Wall clock time and date at job start Tue Mar 31 2020 14:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35985 * 117.00015 * 2 1 4 4 C 1.39243 * 120.39675 * 179.97438 * 3 2 1 5 5 C 1.38335 * 118.44514 * 180.02562 * 4 3 2 6 6 C 1.39012 * 119.16216 * 359.97438 * 5 4 3 7 7 N 1.39585 * 119.63578 * 179.97438 * 6 5 4 8 8 C 1.46504 * 119.99985 * 94.76471 * 7 6 5 9 9 C 1.34773 * 120.00137 * 274.76113 * 7 6 5 10 10 O 1.21281 * 120.00046 * 354.95644 * 9 7 6 11 11 C 1.50706 * 119.99775 * 174.95558 * 9 7 6 12 12 C 1.50704 * 109.46710 * 180.02562 * 11 9 7 13 13 C 1.37637 * 120.12757 * 264.99681 * 12 11 9 14 14 C 1.38609 * 120.25043 * 180.29931 * 13 12 11 15 15 C 1.38661 * 120.50028 * 359.44884 * 14 13 12 16 16 C 1.37597 * 120.24445 * 0.55450 * 15 14 13 17 17 C 1.40698 * 120.12685 * 85.02347 * 12 11 9 18 18 C 1.41394 * 120.24637 * 359.95559 * 17 12 11 19 19 H 1.08001 * 119.99519 * 330.33598 * 18 17 12 20 20 C 1.39943 * 120.00225 * 150.33189 * 18 17 12 21 21 N 1.30825 * 119.99892 * 350.02774 * 20 18 17 22 22 Si 1.86799 * 120.00111 * 170.03343 * 20 18 17 23 23 H 1.48496 * 109.47018 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47162 * 119.99885 * 22 20 18 25 25 H 1.48499 * 109.46893 * 240.00020 * 22 20 18 26 26 N 1.32303 * 120.72328 * 0.25761 * 6 5 4 27 27 C 1.31942 * 121.69316 * 359.47563 * 26 6 5 28 28 H 1.09002 * 109.47230 * 60.00004 * 1 2 3 29 29 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47347 * 300.00327 * 1 2 3 31 31 H 1.07999 * 120.77393 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.41695 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47003 * 270.00081 * 8 7 6 34 34 H 1.09002 * 109.47006 * 29.99730 * 8 7 6 35 35 H 1.08996 * 109.47326 * 149.99703 * 8 7 6 36 36 H 1.09001 * 109.47110 * 60.00295 * 11 9 7 37 37 H 1.08998 * 109.47479 * 299.99770 * 11 9 7 38 38 H 1.08006 * 119.87691 * 0.02884 * 13 12 11 39 39 H 1.08002 * 119.75356 * 179.70382 * 14 13 12 40 40 H 1.07997 * 119.87771 * 180.30023 * 15 14 13 41 41 H 1.08003 * 120.12878 * 179.74617 * 16 15 14 42 42 H 0.97001 * 120.00117 * 179.97438 * 21 20 18 43 43 H 1.08002 * 119.61151 * 180.28838 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4364 1.2941 0.0005 5 6 4.0221 2.5474 0.0011 6 6 3.2091 3.6750 0.0005 7 7 3.7896 4.9444 0.0016 8 6 3.9999 5.6548 -1.2624 9 6 4.1566 5.5166 1.1653 10 8 3.9002 4.9701 2.2172 11 6 4.8858 6.8355 1.1594 12 6 5.1793 7.2535 2.5773 13 6 4.3229 8.1047 3.2379 14 6 4.5937 8.4957 4.5399 15 6 5.7217 8.0263 5.1955 16 6 6.5918 7.1745 4.5545 17 6 6.3300 6.7754 3.2306 18 6 7.2168 5.9002 2.5621 19 1 6.8430 5.2290 1.8030 20 6 8.5787 5.9036 2.8840 21 7 9.0662 6.8414 3.6550 22 14 9.7005 4.5694 2.2126 23 1 8.9098 3.6342 1.3728 24 1 10.7705 5.1896 1.3906 25 1 10.3129 3.8235 3.3412 26 7 1.8912 3.5582 0.0046 27 6 1.2999 2.3787 -0.0010 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.0429 0.4006 0.0005 32 1 5.0973 2.6484 0.0011 33 1 4.9834 5.4051 -1.6602 34 1 3.2326 5.3585 -1.9777 35 1 3.9399 6.7293 -1.0896 36 1 4.2652 7.5916 0.6784 37 1 5.8218 6.7309 0.6108 38 1 3.4389 8.4730 2.7385 39 1 3.9187 9.1677 5.0490 40 1 5.9203 8.3336 6.2116 41 1 7.4720 6.8133 5.0656 42 1 10.0101 6.8436 3.8785 43 1 0.2213 2.3225 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766843769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:14 Heat of formation + Delta-G solvation = -1.926441 kcal Electronic energy + Delta-G solvation = -27112.645175 eV Core-core repulsion = 23316.612824 eV Total energy + Delta-G solvation = -3796.032351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.92292 -39.52885 -38.12299 -37.19041 -35.00282 -33.56058 -32.54008 -31.79783 -29.92221 -29.39234 -27.81209 -26.89997 -26.39780 -25.02007 -23.53878 -22.93711 -20.89816 -20.39453 -18.93746 -18.33690 -17.28632 -17.12793 -17.05233 -16.36038 -16.00399 -15.43798 -15.01538 -14.78376 -14.45783 -14.27102 -13.87706 -13.55736 -13.51042 -13.33843 -13.03467 -12.75373 -12.65572 -12.52918 -12.28620 -12.18127 -11.75074 -11.62193 -11.52484 -11.15857 -11.04090 -10.97235 -10.63511 -10.34913 -9.80234 -9.77447 -9.46137 -9.33897 -9.25169 -9.18434 -8.63910 -8.42450 -7.28267 -7.21681 -6.65768 -4.33378 0.99628 1.17285 2.75557 2.87733 2.98173 3.08973 3.13114 3.19182 3.26889 3.28224 3.64078 3.96668 4.44112 4.52595 4.71524 4.77901 4.85385 4.94881 5.02607 5.17132 5.26902 5.38258 5.46727 5.51875 5.64602 5.73871 5.80351 5.90109 6.01916 6.09910 6.18809 6.31211 6.43950 6.53801 6.80537 6.87997 7.10540 7.13378 7.32469 7.45213 7.58958 7.71566 7.89947 7.94910 8.10750 8.15276 8.34992 8.67771 8.76822 8.95621 9.04308 10.28186 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.003745 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.954021 B = 7473.883836 C = 8568.669902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.071 3.929 4 C -0.099 4.099 5 C -0.111 4.111 6 C 0.327 3.673 7 N -0.582 5.582 8 C 0.088 3.912 9 C 0.524 3.476 10 O -0.505 6.505 11 C -0.064 4.064 12 C -0.179 4.179 13 C -0.083 4.083 14 C -0.234 4.234 15 C -0.109 4.109 16 C -0.152 4.152 17 C 0.128 3.872 18 C -0.457 4.457 19 H 0.073 0.927 20 C 0.075 3.925 21 N -0.803 5.803 22 Si 0.904 3.096 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.273 1.273 26 N -0.450 5.450 27 C 0.031 3.969 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.119 0.881 42 H 0.278 0.722 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 -8.810 -11.689 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.024 3.976 4 C -0.126 4.126 5 C -0.133 4.133 6 C 0.100 3.900 7 N -0.318 5.318 8 C -0.054 4.054 9 C 0.314 3.686 10 O -0.376 6.376 11 C -0.104 4.104 12 C -0.181 4.181 13 C -0.102 4.102 14 C -0.253 4.253 15 C -0.128 4.128 16 C -0.172 4.172 17 C 0.126 3.874 18 C -0.488 4.488 19 H 0.091 0.909 20 C -0.141 4.141 21 N -0.429 5.429 22 Si 0.729 3.271 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.198 1.198 26 N -0.162 5.162 27 C -0.128 4.128 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.089 0.911 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.443 -8.449 -10.977 17.348 hybrid contribution 0.757 -1.154 -0.256 1.404 sum -9.686 -9.603 -11.234 17.670 Atomic orbital electron populations 1.23116 0.78103 1.04248 1.01668 1.86087 1.21578 1.26015 1.88733 1.20038 0.93216 0.85682 0.98706 1.20824 0.91566 0.98537 1.01689 1.22058 1.01930 0.91211 0.98123 1.18031 0.87111 0.86105 0.98732 1.45482 1.62180 1.15741 1.08410 1.21803 1.01412 0.97662 0.84569 1.21493 0.77847 0.87475 0.81782 1.90703 1.52754 1.63726 1.30431 1.20300 0.99984 0.91662 0.98433 1.19119 1.00525 1.04709 0.93738 1.20321 0.96920 0.98168 0.94760 1.20337 1.00500 1.08155 0.96340 1.20706 0.95385 0.98884 0.97817 1.21347 0.99785 1.01097 0.94946 1.17358 0.89879 0.89406 0.90775 1.19476 0.91652 1.18456 1.19173 0.90896 1.25853 0.99111 0.95318 0.93858 1.69800 1.14925 1.28948 1.29271 0.86321 0.79866 0.81368 0.79506 1.18609 1.20004 1.19835 1.67168 1.12234 1.27115 1.09684 1.22631 1.00176 0.86400 1.03642 0.92428 0.87971 0.92293 0.83610 0.83628 0.92095 0.91513 0.90131 0.90271 0.88110 0.89681 0.89601 0.89529 0.86323 0.91138 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.38 10.51 -19.69 -0.21 -3.59 16 3 C 0.07 0.90 6.71 -39.10 -0.26 0.63 16 4 C -0.10 -1.28 10.12 -39.17 -0.40 -1.68 16 5 C -0.11 -1.66 10.02 -39.26 -0.39 -2.05 16 6 C 0.33 5.49 5.45 -154.58 -0.84 4.64 16 7 N -0.58 -9.83 2.98 -122.73 -0.37 -10.20 16 8 C 0.09 1.05 10.20 59.85 0.61 1.66 16 9 C 0.52 10.89 7.24 -10.98 -0.08 10.81 16 10 O -0.51 -12.85 16.01 5.56 0.09 -12.76 16 11 C -0.06 -1.28 3.87 -29.03 -0.11 -1.39 16 12 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 13 C -0.08 -1.96 9.66 -39.66 -0.38 -2.34 16 14 C -0.23 -5.53 10.05 -39.29 -0.39 -5.93 16 15 C -0.11 -2.70 10.02 -39.66 -0.40 -3.10 16 16 C -0.15 -4.12 8.65 -38.87 -0.34 -4.45 16 17 C 0.13 3.45 5.54 -106.82 -0.59 2.86 16 18 C -0.46 -12.03 8.06 -37.74 -0.30 -12.33 16 19 H 0.07 1.87 6.79 -52.49 -0.36 1.52 16 20 C 0.07 1.88 5.26 -17.34 -0.09 1.78 16 21 N -0.80 -20.81 10.86 55.55 0.60 -20.21 16 22 Si 0.90 18.79 29.57 -169.99 -5.03 13.77 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 N -0.45 -7.41 10.38 -12.22 -0.13 -7.54 16 27 C 0.03 0.41 10.21 -17.39 -0.18 0.23 16 28 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 31 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.08 0.86 6.48 -51.93 -0.34 0.53 16 36 H 0.08 1.32 7.16 -51.93 -0.37 0.94 16 37 H 0.10 1.93 7.12 -51.93 -0.37 1.56 16 38 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.12 3.29 6.27 -52.48 -0.33 2.96 16 42 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 43 H 0.16 1.58 6.30 -52.49 -0.33 1.25 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -33.82 365.33 -8.55 -42.37 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.40 Total: 6.98 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -3.62 Total: -14.33 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.11 Total: -37.94 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.12 Total: -16.35 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.82 -8.55 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766843769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.442 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds