Wall clock time and date at job start Tue Mar 31 2020 14:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99935 * 2 1 4 4 C 1.39003 * 120.00236 * 180.02562 * 2 1 3 5 5 C 1.39136 * 119.70435 * 4.73068 * 4 2 1 6 6 C 1.38296 * 119.09612 * 179.70808 * 5 4 2 7 7 C 1.50708 * 120.74918 * 180.29892 * 6 5 4 8 8 O 1.45193 * 109.47112 * 270.25681 * 7 6 5 9 9 C 1.34776 * 116.99783 * 179.97438 * 8 7 6 10 10 O 1.21509 * 120.00301 * 0.02562 * 9 8 7 11 11 C 1.47503 * 120.00271 * 179.97438 * 9 8 7 12 12 C 1.40074 * 119.89943 * 359.72764 * 11 9 8 13 13 C 1.36302 * 120.10040 * 179.76129 * 12 11 9 14 14 C 1.40898 * 119.89475 * 0.51331 * 13 12 11 15 15 C 1.41101 * 120.09381 * 179.72121 * 14 13 12 16 16 H 1.07996 * 119.99655 * 205.08996 * 15 14 13 17 17 C 1.40242 * 120.00075 * 25.08472 * 15 14 13 18 18 N 1.30634 * 120.00010 * 18.01717 * 17 15 14 19 19 Si 1.86800 * 119.99797 * 198.01699 * 17 15 14 20 20 H 1.48500 * 109.47133 * 94.52852 * 19 17 15 21 21 H 1.48499 * 109.46974 * 214.52627 * 19 17 15 22 22 H 1.48503 * 109.47216 * 334.52464 * 19 17 15 23 23 C 1.40895 * 119.81056 * 359.74060 * 14 13 12 24 24 C 1.36302 * 119.89169 * 0.02562 * 23 14 13 25 25 C 1.38885 * 118.50496 * 0.55182 * 6 5 4 26 26 C 1.38015 * 119.32713 * 359.72858 * 25 6 5 27 27 N 1.31966 * 120.86047 * 359.97438 * 26 25 6 28 28 H 1.08995 * 109.47154 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46886 * 239.99783 * 1 2 3 30 30 H 1.09003 * 109.46807 * 119.99569 * 1 2 3 31 31 H 1.09008 * 109.46976 * 90.00088 * 3 2 1 32 32 H 1.08995 * 109.47447 * 209.99806 * 3 2 1 33 33 H 1.09001 * 109.47415 * 330.00610 * 3 2 1 34 34 H 1.07998 * 120.45084 * 359.97438 * 5 4 2 35 35 H 1.08998 * 109.46615 * 30.26082 * 7 6 5 36 36 H 1.08998 * 109.46815 * 150.25455 * 7 6 5 37 37 H 1.07993 * 119.94544 * 0.02562 * 12 11 9 38 38 H 1.07996 * 120.04892 * 180.22866 * 13 12 11 39 39 H 0.96998 * 120.00054 * 179.97438 * 18 17 15 40 40 H 1.07994 * 120.05750 * 179.97438 * 23 14 13 41 41 H 1.08006 * 119.95022 * 179.97438 * 24 23 14 42 42 H 1.08000 * 120.33450 * 179.75240 * 25 6 5 43 43 H 1.08008 * 119.56828 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2038 -0.0005 5 6 1.4618 -2.4030 -0.1007 6 6 2.1664 -3.5931 -0.1062 7 6 1.4483 -4.9132 -0.2199 8 8 1.1145 -5.3984 1.1072 9 6 0.4641 -6.5764 1.1823 10 8 0.1841 -7.1817 0.1665 11 6 0.0930 -7.1316 2.4975 12 6 0.4228 -6.4355 3.6675 13 6 0.0776 -6.9424 4.8847 14 6 -0.6023 -8.1738 4.9655 15 6 -0.9564 -8.7053 6.2237 16 1 -1.0938 -9.7700 6.3408 17 6 -1.1298 -7.8509 7.3222 18 7 -1.3143 -6.5717 7.1320 19 14 -1.0969 -8.5420 9.0573 20 1 0.2740 -8.4165 9.6143 21 1 -2.0487 -7.7852 9.9097 22 1 -1.4899 -9.9738 9.0274 23 6 -0.9272 -8.8732 3.7863 24 6 -0.5824 -8.3564 2.5731 25 6 3.5503 -3.5444 0.0008 26 6 4.1778 -2.3195 0.1030 27 7 3.4802 -1.1992 0.0996 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 -0.5138 -0.8901 31 1 2.3792 1.5834 1.0277 32 1 3.1499 1.1385 -0.5138 33 1 1.6084 2.0285 -0.5137 34 1 0.3846 -2.4044 -0.1776 35 1 0.5345 -4.7809 -0.7990 36 1 2.0936 -5.6359 -0.7193 37 1 0.9475 -5.4937 3.6046 38 1 0.3290 -6.4032 5.7861 39 1 -1.4346 -5.9808 7.8918 40 1 -1.4480 -9.8175 3.8436 41 1 -0.8306 -8.8919 1.6686 42 1 4.1295 -4.4560 0.0037 43 1 5.2538 -2.2771 0.1868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767578984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:13 Heat of formation + Delta-G solvation = -37.439280 kcal Electronic energy + Delta-G solvation = -25870.346254 eV Core-core repulsion = 22072.773951 eV Total energy + Delta-G solvation = -3797.572304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.56459 -41.03569 -39.28498 -37.74215 -37.16704 -35.75382 -34.27787 -32.19098 -31.42689 -31.38775 -29.48318 -28.48306 -27.44728 -26.08021 -24.24586 -23.57975 -22.83986 -21.84065 -21.64761 -19.40797 -18.65451 -18.41940 -17.95762 -17.58192 -17.04145 -16.91811 -16.65669 -16.26783 -15.79585 -15.53569 -15.26044 -15.18793 -14.92139 -14.43259 -14.30600 -14.15077 -13.98273 -13.74560 -13.48462 -13.36656 -13.25277 -13.11281 -12.94820 -12.87069 -12.68163 -12.63007 -12.40286 -11.81732 -11.68869 -11.45799 -11.33964 -11.16129 -10.96280 -10.66000 -10.49315 -9.64254 -9.53935 -8.85754 -8.55057 -6.55813 0.08738 0.22707 0.36126 1.12722 1.36166 1.41355 1.54756 1.87659 1.92432 2.03474 2.14725 2.67137 2.94031 3.42048 3.61238 3.64966 3.83611 4.04417 4.12083 4.20096 4.27792 4.34378 4.39952 4.45455 4.46773 4.48568 4.54067 4.74294 4.78371 4.85267 4.86047 4.91905 4.97381 4.97812 5.10862 5.21110 5.35838 5.38394 5.55117 5.57257 5.80297 5.89940 5.95679 5.98377 6.14246 6.32868 6.48446 6.69562 6.81160 6.99286 7.11510 8.09248 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.002557 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.216202 B =10949.459888 C =12050.270237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.624 5.624 3 C 0.102 3.898 4 C 0.384 3.616 5 C -0.224 4.224 6 C -0.018 4.018 7 C 0.106 3.894 8 O -0.356 6.356 9 C 0.521 3.479 10 O -0.566 6.566 11 C -0.290 4.290 12 C -0.039 4.039 13 C -0.202 4.202 14 C 0.105 3.895 15 C -0.458 4.458 16 H 0.094 0.906 17 C 0.035 3.965 18 N -0.791 5.791 19 Si 0.991 3.009 20 H -0.260 1.260 21 H -0.265 1.265 22 H -0.253 1.253 23 C -0.249 4.249 24 C -0.022 4.022 25 C -0.216 4.216 26 C 0.145 3.855 27 N -0.553 5.553 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.299 0.701 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.149 0.851 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.696 12.747 -8.396 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.338 5.338 3 C -0.041 4.041 4 C 0.149 3.851 5 C -0.248 4.248 6 C -0.026 4.026 7 C 0.033 3.967 8 O -0.274 6.274 9 C 0.374 3.626 10 O -0.462 6.462 11 C -0.292 4.292 12 C -0.058 4.058 13 C -0.222 4.222 14 C 0.102 3.898 15 C -0.484 4.484 16 H 0.112 0.888 17 C -0.185 4.185 18 N -0.414 5.414 19 Si 0.810 3.190 20 H -0.184 1.184 21 H -0.189 1.189 22 H -0.176 1.176 23 C -0.268 4.268 24 C -0.040 4.040 25 C -0.239 4.239 26 C -0.012 4.012 27 N -0.271 5.271 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.155 0.845 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.166 0.834 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.872 13.838 -8.533 17.285 hybrid contribution -0.619 -1.029 0.395 1.264 sum 5.253 12.809 -8.139 16.059 Atomic orbital electron populations 1.21855 0.77016 1.04619 1.01587 1.46473 1.06115 1.02867 1.78393 1.21648 0.97390 0.83608 1.01437 1.18490 0.88641 0.86530 0.91391 1.21408 1.01365 0.91349 1.10727 1.19714 0.94345 0.92812 0.95688 1.21817 1.00011 0.92690 0.82212 1.86630 1.69882 1.37264 1.33606 1.21315 0.73573 0.77864 0.89849 1.90680 1.55967 1.61324 1.38181 1.18426 1.20251 1.01360 0.89176 1.20733 0.95782 0.97344 0.91921 1.20983 1.05034 0.99667 0.96470 1.18197 0.86772 0.91443 0.93403 1.20260 1.38498 0.96258 0.93416 0.88786 1.27045 0.90748 0.94496 1.06207 1.69770 1.29042 1.06154 1.36422 0.85039 0.79532 0.79861 0.74531 1.18428 1.18929 1.17610 1.20875 1.10565 1.03527 0.91830 1.20522 0.93268 0.92884 0.97348 1.22000 0.93927 1.00757 1.07216 1.22889 1.00946 0.86002 0.91385 1.67225 1.06363 1.32723 1.20834 0.87658 0.93118 0.91928 0.93671 0.91580 0.89222 0.84485 0.90169 0.89442 0.87026 0.87043 0.88938 0.86663 0.86822 0.83369 0.79448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 9.40 127.77 1.20 2.59 16 2 N -0.62 -12.85 3.39 -753.97 -2.56 -15.41 16 3 C 0.10 1.61 10.39 127.77 1.33 2.94 16 4 C 0.38 9.92 7.37 133.06 0.98 10.90 16 5 C -0.22 -5.95 9.04 22.50 0.20 -5.75 16 6 C -0.02 -0.48 5.55 -19.69 -0.11 -0.59 16 7 C 0.11 3.24 5.64 71.24 0.40 3.64 16 8 O -0.36 -13.80 9.43 -56.87 -0.54 -14.33 16 9 C 0.52 22.94 7.89 70.26 0.55 23.49 16 10 O -0.57 -26.00 16.11 19.80 0.32 -25.68 16 11 C -0.29 -13.70 5.89 -19.94 -0.12 -13.82 16 12 C -0.04 -1.86 9.55 22.26 0.21 -1.65 16 13 C -0.20 -10.27 8.63 22.47 0.19 -10.08 16 14 C 0.11 5.39 5.57 -21.28 -0.12 5.28 16 15 C -0.46 -22.42 9.04 23.46 0.21 -22.21 16 16 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 17 C 0.04 1.60 5.13 85.36 0.44 2.04 16 18 N -0.79 -37.55 10.99 21.87 0.24 -37.31 16 19 Si 0.99 33.78 29.60 68.60 2.03 35.81 16 20 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 21 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 22 H -0.25 -8.36 7.11 99.48 0.71 -7.65 16 23 C -0.25 -11.94 9.73 22.47 0.22 -11.72 16 24 C -0.02 -1.02 9.52 22.26 0.21 -0.80 16 25 C -0.22 -5.19 9.81 22.37 0.22 -4.97 16 26 C 0.14 3.22 11.17 84.62 0.95 4.16 16 27 N -0.55 -14.23 9.16 -193.27 -1.77 -16.00 16 28 H 0.10 0.98 7.79 -2.39 -0.02 0.96 16 29 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 30 H 0.06 0.88 7.74 -2.39 -0.02 0.86 16 31 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.07 1.18 7.45 -2.39 -0.02 1.16 16 33 H 0.09 0.90 7.92 -2.39 -0.02 0.88 16 34 H 0.14 3.36 6.71 -2.91 -0.02 3.34 16 35 H 0.08 2.35 8.10 -2.39 -0.02 2.33 16 36 H 0.09 2.49 8.10 -2.39 -0.02 2.47 16 37 H 0.11 4.94 7.59 -2.91 -0.02 4.92 16 38 H 0.11 5.76 6.19 -2.91 -0.02 5.74 16 39 H 0.30 12.59 8.29 -92.71 -0.77 11.82 16 40 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 41 H 0.11 4.99 7.63 -2.91 -0.02 4.97 16 42 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 43 H 0.19 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -62.59 371.18 5.73 -56.86 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 1.03 Total: 32.61 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 6.97 Total: -16.56 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -4.09 Total: -68.71 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -0.22 Total: -40.01 kcal Atomic # 14 Polarization: 33.78 SS G_CDS: 2.03 Total: 35.81 kcal Total: -62.59 5.73 -56.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767578984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.426 kcal (2) G-P(sol) polarization free energy of solvation -62.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds