Wall clock time and date at job start Tue Mar 31 2020 14:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39906 * 125.78891 * 2 1 4 4 C 1.30443 * 109.23881 * 180.02562 * 3 2 1 5 5 C 1.41151 * 108.29371 * 0.02562 * 4 3 2 6 6 C 1.47014 * 126.49386 * 179.97438 * 5 4 3 7 7 O 1.21566 * 119.99836 * 174.12297 * 6 5 4 8 8 O 1.34797 * 120.00216 * 353.85124 * 6 5 4 9 9 C 1.45201 * 117.00155 * 175.25890 * 8 6 5 10 10 C 1.53003 * 109.46978 * 184.73897 * 9 8 6 11 11 C 1.50704 * 115.54531 * 184.82054 * 10 9 8 12 12 H 1.08004 * 119.99721 * 142.94864 * 11 10 9 13 13 C 1.37871 * 120.00327 * 322.94707 * 11 10 9 14 14 N 1.31510 * 120.00319 * 168.78669 * 13 11 10 15 15 Si 1.86808 * 119.99816 * 348.78149 * 13 11 10 16 16 H 1.48502 * 109.46991 * 95.73615 * 15 13 11 17 17 H 1.48498 * 109.46976 * 215.73394 * 15 13 11 18 18 H 1.48499 * 109.47112 * 335.73486 * 15 13 11 19 19 C 1.52997 * 117.50273 * 39.14848 * 10 9 8 20 20 C 1.52993 * 117.49741 * 330.48366 * 10 9 8 21 21 C 1.35143 * 125.80225 * 180.32121 * 2 1 3 22 22 C 1.47730 * 126.47490 * 359.97438 * 21 2 1 23 23 C 1.39615 * 120.14895 * 134.84750 * 22 21 2 24 24 C 1.37953 * 119.84851 * 179.71758 * 23 22 21 25 25 C 1.38364 * 120.14616 * 0.53540 * 24 23 22 26 26 C 1.38369 * 120.30413 * 359.76286 * 25 24 23 27 27 C 1.37942 * 120.14758 * 359.95524 * 26 25 24 28 28 H 1.09004 * 109.46982 * 89.97868 * 1 2 3 29 29 H 1.09000 * 109.46663 * 209.97286 * 1 2 3 30 30 H 1.08994 * 109.47114 * 329.97204 * 1 2 3 31 31 H 1.07997 * 125.85499 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.46784 * 304.73334 * 9 8 6 33 33 H 1.08994 * 109.47290 * 64.73278 * 9 8 6 34 34 H 0.97008 * 120.00113 * 180.02562 * 14 13 11 35 35 H 1.08998 * 117.49886 * 359.97438 * 19 10 9 36 36 H 1.08991 * 117.49766 * 145.02452 * 19 10 9 37 37 H 1.09003 * 117.50002 * 214.98065 * 20 10 9 38 38 H 1.08998 * 117.50423 * 359.97438 * 20 10 9 39 39 H 1.08001 * 120.07488 * 359.97438 * 23 22 21 40 40 H 1.07998 * 119.92466 * 180.27380 * 24 23 22 41 41 H 1.07997 * 119.84503 * 179.73819 * 25 24 23 42 42 H 1.07995 * 119.91972 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.07588 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2832 1.1349 0.0000 4 6 3.5336 0.7633 -0.0006 5 6 3.5766 -0.6475 -0.0015 6 6 4.7845 -1.4855 -0.0029 7 8 4.6870 -2.6925 0.1041 8 8 5.9998 -0.9160 -0.1284 9 6 7.1528 -1.7913 -0.0156 10 6 8.4339 -0.9562 -0.0655 11 6 9.7209 -1.7402 -0.0731 12 1 10.5577 -1.3987 -0.6643 13 6 9.8301 -2.8934 0.6746 14 7 10.8595 -3.6936 0.5028 15 14 8.5157 -3.3192 1.9320 16 1 7.5304 -4.2483 1.3227 17 1 9.1478 -3.9696 3.1078 18 1 7.8242 -2.0784 2.3648 19 6 8.4298 0.3881 0.6651 20 6 8.3963 0.3478 -0.8648 21 6 2.2556 -1.0960 -0.0061 22 6 1.8059 -2.5032 -0.0135 23 6 2.4031 -3.4257 -0.8746 24 6 1.9823 -4.7395 -0.8722 25 6 0.9633 -5.1412 -0.0268 26 6 0.3628 -4.2308 0.8247 27 6 0.7778 -2.9153 0.8366 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3633 0.8897 0.5142 31 1 4.3893 1.4222 -0.0003 32 1 7.1078 -2.3313 0.9302 33 1 7.1507 -2.5032 -0.8409 34 1 10.9361 -4.5051 1.0286 35 1 7.5144 0.6778 1.1810 36 1 9.3581 0.7056 1.1398 37 1 9.3027 0.6390 -1.3958 38 1 7.4592 0.6107 -1.3555 39 1 3.1956 -3.1124 -1.5381 40 1 2.4465 -5.4551 -1.5346 41 1 0.6348 -6.1700 -0.0320 42 1 -0.4323 -4.5510 1.4816 43 1 0.3086 -2.2057 1.5021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775252939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:39 Heat of formation + Delta-G solvation = 63.711009 kcal Electronic energy + Delta-G solvation = -27445.838849 eV Core-core repulsion = 23652.652751 eV Total energy + Delta-G solvation = -3793.186098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.65673 -39.58932 -39.02890 -37.03267 -35.16816 -33.88049 -32.39696 -32.24982 -31.11430 -29.36404 -28.04532 -27.18360 -25.22832 -23.63942 -22.92184 -22.33488 -21.34597 -20.86211 -19.74681 -19.11632 -18.05613 -17.08635 -16.74632 -16.38274 -16.16420 -15.65975 -15.56052 -15.13734 -14.72941 -14.57004 -14.28647 -13.89445 -13.79598 -13.51544 -13.23926 -13.04935 -12.90483 -12.79613 -12.64879 -12.51234 -11.80637 -11.60963 -11.31217 -11.10033 -11.03894 -10.73167 -10.45139 -10.38140 -10.11758 -9.97943 -9.67520 -9.48519 -9.22727 -9.15001 -9.08431 -8.67486 -8.53480 -8.31193 -6.23448 -4.18028 0.55710 1.22001 1.57674 2.02166 2.04955 3.18009 3.27156 3.35303 3.36654 3.38699 3.59010 4.05163 4.25324 4.30976 4.58332 4.68867 4.76650 4.76988 4.83217 4.92826 5.04127 5.05556 5.17456 5.23806 5.35117 5.40323 5.59566 5.68638 5.77684 5.82638 5.88353 6.06266 6.13187 6.22604 6.23929 6.29918 6.32455 6.53864 6.57135 6.64543 6.72371 6.79097 7.01193 7.07625 7.26817 7.32869 7.64889 8.24354 8.43489 8.81539 9.39375 10.88514 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.004146 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.710000 B = 6751.362080 C = 8255.434776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.357 5.357 3 N -0.296 5.296 4 C 0.107 3.893 5 C -0.262 4.262 6 C 0.532 3.468 7 O -0.514 6.514 8 O -0.347 6.347 9 C 0.091 3.909 10 C 0.003 3.997 11 C -0.482 4.482 12 H 0.086 0.914 13 C 0.079 3.921 14 N -0.885 5.885 15 Si 0.871 3.129 16 H -0.272 1.272 17 H -0.291 1.291 18 H -0.258 1.258 19 C -0.199 4.199 20 C -0.177 4.177 21 C 0.198 3.802 22 C -0.051 4.051 23 C -0.040 4.040 24 C -0.120 4.120 25 C -0.102 4.102 26 C -0.128 4.128 27 C -0.103 4.103 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.202 0.798 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.268 0.732 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.036 2.810 -1.047 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.135 5.135 3 N -0.115 5.115 4 C -0.079 4.079 5 C -0.275 4.275 6 C 0.377 3.623 7 O -0.404 6.404 8 O -0.263 6.263 9 C 0.018 3.982 10 C 0.002 3.998 11 C -0.519 4.519 12 H 0.104 0.896 13 C -0.125 4.125 14 N -0.521 5.521 15 Si 0.701 3.299 16 H -0.199 1.199 17 H -0.218 1.218 18 H -0.184 1.184 19 C -0.237 4.237 20 C -0.215 4.215 21 C 0.067 3.933 22 C -0.053 4.053 23 C -0.060 4.060 24 C -0.138 4.138 25 C -0.120 4.120 26 C -0.146 4.146 27 C -0.122 4.122 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.219 0.781 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -25.868 3.322 -0.977 26.099 hybrid contribution 0.060 -1.053 0.844 1.351 sum -25.808 2.268 -0.133 25.908 Atomic orbital electron populations 1.22141 0.73493 1.05113 1.04224 1.48535 1.07000 1.02961 1.55037 1.77204 1.02001 1.06631 1.25678 1.24176 0.95107 0.93734 0.94912 1.19330 0.90245 0.93510 1.24394 1.19852 0.83350 0.85988 0.73136 1.90852 1.87513 1.15240 1.46830 1.86497 1.14416 1.43310 1.82063 1.23500 0.80821 0.92180 1.01660 1.19379 0.91857 0.87039 1.01482 1.20306 0.95505 1.07334 1.28747 0.89649 1.24979 0.95653 0.95420 0.96432 1.69894 1.30381 1.12105 1.39687 0.87171 0.81424 0.79117 0.82153 1.19859 1.21846 1.18428 1.23098 1.00807 1.05908 0.93875 1.22732 1.00921 1.04030 0.93770 1.19696 0.89512 0.87959 0.96175 1.17900 0.98530 0.88959 0.99876 1.21205 0.95998 0.92501 0.96258 1.21134 0.97182 0.95728 0.99760 1.21316 0.95813 0.99596 0.95301 1.20975 1.00877 0.92909 0.99796 1.21150 0.96245 0.96720 0.98086 0.90047 0.88859 0.88539 0.78140 0.91840 0.90670 0.92182 0.90945 0.89795 0.90064 0.90179 0.85286 0.85308 0.85725 0.85617 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.23 59.85 0.67 1.30 16 2 N -0.36 -4.24 4.01 -63.75 -0.26 -4.49 16 3 N -0.30 -4.00 12.48 30.83 0.38 -3.61 16 4 C 0.11 1.50 11.85 -17.04 -0.20 1.30 16 5 C -0.26 -4.19 6.12 -104.77 -0.64 -4.83 16 6 C 0.53 10.21 7.72 34.29 0.26 10.48 16 7 O -0.51 -10.81 13.10 -19.32 -0.25 -11.07 16 8 O -0.35 -7.06 8.34 -40.76 -0.34 -7.40 16 9 C 0.09 2.11 4.23 37.16 0.16 2.27 16 10 C 0.00 0.08 1.80 -155.66 -0.28 -0.20 16 11 C -0.48 -13.51 9.57 -34.44 -0.33 -13.84 16 12 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 13 C 0.08 2.27 5.43 -17.82 -0.10 2.17 16 14 N -0.88 -26.60 13.96 55.43 0.77 -25.83 16 15 Si 0.87 22.27 24.25 -169.99 -4.12 18.15 16 16 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.26 -6.45 6.37 56.52 0.36 -6.09 16 19 C -0.20 -4.28 9.66 -26.69 -0.26 -4.54 16 20 C -0.18 -3.69 9.63 -26.70 -0.26 -3.94 16 21 C 0.20 2.75 6.50 -82.06 -0.53 2.22 16 22 C -0.05 -0.65 5.20 -104.99 -0.55 -1.20 16 23 C -0.04 -0.55 7.58 -39.17 -0.30 -0.84 16 24 C -0.12 -1.37 10.03 -39.64 -0.40 -1.77 16 25 C -0.10 -0.97 10.04 -39.49 -0.40 -1.37 16 26 C -0.13 -1.15 10.03 -39.64 -0.40 -1.55 16 27 C -0.10 -1.05 8.52 -39.17 -0.33 -1.39 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.49 5.06 -51.93 -0.26 0.23 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.20 2.39 8.06 -52.49 -0.42 1.97 16 32 H 0.06 1.58 2.56 -51.93 -0.13 1.45 16 33 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 34 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.07 1.46 7.82 -51.93 -0.41 1.05 16 36 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.08 1.52 7.50 -51.93 -0.39 1.13 16 39 H 0.13 1.90 6.99 -52.49 -0.37 1.54 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.97 6.51 -52.48 -0.34 0.63 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -33.52 357.60 -7.60 -41.12 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.30 Total: 3.46 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -3.87 Total: -15.72 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.90 Total: -33.93 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.59 Total: -18.47 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.12 Total: 18.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.52 -7.60 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775252939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.829 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds