Wall clock time and date at job start Tue Mar 31 2020 14:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28464 * 124.87917 * 2 1 4 4 C 1.31861 * 110.06369 * 180.15551 * 3 2 1 5 5 C 1.47574 * 126.52487 * 179.88368 * 4 3 2 6 6 O 1.21493 * 119.99826 * 179.68727 * 5 4 3 7 7 O 1.34728 * 120.00198 * 359.68166 * 5 4 3 8 8 C 1.45208 * 117.00109 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47113 * 179.97438 * 8 7 5 10 10 C 1.38635 * 119.74938 * 270.25624 * 9 8 7 11 11 C 1.37619 * 120.24352 * 180.25874 * 10 9 8 12 12 C 1.40711 * 119.74798 * 359.46791 * 11 10 9 13 13 C 1.41396 * 120.24787 * 180.29782 * 12 11 10 14 14 H 1.08005 * 119.99505 * 335.28837 * 13 12 11 15 15 C 1.39942 * 120.00083 * 155.28075 * 13 12 11 16 16 N 1.30817 * 120.00502 * 342.23482 * 15 13 12 17 17 Si 1.86807 * 119.99811 * 162.22853 * 15 13 12 18 18 H 1.48505 * 109.46906 * 94.66663 * 17 15 13 19 19 H 1.48499 * 109.47220 * 214.66572 * 17 15 13 20 20 H 1.48500 * 109.47278 * 334.66810 * 17 15 13 21 21 C 1.40719 * 119.50966 * 0.27391 * 12 11 10 22 22 C 1.37612 * 119.74521 * 0.02562 * 21 12 11 23 23 C 1.41543 * 106.94633 * 359.61716 * 4 3 2 24 24 C 1.35048 * 124.87781 * 179.72529 * 2 1 3 25 25 C 1.50701 * 126.38090 * 359.97438 * 24 2 1 26 26 C 1.52997 * 117.50016 * 213.74636 * 25 24 2 27 27 C 1.52998 * 117.49585 * 145.08455 * 25 24 2 28 28 H 1.09004 * 109.46928 * 270.27653 * 1 2 3 29 29 H 1.08997 * 109.46971 * 30.26791 * 1 2 3 30 30 H 1.08996 * 109.47014 * 150.27845 * 1 2 3 31 31 H 1.09003 * 109.46654 * 60.00246 * 8 7 5 32 32 H 1.08997 * 109.47205 * 300.00552 * 8 7 5 33 33 H 1.07995 * 119.87697 * 0.02562 * 10 9 8 34 34 H 1.07999 * 120.12174 * 179.73950 * 11 10 9 35 35 H 0.97001 * 120.00527 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.12678 * 180.02562 * 21 12 11 37 37 H 1.08006 * 119.87565 * 179.97438 * 22 21 12 38 38 H 1.08011 * 127.24658 * 180.23099 * 23 4 3 39 39 H 1.09003 * 115.54991 * 359.42212 * 25 24 2 40 40 H 1.09000 * 117.49871 * 0.02562 * 26 25 24 41 41 H 1.09004 * 117.49581 * 145.02175 * 26 25 24 42 42 H 1.09000 * 117.49607 * 214.98143 * 27 25 24 43 43 H 1.08995 * 117.50269 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1996 1.0539 0.0000 4 6 3.4744 0.7167 -0.0034 5 6 4.6268 1.6386 -0.0069 6 8 5.7584 1.1964 -0.0041 7 8 4.4240 2.9705 -0.0134 8 6 5.6038 3.8170 -0.0171 9 6 5.1836 5.2642 -0.0248 10 6 4.9873 5.9171 -1.2320 11 6 4.6088 7.2401 -1.2509 12 6 4.4101 7.9269 -0.0390 13 6 4.0151 9.2845 -0.0461 14 1 4.2401 9.9079 -0.8990 15 6 3.3324 9.8204 1.0517 16 7 2.7561 9.0249 1.9156 17 14 3.2442 11.6719 1.2836 18 1 1.9836 12.1856 0.6902 19 1 3.2749 11.9912 2.7336 20 1 4.4041 12.3108 0.6115 21 6 4.6071 7.2525 1.1803 22 6 4.9916 5.9312 1.1753 23 6 3.5271 -0.6977 0.0034 24 6 2.2373 -1.1079 0.0053 25 6 1.7531 -2.5350 0.0127 26 6 2.5950 -3.5627 0.7715 27 6 2.5797 -3.5654 -0.7592 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3633 -0.8924 -0.5095 31 1 6.1987 3.6070 -0.9060 32 1 6.1983 3.6155 0.8739 33 1 5.1357 5.3866 -2.1609 34 1 4.4605 7.7480 -2.1925 35 1 2.2833 9.3963 2.6767 36 1 4.4570 7.7699 2.1163 37 1 5.1438 5.4116 2.1098 38 1 4.4106 -1.3190 0.0064 39 1 0.6708 -2.6642 0.0237 40 1 3.4989 -3.2066 1.2657 41 1 2.0666 -4.3683 1.2814 42 1 2.0413 -4.3727 -1.2556 43 1 3.4734 -3.2111 -1.2727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776113314.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:45 Heat of formation + Delta-G solvation = 36.597137 kcal Electronic energy + Delta-G solvation = -25724.632098 eV Core-core repulsion = 21930.270254 eV Total energy + Delta-G solvation = -3794.361844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.87247 -39.71699 -37.63642 -37.57195 -35.91102 -33.83439 -33.67642 -30.83162 -30.52872 -29.31269 -28.09325 -26.96072 -24.45297 -23.65966 -22.93866 -22.79790 -21.02769 -20.70535 -20.00827 -19.70409 -17.73206 -17.34260 -16.89938 -16.54844 -16.02219 -15.68492 -15.38900 -15.25908 -14.66868 -14.29627 -14.03819 -13.75831 -13.70509 -13.10629 -12.92303 -12.72038 -12.30082 -12.26208 -12.21603 -11.97465 -11.96458 -11.69347 -11.41931 -11.19467 -11.13036 -10.94828 -10.83529 -10.71340 -10.44298 -10.34226 -10.05858 -9.64806 -9.42065 -9.25461 -9.17330 -8.95674 -7.50158 -7.39274 -6.81911 -4.41436 1.44223 1.78994 2.19288 2.54319 2.98654 3.04399 3.07313 3.10711 3.32840 3.43264 3.53519 3.89075 4.00053 4.18753 4.44069 4.54136 4.55082 4.61060 4.80757 4.90380 5.09754 5.14044 5.22929 5.41118 5.46473 5.52495 5.67985 5.70199 5.74530 5.77036 5.80086 6.09570 6.25483 6.32183 6.37816 6.55168 6.86547 6.92904 7.02147 7.24188 7.32178 7.57463 7.73797 7.80488 8.00807 8.07312 8.20715 8.24594 8.59030 8.83501 8.92256 10.11973 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.002226 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.245911 B =12577.215876 C =13352.468332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.278 5.278 3 N -0.224 5.224 4 C 0.002 3.998 5 C 0.548 3.452 6 O -0.513 6.513 7 O -0.333 6.333 8 C 0.135 3.865 9 C -0.233 4.233 10 C -0.063 4.063 11 C -0.230 4.230 12 C 0.119 3.881 13 C -0.457 4.457 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.785 5.785 17 Si 0.909 3.091 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.171 4.171 22 C -0.074 4.074 23 C -0.175 4.175 24 C 0.041 3.959 25 C -0.097 4.097 26 C -0.162 4.162 27 C -0.162 4.162 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.282 0.718 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.162 0.838 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 -21.363 -1.454 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.067 5.067 3 N -0.061 5.061 4 C -0.156 4.156 5 C 0.391 3.609 6 O -0.401 6.401 7 O -0.248 6.248 8 C 0.063 3.937 9 C -0.234 4.234 10 C -0.081 4.081 11 C -0.250 4.250 12 C 0.116 3.884 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.410 5.410 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.190 4.190 22 C -0.093 4.093 23 C -0.203 4.203 24 C -0.082 4.082 25 C -0.117 4.117 26 C -0.199 4.199 27 C -0.200 4.200 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.107 0.893 38 H 0.180 0.820 39 H 0.135 0.865 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.184 -20.465 -1.237 21.414 hybrid contribution 0.268 0.183 0.202 0.383 sum -5.916 -20.281 -1.035 21.152 Atomic orbital electron populations 1.22209 0.73119 1.05570 1.04712 1.45410 1.07902 1.02487 1.50886 1.73883 1.02957 1.12471 1.16761 1.20881 0.90027 0.92426 1.12246 1.19629 0.86338 0.82206 0.72741 1.90807 1.23426 1.78753 1.47110 1.86876 1.40365 1.15507 1.82099 1.21806 0.83899 0.86991 1.01027 1.18684 1.18896 0.91712 0.94135 1.20399 0.97803 0.94704 0.95210 1.20954 1.12518 0.94355 0.97129 1.17683 0.87016 0.92756 0.90955 1.19657 1.31401 0.95380 1.02116 0.90209 1.25968 0.93068 1.00623 0.94746 1.69834 1.22888 1.37425 1.10862 0.86289 0.79680 0.82282 0.78448 1.19504 1.19959 1.18328 1.21279 1.05000 0.93964 0.98757 1.20544 0.98453 0.95138 0.95143 1.21340 0.96604 0.92877 1.09431 1.20420 0.90432 0.89213 1.08164 1.20271 0.98225 0.84966 1.08252 1.23119 1.02031 1.00040 0.94732 1.23122 1.02198 1.00036 0.94639 0.89458 0.88022 0.88692 0.91916 0.91849 0.89270 0.88735 0.90698 0.86289 0.89294 0.82041 0.86536 0.87894 0.87948 0.87961 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 11.05 59.85 0.66 1.24 16 2 N -0.28 -3.34 3.70 -63.85 -0.24 -3.58 16 3 N -0.22 -3.68 11.99 33.41 0.40 -3.28 16 4 C 0.00 0.03 7.17 -82.79 -0.59 -0.56 16 5 C 0.55 10.55 7.97 34.54 0.28 10.82 16 6 O -0.51 -10.23 16.72 -19.26 -0.32 -10.56 16 7 O -0.33 -7.05 10.21 -40.57 -0.41 -7.47 16 8 C 0.13 2.76 5.59 36.01 0.20 2.96 16 9 C -0.23 -5.42 5.54 -104.33 -0.58 -5.99 16 10 C -0.06 -1.47 9.67 -39.66 -0.38 -1.85 16 11 C -0.23 -5.76 9.80 -38.87 -0.38 -6.14 16 12 C 0.12 3.20 5.57 -106.82 -0.60 2.60 16 13 C -0.46 -12.10 9.05 -37.74 -0.34 -12.44 16 14 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 15 C 0.07 1.87 5.14 -17.35 -0.09 1.78 16 16 N -0.79 -20.33 10.97 55.55 0.61 -19.72 16 17 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 21 C -0.17 -4.51 8.70 -38.87 -0.34 -4.85 16 22 C -0.07 -1.80 9.67 -39.66 -0.38 -2.19 16 23 C -0.18 -2.33 9.85 -39.35 -0.39 -2.72 16 24 C 0.04 0.45 6.60 -82.21 -0.54 -0.10 16 25 C -0.10 -0.68 5.93 -91.77 -0.54 -1.22 16 26 C -0.16 -0.95 10.05 -26.69 -0.27 -1.22 16 27 C -0.16 -0.95 10.06 -26.69 -0.27 -1.22 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.35 7.13 -51.93 -0.37 -0.02 16 31 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 32 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 33 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 34 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 36 H 0.12 3.21 6.18 -52.48 -0.32 2.89 16 37 H 0.09 1.98 8.06 -52.48 -0.42 1.55 16 38 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.12 0.56 7.18 -51.93 -0.37 0.18 16 40 H 0.10 0.69 7.94 -51.93 -0.41 0.28 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.68 7.97 -51.93 -0.41 0.27 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -32.29 375.45 -9.56 -41.84 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.66 Total: 4.74 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -4.56 Total: -21.10 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.77 Total: -26.57 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.74 Total: -18.02 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.29 -9.56 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776113314.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.441 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds