Wall clock time and date at job start Tue Mar 31 2020 14:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47063 * 334.22642 * 3 2 1 5 5 N 1.46897 * 109.46937 * 174.85622 * 4 3 2 6 6 C 1.46900 * 111.00045 * 199.81072 * 5 4 3 7 7 C 1.50700 * 109.46958 * 66.04708 * 6 5 4 8 8 H 1.08002 * 119.99925 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00115 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99858 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99928 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47220 * 90.00232 * 11 9 7 13 13 H 1.48499 * 109.47007 * 209.99932 * 11 9 7 14 14 H 1.48501 * 109.47227 * 329.99981 * 11 9 7 15 15 C 1.46905 * 110.99942 * 75.85941 * 5 4 3 16 16 N 1.46504 * 109.47178 * 209.02111 * 15 5 4 17 17 C 1.35426 * 119.45183 * 264.65744 * 16 15 5 18 18 C 1.35928 * 121.37914 * 180.02562 * 17 16 15 19 19 C 1.39524 * 119.82178 * 359.97337 * 18 17 16 20 20 C 1.39257 * 119.14780 * 359.73559 * 19 18 17 21 21 C 1.43199 * 120.56565 * 180.25334 * 20 19 18 22 22 N 7.86199 * 149.01883 * 151.62187 * 2 1 3 23 23 C 1.34655 * 119.44693 * 84.67350 * 16 15 5 24 24 O 1.21899 * 120.16325 * 359.94274 * 23 16 15 25 25 C 1.51157 * 109.72166 * 179.97438 * 19 18 17 26 26 C 1.54364 * 105.18961 * 342.82545 * 25 19 18 27 27 C 1.51354 * 130.73547 * 179.97438 * 18 17 16 28 28 H 1.08998 * 109.47140 * 214.22329 * 3 2 1 29 29 H 1.09001 * 109.46754 * 94.22666 * 3 2 1 30 30 H 1.08999 * 109.47326 * 54.85573 * 4 3 2 31 31 H 1.09000 * 109.46930 * 294.85508 * 4 3 2 32 32 H 1.08997 * 109.47212 * 186.04363 * 6 5 4 33 33 H 1.09000 * 109.47166 * 306.04900 * 6 5 4 34 34 H 0.96998 * 120.00258 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46847 * 89.02383 * 15 5 4 36 36 H 1.08998 * 109.47263 * 329.02480 * 15 5 4 37 37 H 1.08001 * 119.30688 * 0.02631 * 17 16 15 38 38 H 1.09008 * 110.30026 * 223.89745 * 25 19 18 39 39 H 1.08999 * 110.38227 * 101.79656 * 25 19 18 40 40 H 1.08998 * 110.78504 * 268.16886 * 26 25 19 41 41 H 1.08997 * 110.94647 * 144.79921 * 26 25 19 42 42 H 1.08996 * 110.28750 * 316.17304 * 27 18 17 43 43 H 1.08999 * 110.28465 * 78.19043 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2981 0.6272 5 7 4.5823 -1.3531 0.5162 6 6 5.0699 -2.7312 0.6611 7 6 4.5907 -3.5586 -0.5037 8 1 3.9849 -3.1059 -1.2748 9 6 4.9265 -4.8934 -0.5857 10 7 5.6654 -5.4444 0.3524 11 14 4.3330 -5.9188 -2.0299 12 1 5.3330 -5.8556 -3.1260 13 1 4.1605 -7.3291 -1.5980 14 1 3.0338 -5.3869 -2.5140 15 6 5.2185 -0.4638 1.4973 16 7 6.5034 0.0039 0.9714 17 6 7.6400 -0.6484 1.3132 18 6 8.8529 -0.2480 0.8485 19 6 8.9410 0.8566 0.0007 20 6 7.7762 1.5291 -0.3604 21 6 7.8309 2.6631 -1.2331 22 7 7.8763 3.5607 -1.9235 23 6 6.5347 1.0755 0.1566 24 8 5.5012 1.6494 -0.1405 25 6 10.3854 1.0983 -0.3739 26 6 11.2102 0.3116 0.6671 27 6 10.2375 -0.8099 1.0894 28 1 2.9710 0.8505 0.5780 29 1 2.9713 0.0766 -1.0249 30 1 2.6824 -2.1497 0.1052 31 1 2.8325 -1.3309 1.6785 32 1 6.1597 -2.7307 0.6824 33 1 4.6885 -3.1559 1.5897 34 1 5.9013 -6.3835 0.2950 35 1 5.3829 -1.0076 2.4276 36 1 4.5701 0.3918 1.6862 37 1 7.5812 -1.5048 1.9687 38 1 10.6183 2.1616 -0.3156 39 1 10.5854 0.7223 -1.3772 40 1 11.4639 0.9441 1.5177 41 1 12.1101 -0.1064 0.2160 42 1 10.3705 -1.0478 2.1447 43 1 10.3960 -1.6990 0.4792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766612460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:56 Heat of formation + Delta-G solvation = 41.805228 kcal Electronic energy + Delta-G solvation = -27281.182391 eV Core-core repulsion = 23519.339139 eV Total energy + Delta-G solvation = -3761.843253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.54115 -39.50626 -38.80124 -37.83901 -37.34495 -36.56313 -34.69985 -33.30610 -32.17684 -31.29415 -28.98289 -28.01305 -26.49300 -25.68519 -24.79463 -22.93556 -21.83998 -21.63652 -19.65228 -18.82250 -18.51521 -18.31976 -17.69147 -17.23362 -16.73238 -16.49381 -16.23819 -15.76794 -15.58004 -15.32275 -15.15452 -14.73610 -14.41712 -14.32526 -14.10911 -14.03433 -13.87380 -13.63980 -13.48396 -13.45633 -13.24984 -13.09194 -12.98798 -12.75557 -12.66216 -12.58413 -12.41315 -12.26476 -11.95655 -11.94209 -11.82837 -11.56309 -11.26301 -10.99501 -10.54608 -10.45861 -9.16381 -8.82821 -8.15719 -6.19864 -0.52650 0.89477 1.37842 1.42559 1.46767 1.53666 1.72414 1.79155 1.84085 1.95512 2.43658 2.77496 2.93142 3.05185 3.20098 3.33690 3.54671 3.61566 3.81089 3.98017 4.08485 4.18717 4.21898 4.28524 4.31503 4.34172 4.65044 4.69557 4.71582 4.92500 4.93787 4.96021 5.02221 5.09000 5.19254 5.29069 5.32134 5.33918 5.36478 5.51131 5.59001 5.71072 6.01254 6.08679 6.26942 6.52351 6.57682 6.59532 6.93180 7.01326 7.48358 8.93728 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008762 B = 0.004708 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.825138 B = 5945.333300 C = 8031.115414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.243 3.757 3 C -0.011 4.011 4 C 0.079 3.921 5 N -0.555 5.555 6 C 0.208 3.792 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 N -0.919 5.919 11 Si 0.942 3.058 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.249 3.751 16 N -0.473 5.473 17 C 0.201 3.799 18 C -0.225 4.225 19 C 0.097 3.903 20 C -0.214 4.214 21 C 0.304 3.696 22 N -0.478 5.478 23 C 0.545 3.455 24 O -0.568 6.568 25 C -0.105 4.105 26 C -0.108 4.108 27 C -0.058 4.058 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.030 0.970 33 H -0.012 1.012 34 H 0.263 0.737 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.190 0.810 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.933 7.107 8.252 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.074 4.074 3 C -0.052 4.052 4 C -0.050 4.050 5 N -0.281 5.281 6 C 0.083 3.917 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.179 4.179 10 N -0.559 5.559 11 Si 0.769 3.231 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.039 3.961 16 N -0.179 5.179 17 C 0.069 3.931 18 C -0.230 4.230 19 C 0.089 3.911 20 C -0.223 4.223 21 C -0.009 4.009 22 N -0.156 5.156 23 C 0.345 3.655 24 O -0.451 6.451 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.095 4.095 28 H 0.143 0.857 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.006 0.994 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.207 0.793 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.733 8.844 6.605 16.109 hybrid contribution -0.536 -1.404 -0.188 1.515 sum 11.196 7.440 6.417 14.896 Atomic orbital electron populations 1.81179 1.14393 1.10666 1.11070 1.29509 0.95398 0.91284 0.91246 1.19327 0.79114 1.00807 1.05904 1.21727 0.86891 0.96457 0.99960 1.61392 1.05758 1.10527 1.50378 1.19539 0.95365 0.82066 0.94743 1.21409 1.32115 0.94183 1.08216 0.92758 1.25470 0.95510 0.98877 0.98029 1.69964 1.38298 1.13157 1.34513 0.85804 0.78693 0.78197 0.80420 1.20502 1.21058 1.20091 1.22667 0.83510 0.97856 0.92113 1.45484 1.09030 1.24378 1.39048 1.22026 0.84372 0.93425 0.93265 1.20140 0.96314 1.00816 1.05738 1.21582 0.94844 0.88765 0.85907 1.16332 0.93899 1.00666 1.11363 1.24989 0.92173 0.91917 0.91868 1.81033 1.08905 1.12939 1.12751 1.16463 0.89026 0.80555 0.79419 1.90866 1.35432 1.58347 1.60441 1.21512 0.87563 1.03011 1.02082 1.22326 0.97761 0.96239 0.98165 1.20888 0.86252 0.98469 1.03910 0.85725 0.87187 0.90704 0.92237 0.95246 0.99447 0.92768 0.87904 0.86534 0.79270 0.89090 0.87693 0.89311 0.88104 0.88225 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.19 18.54 20.01 0.37 -16.82 16 2 C 0.24 7.22 15.43 89.44 1.38 8.60 16 3 C -0.01 -0.29 5.75 28.79 0.17 -0.13 16 4 C 0.08 2.33 4.69 86.30 0.40 2.73 16 5 N -0.56 -17.80 4.52 -913.15 -4.13 -21.93 16 6 C 0.21 8.35 4.55 85.56 0.39 8.74 16 7 C -0.52 -25.16 8.23 25.60 0.21 -24.95 16 8 H 0.05 2.70 7.31 -2.91 -0.02 2.68 16 9 C 0.02 1.03 5.46 84.66 0.46 1.50 16 10 N -0.92 -47.45 13.29 21.45 0.28 -47.16 16 11 Si 0.94 41.04 29.54 68.60 2.03 43.07 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 14 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 15 C 0.25 5.96 4.92 170.80 0.84 6.80 16 16 N -0.47 -11.67 2.82 -659.88 -1.86 -13.53 16 17 C 0.20 3.88 9.22 83.60 0.77 4.65 16 18 C -0.23 -3.85 6.09 -19.88 -0.12 -3.98 16 19 C 0.10 1.95 6.07 -19.16 -0.12 1.83 16 20 C -0.21 -5.93 5.79 -20.87 -0.12 -6.06 16 21 C 0.30 9.73 14.71 88.36 1.30 11.03 16 22 N -0.48 -16.92 18.52 18.97 0.35 -16.57 16 23 C 0.54 16.46 7.43 85.17 0.63 17.10 16 24 O -0.57 -20.38 16.19 -4.99 -0.08 -20.46 16 25 C -0.11 -1.41 6.48 30.46 0.20 -1.21 16 26 C -0.11 -0.85 7.06 31.51 0.22 -0.63 16 27 C -0.06 -0.60 6.76 30.51 0.21 -0.40 16 28 H 0.12 2.88 6.94 -2.39 -0.02 2.86 16 29 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.07 2.64 6.57 -2.39 -0.02 2.63 16 31 H 0.06 1.49 8.00 -2.39 -0.02 1.47 16 32 H 0.03 1.21 6.76 -2.39 -0.02 1.19 16 33 H -0.01 -0.52 8.12 -2.39 -0.02 -0.54 16 34 H 0.26 13.08 8.31 -92.71 -0.77 12.31 16 35 H 0.10 1.92 7.62 -2.38 -0.02 1.90 16 36 H 0.12 2.53 5.93 -2.39 -0.01 2.51 16 37 H 0.19 2.81 7.71 -2.91 -0.02 2.79 16 38 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -68.88 373.67 4.84 -64.04 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 1.05 Total: 3.73 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 6.83 Total: 25.64 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -4.98 Total: -116.01 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.08 Total: -20.46 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -68.88 4.84 -64.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766612460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.840 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds