Wall clock time and date at job start Tue Mar 31 2020 14:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35985 * 117.00015 * 2 1 4 4 C 1.39243 * 120.39675 * 179.97438 * 3 2 1 5 5 C 1.38335 * 118.44514 * 180.02562 * 4 3 2 6 6 C 1.39012 * 119.16216 * 359.97438 * 5 4 3 7 7 N 1.39585 * 119.63578 * 179.97438 * 6 5 4 8 8 C 1.46504 * 119.99985 * 94.76471 * 7 6 5 9 9 C 1.34773 * 120.00137 * 274.76113 * 7 6 5 10 10 O 1.21281 * 120.00046 * 354.95644 * 9 7 6 11 11 C 1.50706 * 119.99775 * 174.95558 * 9 7 6 12 12 C 1.50704 * 109.46710 * 180.02562 * 11 9 7 13 13 C 1.37637 * 120.12757 * 264.99681 * 12 11 9 14 14 C 1.38609 * 120.25043 * 180.29931 * 13 12 11 15 15 C 1.38661 * 120.50028 * 359.44884 * 14 13 12 16 16 C 1.37597 * 120.24445 * 0.55450 * 15 14 13 17 17 C 1.40698 * 120.12685 * 85.02347 * 12 11 9 18 18 C 1.41394 * 120.24637 * 359.95559 * 17 12 11 19 19 H 1.08001 * 119.99519 * 330.33598 * 18 17 12 20 20 C 1.39943 * 120.00225 * 150.33189 * 18 17 12 21 21 N 1.30825 * 119.99892 * 350.02774 * 20 18 17 22 22 Si 1.86799 * 120.00111 * 170.03343 * 20 18 17 23 23 H 1.48496 * 109.47018 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47162 * 119.99885 * 22 20 18 25 25 H 1.48499 * 109.46893 * 240.00020 * 22 20 18 26 26 N 1.32303 * 120.72328 * 0.25761 * 6 5 4 27 27 C 1.31942 * 121.69316 * 359.47563 * 26 6 5 28 28 H 1.09002 * 109.47230 * 60.00004 * 1 2 3 29 29 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47347 * 300.00327 * 1 2 3 31 31 H 1.07999 * 120.77393 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.41695 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47003 * 270.00081 * 8 7 6 34 34 H 1.09002 * 109.47006 * 29.99730 * 8 7 6 35 35 H 1.08996 * 109.47326 * 149.99703 * 8 7 6 36 36 H 1.09001 * 109.47110 * 60.00295 * 11 9 7 37 37 H 1.08998 * 109.47479 * 299.99770 * 11 9 7 38 38 H 1.08006 * 119.87691 * 0.02884 * 13 12 11 39 39 H 1.08002 * 119.75356 * 179.70382 * 14 13 12 40 40 H 1.07997 * 119.87771 * 180.30023 * 15 14 13 41 41 H 1.08003 * 120.12878 * 179.74617 * 16 15 14 42 42 H 0.97001 * 120.00117 * 179.97438 * 21 20 18 43 43 H 1.08002 * 119.61151 * 180.28838 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4364 1.2941 0.0005 5 6 4.0221 2.5474 0.0011 6 6 3.2091 3.6750 0.0005 7 7 3.7896 4.9444 0.0016 8 6 3.9999 5.6548 -1.2624 9 6 4.1566 5.5166 1.1653 10 8 3.9002 4.9701 2.2172 11 6 4.8858 6.8355 1.1594 12 6 5.1793 7.2535 2.5773 13 6 4.3229 8.1047 3.2379 14 6 4.5937 8.4957 4.5399 15 6 5.7217 8.0263 5.1955 16 6 6.5918 7.1745 4.5545 17 6 6.3300 6.7754 3.2306 18 6 7.2168 5.9002 2.5621 19 1 6.8430 5.2290 1.8030 20 6 8.5787 5.9036 2.8840 21 7 9.0662 6.8414 3.6550 22 14 9.7005 4.5694 2.2126 23 1 8.9098 3.6342 1.3728 24 1 10.7705 5.1896 1.3906 25 1 10.3129 3.8235 3.3412 26 7 1.8912 3.5582 0.0046 27 6 1.2999 2.3787 -0.0010 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.0429 0.4006 0.0005 32 1 5.0973 2.6484 0.0011 33 1 4.9834 5.4051 -1.6602 34 1 3.2326 5.3585 -1.9777 35 1 3.9399 6.7293 -1.0896 36 1 4.2652 7.5916 0.6784 37 1 5.8218 6.7309 0.6108 38 1 3.4389 8.4730 2.7385 39 1 3.9187 9.1677 5.0490 40 1 5.9203 8.3336 6.2116 41 1 7.4720 6.8133 5.0656 42 1 10.0101 6.8436 3.8785 43 1 0.2213 2.3225 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766843769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:13 Heat of formation + Delta-G solvation = -21.984699 kcal Electronic energy + Delta-G solvation = -27113.514966 eV Core-core repulsion = 23316.612824 eV Total energy + Delta-G solvation = -3796.902143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02934 -40.84198 -39.45261 -38.74476 -36.36497 -35.45819 -33.58723 -33.50081 -31.36142 -30.99312 -28.70367 -28.33246 -27.54036 -26.87187 -24.63947 -24.08290 -22.80645 -21.97267 -20.48508 -19.22799 -19.02570 -18.42169 -18.29998 -17.69644 -17.23454 -16.80176 -16.38580 -16.25605 -15.85552 -15.44336 -15.36359 -15.00463 -14.87171 -14.52676 -14.36130 -14.24530 -13.89658 -13.84021 -13.53143 -13.38533 -13.22816 -12.85562 -12.80614 -12.76340 -12.66874 -12.48456 -12.39109 -12.08279 -11.32482 -11.20585 -11.05122 -10.98881 -10.86097 -10.78524 -9.87326 -9.46946 -9.19338 -9.13774 -8.53128 -6.30304 -0.07441 0.11852 0.98432 1.12831 1.38041 1.51583 1.52624 1.67127 1.84683 2.19659 2.22735 2.57114 2.82064 3.47326 3.53619 3.68680 3.92365 3.93333 4.07864 4.28812 4.33137 4.36448 4.38439 4.41148 4.48555 4.55296 4.63230 4.70239 4.70514 4.75956 4.76609 4.89589 4.91871 5.05795 5.16593 5.22153 5.37730 5.55009 5.76664 5.79253 6.03389 6.14858 6.16592 6.20775 6.29807 6.43066 6.74689 6.79227 7.01535 7.11541 7.27212 8.43072 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.003745 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.954021 B = 7473.883836 C = 8568.669902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.079 3.921 4 C -0.102 4.102 5 C -0.123 4.123 6 C 0.294 3.706 7 N -0.575 5.575 8 C 0.079 3.921 9 C 0.526 3.474 10 O -0.565 6.565 11 C -0.060 4.060 12 C -0.185 4.185 13 C -0.095 4.095 14 C -0.238 4.238 15 C -0.119 4.119 16 C -0.187 4.187 17 C 0.096 3.904 18 C -0.481 4.481 19 H 0.070 0.930 20 C 0.034 3.966 21 N -0.834 5.834 22 Si 0.973 3.027 23 H -0.258 1.258 24 H -0.261 1.261 25 H -0.272 1.272 26 N -0.476 5.476 27 C 0.027 3.973 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.063 0.937 31 H 0.169 0.831 32 H 0.146 0.854 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.284 0.716 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.378 -9.773 -13.619 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.031 3.969 4 C -0.128 4.128 5 C -0.145 4.145 6 C 0.069 3.931 7 N -0.308 5.308 8 C -0.062 4.062 9 C 0.316 3.684 10 O -0.442 6.442 11 C -0.100 4.100 12 C -0.187 4.187 13 C -0.113 4.113 14 C -0.257 4.257 15 C -0.138 4.138 16 C -0.206 4.206 17 C 0.094 3.906 18 C -0.511 4.511 19 H 0.088 0.912 20 C -0.180 4.180 21 N -0.461 5.461 22 Si 0.795 3.205 23 H -0.182 1.182 24 H -0.185 1.185 25 H -0.197 1.197 26 N -0.188 5.188 27 C -0.132 4.132 28 H 0.092 0.908 29 H 0.145 0.855 30 H 0.082 0.918 31 H 0.187 0.813 32 H 0.163 0.837 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -11.724 -9.399 -12.968 19.848 hybrid contribution 0.958 -0.913 0.320 1.362 sum -10.765 -10.312 -12.648 19.550 Atomic orbital electron populations 1.23488 0.75786 1.06326 1.02656 1.86098 1.23935 1.24871 1.88151 1.20083 0.93231 0.86300 0.97252 1.21097 0.92307 0.98589 1.00832 1.22107 1.01929 0.91667 0.98781 1.18228 0.87751 0.86256 1.00885 1.45407 1.60748 1.15978 1.08683 1.22136 1.03012 0.98137 0.82927 1.21481 0.77428 0.87394 0.82063 1.90668 1.55495 1.65246 1.32748 1.20302 1.00914 0.92510 0.96227 1.19586 0.99495 1.03838 0.95777 1.20755 0.97697 0.97826 0.95019 1.20738 1.00292 1.07987 0.96671 1.20973 0.95510 0.98466 0.98830 1.21354 1.00312 1.03214 0.95738 1.17754 0.91392 0.90355 0.91143 1.19612 0.92547 1.19072 1.19883 0.91186 1.26667 1.00171 0.97190 0.93931 1.69874 1.15613 1.30415 1.30244 0.85286 0.77930 0.78407 0.78916 1.18162 1.18502 1.19721 1.67128 1.12169 1.28750 1.10741 1.23111 1.01574 0.85809 1.02732 0.90838 0.85495 0.91846 0.81338 0.83655 0.90353 0.89934 0.88685 0.86645 0.87608 0.86682 0.86648 0.87619 0.88352 0.90541 0.79580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.82 113.37 1.11 1.23 16 2 O -0.32 -6.12 10.51 -93.38 -0.98 -7.10 16 3 C 0.08 1.87 6.71 22.58 0.15 2.02 16 4 C -0.10 -2.51 10.12 22.53 0.23 -2.28 16 5 C -0.12 -3.64 10.02 22.48 0.23 -3.41 16 6 C 0.29 9.79 5.45 132.86 0.72 10.52 16 7 N -0.57 -19.06 2.98 -660.59 -1.97 -21.02 16 8 C 0.08 1.74 10.20 127.77 1.30 3.04 16 9 C 0.53 21.87 7.24 87.66 0.63 22.51 16 10 O -0.57 -29.54 16.01 -3.03 -0.05 -29.59 16 11 C -0.06 -2.36 3.87 29.11 0.11 -2.25 16 12 C -0.19 -9.07 4.43 -19.40 -0.09 -9.16 16 13 C -0.09 -4.38 9.66 22.22 0.21 -4.17 16 14 C -0.24 -11.07 10.05 22.46 0.23 -10.84 16 15 C -0.12 -6.00 10.02 22.22 0.22 -5.78 16 16 C -0.19 -10.49 8.65 22.73 0.20 -10.30 16 17 C 0.10 5.32 5.54 -21.29 -0.12 5.20 16 18 C -0.48 -26.09 8.06 23.46 0.19 -25.90 16 19 H 0.07 3.71 6.79 -2.91 -0.02 3.69 16 20 C 0.03 1.72 5.26 85.26 0.45 2.17 16 21 N -0.83 -44.59 10.86 21.83 0.24 -44.35 16 22 Si 0.97 38.95 29.57 68.60 2.03 40.98 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 26 N -0.48 -15.29 10.38 -192.57 -2.00 -17.29 16 27 C 0.03 0.68 10.21 84.75 0.87 1.54 16 28 H 0.07 0.56 7.67 -2.39 -0.02 0.54 16 29 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.63 7.68 -2.39 -0.02 0.61 16 31 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 32 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.57 8.05 -2.39 -0.02 1.55 16 35 H 0.09 1.80 6.48 -2.39 -0.02 1.78 16 36 H 0.12 3.58 7.16 -2.39 -0.02 3.56 16 37 H 0.11 4.01 7.12 -2.39 -0.02 3.99 16 38 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.10 5.79 6.27 -2.91 -0.02 5.77 16 42 H 0.28 13.79 8.30 -92.71 -0.77 13.02 16 43 H 0.19 3.28 6.30 -2.91 -0.02 3.26 16 Total: -1.00 -76.59 365.33 4.95 -71.64 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 1.03 Total: 32.60 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 6.65 Total: -25.86 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -3.73 Total: -82.67 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.03 Total: -36.69 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -76.59 4.95 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766843769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.655 kcal (2) G-P(sol) polarization free energy of solvation -76.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds