Wall clock time and date at job start Tue Mar 31 2020 14:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39906 * 125.78891 * 2 1 4 4 C 1.30443 * 109.23881 * 180.02562 * 3 2 1 5 5 C 1.41151 * 108.29371 * 0.02562 * 4 3 2 6 6 C 1.47014 * 126.49386 * 179.97438 * 5 4 3 7 7 O 1.21566 * 119.99836 * 174.12297 * 6 5 4 8 8 O 1.34797 * 120.00216 * 353.85124 * 6 5 4 9 9 C 1.45201 * 117.00155 * 175.25890 * 8 6 5 10 10 C 1.53003 * 109.46978 * 184.73897 * 9 8 6 11 11 C 1.50704 * 115.54531 * 184.82054 * 10 9 8 12 12 H 1.08004 * 119.99721 * 142.94864 * 11 10 9 13 13 C 1.37871 * 120.00327 * 322.94707 * 11 10 9 14 14 N 1.31510 * 120.00319 * 168.78669 * 13 11 10 15 15 Si 1.86808 * 119.99816 * 348.78149 * 13 11 10 16 16 H 1.48502 * 109.46991 * 95.73615 * 15 13 11 17 17 H 1.48498 * 109.46976 * 215.73394 * 15 13 11 18 18 H 1.48499 * 109.47112 * 335.73486 * 15 13 11 19 19 C 1.52997 * 117.50273 * 39.14848 * 10 9 8 20 20 C 1.52993 * 117.49741 * 330.48366 * 10 9 8 21 21 C 1.35143 * 125.80225 * 180.32121 * 2 1 3 22 22 C 1.47730 * 126.47490 * 359.97438 * 21 2 1 23 23 C 1.39615 * 120.14895 * 134.84750 * 22 21 2 24 24 C 1.37953 * 119.84851 * 179.71758 * 23 22 21 25 25 C 1.38364 * 120.14616 * 0.53540 * 24 23 22 26 26 C 1.38369 * 120.30413 * 359.76286 * 25 24 23 27 27 C 1.37942 * 120.14758 * 359.95524 * 26 25 24 28 28 H 1.09004 * 109.46982 * 89.97868 * 1 2 3 29 29 H 1.09000 * 109.46663 * 209.97286 * 1 2 3 30 30 H 1.08994 * 109.47114 * 329.97204 * 1 2 3 31 31 H 1.07997 * 125.85499 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.46784 * 304.73334 * 9 8 6 33 33 H 1.08994 * 109.47290 * 64.73278 * 9 8 6 34 34 H 0.97008 * 120.00113 * 180.02562 * 14 13 11 35 35 H 1.08998 * 117.49886 * 359.97438 * 19 10 9 36 36 H 1.08991 * 117.49766 * 145.02452 * 19 10 9 37 37 H 1.09003 * 117.50002 * 214.98065 * 20 10 9 38 38 H 1.08998 * 117.50423 * 359.97438 * 20 10 9 39 39 H 1.08001 * 120.07488 * 359.97438 * 23 22 21 40 40 H 1.07998 * 119.92466 * 180.27380 * 24 23 22 41 41 H 1.07997 * 119.84503 * 179.73819 * 25 24 23 42 42 H 1.07995 * 119.91972 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.07588 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2832 1.1349 0.0000 4 6 3.5336 0.7633 -0.0006 5 6 3.5766 -0.6475 -0.0015 6 6 4.7845 -1.4855 -0.0029 7 8 4.6870 -2.6925 0.1041 8 8 5.9998 -0.9160 -0.1284 9 6 7.1528 -1.7913 -0.0156 10 6 8.4339 -0.9562 -0.0655 11 6 9.7209 -1.7402 -0.0731 12 1 10.5577 -1.3987 -0.6643 13 6 9.8301 -2.8934 0.6746 14 7 10.8595 -3.6936 0.5028 15 14 8.5157 -3.3192 1.9320 16 1 7.5304 -4.2483 1.3227 17 1 9.1478 -3.9696 3.1078 18 1 7.8242 -2.0784 2.3648 19 6 8.4298 0.3881 0.6651 20 6 8.3963 0.3478 -0.8648 21 6 2.2556 -1.0960 -0.0061 22 6 1.8059 -2.5032 -0.0135 23 6 2.4031 -3.4257 -0.8746 24 6 1.9823 -4.7395 -0.8722 25 6 0.9633 -5.1412 -0.0268 26 6 0.3628 -4.2308 0.8247 27 6 0.7778 -2.9153 0.8366 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3633 0.8897 0.5142 31 1 4.3893 1.4222 -0.0003 32 1 7.1078 -2.3313 0.9302 33 1 7.1507 -2.5032 -0.8409 34 1 10.9361 -4.5051 1.0286 35 1 7.5144 0.6778 1.1810 36 1 9.3581 0.7056 1.1398 37 1 9.3027 0.6390 -1.3958 38 1 7.4592 0.6107 -1.3555 39 1 3.1956 -3.1124 -1.5381 40 1 2.4465 -5.4551 -1.5346 41 1 0.6348 -6.1700 -0.0320 42 1 -0.4323 -4.5510 1.4816 43 1 0.3086 -2.2057 1.5021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775252939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:38 Heat of formation + Delta-G solvation = 44.362096 kcal Electronic energy + Delta-G solvation = -27446.677881 eV Core-core repulsion = 23652.652751 eV Total energy + Delta-G solvation = -3794.025130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.69319 -41.12866 -39.84983 -38.76311 -36.82158 -34.76058 -34.41604 -33.31718 -31.91610 -30.46319 -29.52435 -28.36264 -27.10443 -24.71498 -23.77217 -23.43015 -23.06864 -21.93053 -21.08475 -20.84445 -19.27059 -18.73058 -18.18822 -17.66688 -17.27673 -17.00295 -16.77450 -16.52373 -15.97532 -15.73753 -15.38479 -15.22128 -15.08893 -14.69934 -14.56944 -14.47670 -14.18867 -13.84394 -13.60158 -13.57431 -13.41036 -13.04500 -12.70949 -12.53393 -12.40138 -12.13237 -12.05990 -12.04044 -11.72149 -11.51089 -11.39743 -11.14839 -10.90891 -10.65308 -10.28744 -10.09353 -9.91716 -9.50848 -8.45224 -6.41394 -0.39976 0.40412 0.58255 0.90336 1.13574 1.21952 1.26403 1.31879 1.75827 2.03915 2.18062 2.75575 2.75792 3.17142 3.34017 3.41252 3.73431 3.85487 3.90409 3.97011 4.03410 4.05224 4.17427 4.19811 4.30287 4.35735 4.42689 4.46419 4.49851 4.56879 4.63568 4.77479 4.85616 4.96998 5.02876 5.05244 5.20637 5.24556 5.37041 5.38669 5.46810 5.51959 5.57436 5.59683 5.67074 5.94454 6.20406 6.30613 6.58739 6.76009 7.17954 8.71119 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.004146 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.710000 B = 6751.362080 C = 8255.434776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.346 5.346 3 N -0.304 5.304 4 C 0.109 3.891 5 C -0.297 4.297 6 C 0.530 3.470 7 O -0.539 6.539 8 O -0.341 6.341 9 C 0.102 3.898 10 C -0.034 4.034 11 C -0.485 4.485 12 H 0.053 0.947 13 C 0.034 3.966 14 N -0.929 5.929 15 Si 0.926 3.074 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.248 1.248 19 C -0.182 4.182 20 C -0.154 4.154 21 C 0.208 3.792 22 C -0.073 4.073 23 C -0.067 4.067 24 C -0.136 4.136 25 C -0.098 4.098 26 C -0.121 4.121 27 C -0.100 4.100 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.217 0.783 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.271 0.729 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.134 0.866 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.061 3.701 0.223 29.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.123 5.123 3 N -0.123 5.123 4 C -0.077 4.077 5 C -0.310 4.310 6 C 0.376 3.624 7 O -0.431 6.431 8 O -0.258 6.258 9 C 0.029 3.971 10 C -0.034 4.034 11 C -0.522 4.522 12 H 0.071 0.929 13 C -0.166 4.166 14 N -0.567 5.567 15 Si 0.755 3.245 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.173 1.173 19 C -0.219 4.219 20 C -0.191 4.191 21 C 0.074 3.926 22 C -0.075 4.075 23 C -0.086 4.086 24 C -0.154 4.154 25 C -0.116 4.116 26 C -0.139 4.139 27 C -0.118 4.118 28 H 0.115 0.885 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.233 0.767 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.180 0.820 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -29.932 4.260 0.290 30.235 hybrid contribution 1.163 -1.322 0.355 1.796 sum -28.769 2.938 0.644 28.926 Atomic orbital electron populations 1.22623 0.70526 1.07038 1.05912 1.48934 1.08488 1.01879 1.53033 1.77173 1.01895 1.07361 1.25858 1.24396 0.95897 0.93014 0.94439 1.19259 0.89715 0.94161 1.27887 1.20394 0.83478 0.86200 0.72287 1.90837 1.87618 1.16427 1.48217 1.86474 1.14337 1.42379 1.82561 1.23017 0.81945 0.92006 1.00156 1.19259 0.90546 0.88038 1.05602 1.20472 0.96488 1.07690 1.27579 0.92871 1.25587 0.97331 0.95563 0.98072 1.69991 1.32426 1.13037 1.41293 0.86279 0.79034 0.79060 0.80152 1.20653 1.21286 1.17289 1.23085 1.01748 1.02503 0.94582 1.22793 1.02185 1.00462 0.93703 1.19864 0.89173 0.88989 0.94623 1.18021 1.00016 0.88317 1.01135 1.21128 0.96394 0.93914 0.97177 1.21329 0.98207 0.95053 1.00784 1.21703 0.94555 1.01241 0.94147 1.21436 1.00977 0.92125 0.99362 1.21464 0.95083 0.97944 0.97343 0.88477 0.86868 0.86695 0.76656 0.93379 0.92248 0.91939 0.88923 0.89876 0.89873 0.87863 0.88090 0.84786 0.82858 0.81989 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 11.23 127.77 1.43 2.23 16 2 N -0.35 -7.40 4.01 -355.60 -1.42 -8.82 16 3 N -0.30 -7.57 12.48 -56.37 -0.70 -8.27 16 4 C 0.11 2.90 11.85 85.61 1.01 3.91 16 5 C -0.30 -9.35 6.12 -19.96 -0.12 -9.47 16 6 C 0.53 20.50 7.72 70.12 0.54 21.04 16 7 O -0.54 -23.30 13.10 19.62 0.26 -23.04 16 8 O -0.34 -13.79 8.34 -57.09 -0.48 -14.27 16 9 C 0.10 4.79 4.23 71.98 0.30 5.10 16 10 C -0.03 -1.61 1.80 -52.93 -0.10 -1.71 16 11 C -0.48 -27.94 9.57 25.60 0.24 -27.69 16 12 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 13 C 0.03 2.03 5.43 84.65 0.46 2.48 16 14 N -0.93 -57.78 13.96 21.44 0.30 -57.48 16 15 Si 0.93 47.14 24.25 68.60 1.66 48.80 16 16 H -0.28 -14.43 7.11 99.48 0.71 -13.73 16 17 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 18 H -0.25 -12.04 6.37 99.48 0.63 -11.40 16 19 C -0.18 -7.50 9.66 30.62 0.30 -7.21 16 20 C -0.15 -6.21 9.63 30.62 0.29 -5.91 16 21 C 0.21 5.52 6.50 41.45 0.27 5.79 16 22 C -0.07 -1.79 5.20 -20.10 -0.10 -1.90 16 23 C -0.07 -1.83 7.58 22.53 0.17 -1.66 16 24 C -0.14 -3.02 10.03 22.23 0.22 -2.80 16 25 C -0.10 -1.60 10.04 22.33 0.22 -1.38 16 26 C -0.12 -1.71 10.03 22.23 0.22 -1.49 16 27 C -0.10 -1.71 8.52 22.53 0.19 -1.52 16 28 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.11 0.72 5.06 -2.39 -0.01 0.71 16 30 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.22 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.05 2.41 2.56 -2.38 -0.01 2.41 16 33 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 35 H 0.09 3.47 7.82 -2.39 -0.02 3.45 16 36 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.10 3.68 7.50 -2.39 -0.02 3.66 16 39 H 0.10 3.23 6.99 -2.91 -0.02 3.21 16 40 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 41 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 43 H 0.15 1.69 6.51 -2.91 -0.02 1.67 16 Total: -1.00 -75.40 357.60 6.15 -69.25 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.97 Total: 16.03 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 5.57 Total: -22.19 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -1.83 Total: -74.58 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.22 Total: -37.31 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.66 Total: 48.80 kcal Total: -75.40 6.15 -69.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775252939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.608 kcal (2) G-P(sol) polarization free energy of solvation -75.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds