Wall clock time and date at job start Tue Mar 31 2020 14:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28464 * 124.87917 * 2 1 4 4 C 1.31861 * 110.06369 * 180.15551 * 3 2 1 5 5 C 1.47574 * 126.52487 * 179.88368 * 4 3 2 6 6 O 1.21493 * 119.99826 * 179.68727 * 5 4 3 7 7 O 1.34728 * 120.00198 * 359.68166 * 5 4 3 8 8 C 1.45208 * 117.00109 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47113 * 179.97438 * 8 7 5 10 10 C 1.38635 * 119.74938 * 270.25624 * 9 8 7 11 11 C 1.37619 * 120.24352 * 180.25874 * 10 9 8 12 12 C 1.40711 * 119.74798 * 359.46791 * 11 10 9 13 13 C 1.41396 * 120.24787 * 180.29782 * 12 11 10 14 14 H 1.08005 * 119.99505 * 335.28837 * 13 12 11 15 15 C 1.39942 * 120.00083 * 155.28075 * 13 12 11 16 16 N 1.30817 * 120.00502 * 342.23482 * 15 13 12 17 17 Si 1.86807 * 119.99811 * 162.22853 * 15 13 12 18 18 H 1.48505 * 109.46906 * 94.66663 * 17 15 13 19 19 H 1.48499 * 109.47220 * 214.66572 * 17 15 13 20 20 H 1.48500 * 109.47278 * 334.66810 * 17 15 13 21 21 C 1.40719 * 119.50966 * 0.27391 * 12 11 10 22 22 C 1.37612 * 119.74521 * 0.02562 * 21 12 11 23 23 C 1.41543 * 106.94633 * 359.61716 * 4 3 2 24 24 C 1.35048 * 124.87781 * 179.72529 * 2 1 3 25 25 C 1.50701 * 126.38090 * 359.97438 * 24 2 1 26 26 C 1.52997 * 117.50016 * 213.74636 * 25 24 2 27 27 C 1.52998 * 117.49585 * 145.08455 * 25 24 2 28 28 H 1.09004 * 109.46928 * 270.27653 * 1 2 3 29 29 H 1.08997 * 109.46971 * 30.26791 * 1 2 3 30 30 H 1.08996 * 109.47014 * 150.27845 * 1 2 3 31 31 H 1.09003 * 109.46654 * 60.00246 * 8 7 5 32 32 H 1.08997 * 109.47205 * 300.00552 * 8 7 5 33 33 H 1.07995 * 119.87697 * 0.02562 * 10 9 8 34 34 H 1.07999 * 120.12174 * 179.73950 * 11 10 9 35 35 H 0.97001 * 120.00527 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.12678 * 180.02562 * 21 12 11 37 37 H 1.08006 * 119.87565 * 179.97438 * 22 21 12 38 38 H 1.08011 * 127.24658 * 180.23099 * 23 4 3 39 39 H 1.09003 * 115.54991 * 359.42212 * 25 24 2 40 40 H 1.09000 * 117.49871 * 0.02562 * 26 25 24 41 41 H 1.09004 * 117.49581 * 145.02175 * 26 25 24 42 42 H 1.09000 * 117.49607 * 214.98143 * 27 25 24 43 43 H 1.08995 * 117.50269 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1996 1.0539 0.0000 4 6 3.4744 0.7167 -0.0034 5 6 4.6268 1.6386 -0.0069 6 8 5.7584 1.1964 -0.0041 7 8 4.4240 2.9705 -0.0134 8 6 5.6038 3.8170 -0.0171 9 6 5.1836 5.2642 -0.0248 10 6 4.9873 5.9171 -1.2320 11 6 4.6088 7.2401 -1.2509 12 6 4.4101 7.9269 -0.0390 13 6 4.0151 9.2845 -0.0461 14 1 4.2401 9.9079 -0.8990 15 6 3.3324 9.8204 1.0517 16 7 2.7561 9.0249 1.9156 17 14 3.2442 11.6719 1.2836 18 1 1.9836 12.1856 0.6902 19 1 3.2749 11.9912 2.7336 20 1 4.4041 12.3108 0.6115 21 6 4.6071 7.2525 1.1803 22 6 4.9916 5.9312 1.1753 23 6 3.5271 -0.6977 0.0034 24 6 2.2373 -1.1079 0.0053 25 6 1.7531 -2.5350 0.0127 26 6 2.5950 -3.5627 0.7715 27 6 2.5797 -3.5654 -0.7592 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3633 -0.8924 -0.5095 31 1 6.1987 3.6070 -0.9060 32 1 6.1983 3.6155 0.8739 33 1 5.1357 5.3866 -2.1609 34 1 4.4605 7.7480 -2.1925 35 1 2.2833 9.3963 2.6767 36 1 4.4570 7.7699 2.1163 37 1 5.1438 5.4116 2.1098 38 1 4.4106 -1.3190 0.0064 39 1 0.6708 -2.6642 0.0237 40 1 3.4989 -3.2066 1.2657 41 1 2.0666 -4.3683 1.2814 42 1 2.0413 -4.3727 -1.2556 43 1 3.4734 -3.2111 -1.2727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776113314.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:44 Heat of formation + Delta-G solvation = 20.256976 kcal Electronic energy + Delta-G solvation = -25725.340660 eV Core-core repulsion = 21930.270254 eV Total energy + Delta-G solvation = -3795.070406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.86989 -41.26584 -39.48546 -38.14041 -37.52403 -35.70375 -34.61635 -32.62790 -31.53277 -31.25789 -29.40021 -28.39445 -25.92216 -24.75550 -24.09912 -23.21210 -22.97722 -21.92209 -21.76809 -20.80174 -19.28966 -18.62682 -18.29336 -17.72099 -17.42237 -17.12983 -16.91723 -16.08834 -15.86171 -15.64024 -15.47472 -15.28954 -14.82312 -14.47047 -14.10665 -14.00576 -13.87371 -13.63380 -13.55486 -13.46609 -12.88454 -12.85946 -12.70547 -12.64070 -12.38183 -12.15541 -12.06537 -12.03883 -11.93282 -11.72481 -11.50534 -11.32711 -11.31415 -11.05799 -10.26025 -9.84469 -9.46365 -9.35971 -8.70122 -6.41402 0.17584 0.68202 0.87479 1.08747 1.31908 1.38099 1.47815 1.54097 1.94292 1.99710 2.18824 2.69718 3.03702 3.21005 3.39858 3.65953 3.84422 3.98736 4.05114 4.08410 4.09277 4.09870 4.30293 4.33502 4.36807 4.45379 4.52191 4.54721 4.62184 4.65483 4.84842 4.97667 5.03433 5.10125 5.14390 5.19763 5.27438 5.29656 5.33378 5.38065 5.63010 5.72743 5.85485 6.03312 6.12168 6.29292 6.52966 6.61903 6.86180 6.86446 6.94986 8.26907 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.002226 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.245911 B =12577.215876 C =13352.468332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.270 5.270 3 N -0.263 5.263 4 C -0.033 4.033 5 C 0.548 3.452 6 O -0.528 6.528 7 O -0.352 6.352 8 C 0.138 3.862 9 C -0.231 4.231 10 C -0.065 4.065 11 C -0.245 4.245 12 C 0.088 3.912 13 C -0.491 4.491 14 H 0.082 0.918 15 C 0.033 3.967 16 N -0.819 5.819 17 Si 0.987 3.013 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.257 1.257 21 C -0.194 4.194 22 C -0.080 4.080 23 C -0.189 4.189 24 C 0.060 3.940 25 C -0.107 4.107 26 C -0.158 4.158 27 C -0.156 4.156 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.291 0.709 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.170 0.830 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 -23.430 -1.688 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.059 5.059 3 N -0.102 5.102 4 C -0.188 4.188 5 C 0.392 3.608 6 O -0.416 6.416 7 O -0.268 6.268 8 C 0.066 3.934 9 C -0.233 4.233 10 C -0.083 4.083 11 C -0.264 4.264 12 C 0.085 3.915 13 C -0.520 4.520 14 H 0.100 0.900 15 C -0.183 4.183 16 N -0.444 5.444 17 Si 0.807 3.193 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.180 1.180 21 C -0.213 4.213 22 C -0.099 4.099 23 C -0.216 4.216 24 C -0.064 4.064 25 C -0.127 4.127 26 C -0.195 4.195 27 C -0.194 4.194 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.152 0.848 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.188 0.812 39 H 0.165 0.835 40 H 0.108 0.892 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.644 -22.549 -1.479 23.855 hybrid contribution 0.650 0.602 0.259 0.923 sum -6.994 -21.947 -1.220 23.066 Atomic orbital electron populations 1.22713 0.70251 1.07458 1.06449 1.45894 1.09449 1.01863 1.48707 1.73789 1.03194 1.14737 1.18433 1.20794 0.89748 0.93297 1.15010 1.19999 0.87177 0.81566 0.72024 1.90775 1.24168 1.78684 1.48019 1.86830 1.40428 1.16818 1.82684 1.21711 0.83923 0.85461 1.02274 1.18980 1.17344 0.93250 0.93675 1.20715 0.96813 0.94272 0.96516 1.21173 1.12970 0.95202 0.97054 1.18055 0.87941 0.93664 0.91791 1.19930 1.32902 0.95718 1.03425 0.90030 1.26883 0.91914 1.05695 0.93801 1.69885 1.23301 1.39757 1.11476 0.85126 0.79857 0.75589 0.78742 1.18549 1.18939 1.18034 1.21257 1.06809 0.94964 0.98262 1.20773 0.97960 0.94627 0.96498 1.21533 0.98313 0.91395 1.10378 1.20986 0.89468 0.90782 1.05182 1.20539 1.00043 0.82378 1.09703 1.23207 1.01452 0.99881 0.94974 1.23210 1.01634 0.99832 0.94724 0.87732 0.88319 0.84757 0.90409 0.90933 0.86538 0.87722 0.89846 0.87685 0.87742 0.81218 0.83466 0.89173 0.85664 0.85605 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 11.05 127.77 1.41 2.18 16 2 N -0.27 -6.09 3.70 -355.93 -1.32 -7.41 16 3 N -0.26 -8.66 11.99 -48.22 -0.58 -9.24 16 4 C -0.03 -1.14 7.17 42.42 0.30 -0.83 16 5 C 0.55 21.52 7.97 70.29 0.56 22.08 16 6 O -0.53 -21.33 16.72 19.86 0.33 -21.00 16 7 O -0.35 -15.12 10.21 -56.38 -0.58 -15.69 16 8 C 0.14 5.66 5.59 71.24 0.40 6.05 16 9 C -0.23 -10.83 5.54 -19.67 -0.11 -10.94 16 10 C -0.06 -3.05 9.67 22.22 0.21 -2.83 16 11 C -0.24 -12.51 9.80 22.73 0.22 -12.29 16 12 C 0.09 4.92 5.57 -21.29 -0.12 4.80 16 13 C -0.49 -26.81 9.05 23.46 0.21 -26.60 16 14 H 0.08 4.24 7.91 -2.91 -0.02 4.22 16 15 C 0.03 1.67 5.14 85.26 0.44 2.11 16 16 N -0.82 -43.48 10.97 21.82 0.24 -43.24 16 17 Si 0.99 38.11 29.59 68.60 2.03 40.14 16 18 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 19 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 21 C -0.19 -10.64 8.70 22.73 0.20 -10.44 16 22 C -0.08 -3.99 9.67 22.22 0.21 -3.78 16 23 C -0.19 -4.95 9.85 22.42 0.22 -4.73 16 24 C 0.06 1.20 6.60 41.40 0.27 1.48 16 25 C -0.11 -1.11 5.93 -11.54 -0.07 -1.18 16 26 C -0.16 -1.37 10.05 30.62 0.31 -1.06 16 27 C -0.16 -1.33 10.06 30.62 0.31 -1.02 16 28 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.13 0.42 7.13 -2.39 -0.02 0.41 16 31 H 0.08 2.92 8.08 -2.39 -0.02 2.90 16 32 H 0.07 2.80 8.08 -2.39 -0.02 2.78 16 33 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 35 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 36 H 0.11 5.96 6.18 -2.91 -0.02 5.94 16 37 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.17 3.94 8.06 -2.90 -0.02 3.92 16 39 H 0.15 0.64 7.18 -2.39 -0.02 0.63 16 40 H 0.09 1.04 7.94 -2.39 -0.02 1.02 16 41 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.09 1.02 7.97 -2.39 -0.02 1.00 16 Total: -1.00 -73.20 375.45 6.15 -67.06 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 1.03 Total: 26.37 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 4.99 Total: -37.00 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -1.65 Total: -59.88 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.24 Total: -36.69 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -73.20 6.15 -67.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776113314.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.312 kcal (2) G-P(sol) polarization free energy of solvation -73.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds