.90419 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.99 18.54 42.15 0.78 -7.21 16 2 C 0.22 3.34 15.43 -20.76 -0.32 3.02 16 3 C -0.03 -0.37 5.75 -29.52 -0.17 -0.54 16 4 C 0.08 1.15 4.69 -3.83 -0.02 1.13 16 5 N -0.54 -9.00 4.52 -239.98 -1.09 -10.08 16 6 C 0.19 3.93 4.55 -4.98 -0.02 3.91 16 7 C -0.51 -12.45 8.23 -34.44 -0.28 -12.73 16 8 H 0.07 1.63 7.31 -52.49 -0.38 1.25 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -23.37 13.29 55.43 0.74 -22.64 16 11 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.25 3.24 4.92 -63.30 -0.31 2.93 16 16 N -0.47 -6.19 2.82 -122.56 -0.35 -6.54 16 17 C 0.21 2.25 9.22 -16.79 -0.15 2.09 16 18 C -0.23 -2.31 6.09 -104.65 -0.64 -2.94 16 19 C 0.08 0.89 6.07 -103.54 -0.63 0.27 16 20 C -0.18 -2.52 5.79 -106.18 -0.62 -3.13 16 21 C 0.29 4.60 14.71 -22.56 -0.33 4.27 16 22 N -0.44 -7.58 18.52 41.73 0.77 -6.80 16 23 C 0.55 8.47 7.43 -14.90 -0.11 8.36 16 24 O -0.53 -9.46 16.19 5.01 0.08 -9.38 16 25 C -0.10 -0.80 6.48 -26.94 -0.17 -0.97 16 26 C -0.12 -0.70 7.06 -25.32 -0.18 -0.88 16 27 C -0.06 -0.41 6.76 -26.86 -0.18 -0.59 16 28 H 0.11 1.30 6.94 -51.93 -0.36 0.94 16 29 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.10 1.81 6.57 -51.93 -0.34 1.47 16 31 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 32 H 0.03 0.70 6.76 -51.93 -0.35 0.35 16 33 H 0.00 0.00 8.12 -51.93 -0.42 -0.42 16 34 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 35 H 0.07 0.81 7.62 -51.93 -0.40 0.41 16 36 H 0.10 1.24 5.93 -51.93 -0.31 0.93 16 37 H 0.17 1.52 7.71 -52.49 -0.40 1.11 16 38 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -31.39 373.67 -8.16 -39.55 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.48 Total: -3.22 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -4.24 Total: 5.63 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.86 Total: -53.27 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.39 -8.16 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766612460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.063 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds