Wall clock time and date at job start Tue Mar 31 2020 14:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99935 * 2 1 4 4 C 1.39003 * 120.00236 * 180.02562 * 2 1 3 5 5 C 1.39136 * 119.70435 * 4.73068 * 4 2 1 6 6 C 1.38296 * 119.09612 * 179.70808 * 5 4 2 7 7 C 1.50708 * 120.74918 * 180.29892 * 6 5 4 8 8 O 1.45193 * 109.47112 * 270.25681 * 7 6 5 9 9 C 1.34776 * 116.99783 * 179.97438 * 8 7 6 10 10 O 1.21509 * 120.00301 * 0.02562 * 9 8 7 11 11 C 1.47503 * 120.00271 * 179.97438 * 9 8 7 12 12 C 1.40074 * 119.89943 * 359.72764 * 11 9 8 13 13 C 1.36302 * 120.10040 * 179.76129 * 12 11 9 14 14 C 1.40898 * 119.89475 * 0.51331 * 13 12 11 15 15 C 1.41101 * 120.09381 * 179.72121 * 14 13 12 16 16 H 1.07996 * 119.99655 * 205.08996 * 15 14 13 17 17 C 1.40242 * 120.00075 * 25.08472 * 15 14 13 18 18 N 1.30634 * 120.00010 * 18.01717 * 17 15 14 19 19 Si 1.86800 * 119.99797 * 198.01699 * 17 15 14 20 20 H 1.48500 * 109.47133 * 94.52852 * 19 17 15 21 21 H 1.48499 * 109.46974 * 214.52627 * 19 17 15 22 22 H 1.48503 * 109.47216 * 334.52464 * 19 17 15 23 23 C 1.40895 * 119.81056 * 359.74060 * 14 13 12 24 24 C 1.36302 * 119.89169 * 0.02562 * 23 14 13 25 25 C 1.38885 * 118.50496 * 0.55182 * 6 5 4 26 26 C 1.38015 * 119.32713 * 359.72858 * 25 6 5 27 27 N 1.31966 * 120.86047 * 359.97438 * 26 25 6 28 28 H 1.08995 * 109.47154 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46886 * 239.99783 * 1 2 3 30 30 H 1.09003 * 109.46807 * 119.99569 * 1 2 3 31 31 H 1.09008 * 109.46976 * 90.00088 * 3 2 1 32 32 H 1.08995 * 109.47447 * 209.99806 * 3 2 1 33 33 H 1.09001 * 109.47415 * 330.00610 * 3 2 1 34 34 H 1.07998 * 120.45084 * 359.97438 * 5 4 2 35 35 H 1.08998 * 109.46615 * 30.26082 * 7 6 5 36 36 H 1.08998 * 109.46815 * 150.25455 * 7 6 5 37 37 H 1.07993 * 119.94544 * 0.02562 * 12 11 9 38 38 H 1.07996 * 120.04892 * 180.22866 * 13 12 11 39 39 H 0.96998 * 120.00054 * 179.97438 * 18 17 15 40 40 H 1.07994 * 120.05750 * 179.97438 * 23 14 13 41 41 H 1.08006 * 119.95022 * 179.97438 * 24 23 14 42 42 H 1.08000 * 120.33450 * 179.75240 * 25 6 5 43 43 H 1.08008 * 119.56828 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2038 -0.0005 5 6 1.4618 -2.4030 -0.1007 6 6 2.1664 -3.5931 -0.1062 7 6 1.4483 -4.9132 -0.2199 8 8 1.1145 -5.3984 1.1072 9 6 0.4641 -6.5764 1.1823 10 8 0.1841 -7.1817 0.1665 11 6 0.0930 -7.1316 2.4975 12 6 0.4228 -6.4355 3.6675 13 6 0.0776 -6.9424 4.8847 14 6 -0.6023 -8.1738 4.9655 15 6 -0.9564 -8.7053 6.2237 16 1 -1.0938 -9.7700 6.3408 17 6 -1.1298 -7.8509 7.3222 18 7 -1.3143 -6.5717 7.1320 19 14 -1.0969 -8.5420 9.0573 20 1 0.2740 -8.4165 9.6143 21 1 -2.0487 -7.7852 9.9097 22 1 -1.4899 -9.9738 9.0274 23 6 -0.9272 -8.8732 3.7863 24 6 -0.5824 -8.3564 2.5731 25 6 3.5503 -3.5444 0.0008 26 6 4.1778 -2.3195 0.1030 27 7 3.4802 -1.1992 0.0996 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 -0.5138 -0.8901 31 1 2.3792 1.5834 1.0277 32 1 3.1499 1.1385 -0.5138 33 1 1.6084 2.0285 -0.5137 34 1 0.3846 -2.4044 -0.1776 35 1 0.5345 -4.7809 -0.7990 36 1 2.0936 -5.6359 -0.7193 37 1 0.9475 -5.4937 3.6046 38 1 0.3290 -6.4032 5.7861 39 1 -1.4346 -5.9808 7.8918 40 1 -1.4480 -9.8175 3.8436 41 1 -0.8306 -8.8919 1.6686 42 1 4.1295 -4.4560 0.0037 43 1 5.2538 -2.2771 0.1868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767578984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:14 Heat of formation + Delta-G solvation = -24.831565 kcal Electronic energy + Delta-G solvation = -25869.799543 eV Core-core repulsion = 22072.773951 eV Total energy + Delta-G solvation = -3797.025592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45983 -39.51813 -37.50931 -36.74221 -35.69896 -33.96806 -33.16601 -30.53157 -30.37664 -29.53076 -28.64497 -27.19149 -25.89589 -25.20534 -22.85398 -22.30268 -21.00723 -20.77895 -19.96897 -17.58229 -17.40254 -16.91762 -16.90216 -16.05024 -15.74388 -15.49747 -15.46250 -15.38811 -14.54803 -14.29579 -14.06400 -13.62898 -13.38289 -13.30799 -12.85075 -12.82837 -12.76342 -12.48399 -12.28406 -12.16368 -12.08075 -11.82110 -11.75846 -11.43749 -11.33741 -11.00616 -10.72771 -10.21836 -10.17386 -10.09422 -9.78868 -9.61031 -9.52212 -9.42870 -9.35620 -7.77675 -7.68542 -7.66262 -7.11878 -4.69825 1.13833 1.33064 2.02792 2.76221 2.85133 2.91758 2.95037 3.01023 3.39359 3.60712 3.69134 3.97983 4.42032 4.44664 4.62534 4.75960 4.94692 5.05732 5.15275 5.17366 5.20094 5.39295 5.45505 5.47169 5.49188 5.50469 5.65543 5.72078 5.83350 5.98489 6.19062 6.24115 6.35383 6.49406 6.72488 6.75195 6.77940 6.96348 6.99554 7.08310 7.21501 7.39495 7.64616 7.75821 7.81627 7.98484 8.05574 8.33290 8.54289 8.67105 8.70631 9.79662 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.002557 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.216202 B =10949.459888 C =12050.270237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.621 5.621 3 C 0.103 3.897 4 C 0.397 3.603 5 C -0.211 4.211 6 C -0.003 4.003 7 C 0.107 3.893 8 O -0.352 6.352 9 C 0.515 3.485 10 O -0.552 6.552 11 C -0.274 4.274 12 C -0.042 4.042 13 C -0.184 4.184 14 C 0.132 3.868 15 C -0.435 4.435 16 H 0.088 0.912 17 C 0.073 3.927 18 N -0.763 5.763 19 Si 0.916 3.084 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.239 4.239 24 C -0.018 4.018 25 C -0.210 4.210 26 C 0.144 3.856 27 N -0.539 5.539 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.132 0.868 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.289 0.711 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 12.007 -8.824 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.336 5.336 3 C -0.040 4.040 4 C 0.163 3.837 5 C -0.236 4.236 6 C -0.011 4.011 7 C 0.033 3.967 8 O -0.270 6.270 9 C 0.368 3.632 10 O -0.446 6.446 11 C -0.277 4.277 12 C -0.061 4.061 13 C -0.203 4.203 14 C 0.128 3.872 15 C -0.461 4.461 16 H 0.106 0.894 17 C -0.150 4.150 18 N -0.386 5.386 19 Si 0.739 3.261 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.258 4.258 24 C -0.036 4.036 25 C -0.232 4.232 26 C -0.013 4.013 27 N -0.257 5.257 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.152 0.848 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.536 13.060 -8.938 16.766 hybrid contribution -0.531 -0.923 0.597 1.221 sum 5.005 12.137 -8.341 15.554 Atomic orbital electron populations 1.21689 0.78327 1.02844 1.01806 1.46151 1.05090 1.02969 1.79342 1.21539 0.97330 0.83862 1.01254 1.18219 0.88381 0.85668 0.91427 1.21305 1.00973 0.91168 1.10146 1.19720 0.93593 0.93514 0.94246 1.21577 0.99345 0.91719 0.84078 1.86672 1.70681 1.38616 1.31036 1.21614 0.73656 0.77313 0.90660 1.90699 1.55327 1.60685 1.37927 1.18195 1.20098 1.01067 0.88321 1.20645 0.96137 0.97069 0.92210 1.20993 1.03860 0.99160 0.96337 1.17855 0.86070 0.90903 0.92349 1.19944 1.37839 0.95572 0.92787 0.89417 1.26161 0.91906 0.94467 1.02442 1.69743 1.29312 1.04894 1.34603 0.86157 0.79373 0.80496 0.80061 1.18866 1.19880 1.18130 1.20685 1.10269 1.02915 0.91965 1.20352 0.93479 0.92737 0.97049 1.21782 0.94385 0.99698 1.07353 1.22351 0.99509 0.86659 0.92807 1.67128 1.06194 1.32045 1.20342 0.90381 0.92165 0.92463 0.93532 0.90661 0.92041 0.84965 0.90639 0.90377 0.88091 0.86144 0.89987 0.88029 0.87918 0.84838 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 9.40 59.85 0.56 1.36 16 2 N -0.62 -6.76 3.39 -189.66 -0.64 -7.41 16 3 C 0.10 0.90 10.39 59.85 0.62 1.52 16 4 C 0.40 5.27 7.37 -155.02 -1.14 4.13 16 5 C -0.21 -2.85 9.04 -39.23 -0.35 -3.20 16 6 C 0.00 -0.04 5.55 -104.36 -0.58 -0.62 16 7 C 0.11 1.66 5.64 36.01 0.20 1.86 16 8 O -0.35 -6.86 9.43 -40.70 -0.38 -7.24 16 9 C 0.51 11.35 7.89 34.51 0.27 11.63 16 10 O -0.55 -12.78 16.11 -19.27 -0.31 -13.09 16 11 C -0.27 -6.44 5.89 -104.75 -0.62 -7.06 16 12 C -0.04 -0.98 9.55 -39.59 -0.38 -1.36 16 13 C -0.18 -4.58 8.63 -39.27 -0.34 -4.92 16 14 C 0.13 3.32 5.57 -106.80 -0.59 2.72 16 15 C -0.43 -10.59 9.04 -37.74 -0.34 -10.93 16 16 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 17 C 0.07 1.67 5.13 -17.31 -0.09 1.58 16 18 N -0.76 -18.09 10.99 55.56 0.61 -17.48 16 19 Si 0.92 16.92 29.60 -169.99 -5.03 11.89 16 20 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 23 C -0.24 -5.68 9.73 -39.27 -0.38 -6.06 16 24 C -0.02 -0.41 9.52 -39.59 -0.38 -0.79 16 25 C -0.21 -2.63 9.81 -39.42 -0.39 -3.02 16 26 C 0.14 1.70 11.17 -17.58 -0.20 1.51 16 27 N -0.54 -7.22 9.16 -12.44 -0.11 -7.34 16 28 H 0.08 0.46 7.79 -51.93 -0.40 0.05 16 29 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.06 0.43 7.74 -51.93 -0.40 0.03 16 31 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.07 0.71 7.45 -51.93 -0.39 0.33 16 33 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 34 H 0.13 1.62 6.71 -52.49 -0.35 1.27 16 35 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.10 2.21 7.59 -52.49 -0.40 1.81 16 38 H 0.12 3.03 6.19 -52.49 -0.33 2.70 16 39 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 40 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.10 2.26 7.63 -52.48 -0.40 1.86 16 42 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.16 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -29.33 371.18 -9.98 -39.31 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.58 Total: 7.40 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -4.12 Total: -11.64 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: -0.15 Total: -32.22 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.69 Total: -20.33 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.33 -9.98 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767578984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.481 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds