Wall clock time and date at job start Tue Mar 31 2020 14:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00121 * 2 1 4 4 C 1.38431 * 119.99803 * 180.02562 * 2 1 3 5 5 C 1.39412 * 119.53487 * 4.99310 * 4 2 1 6 6 C 1.36834 * 119.38226 * 180.02562 * 5 4 2 7 7 C 1.40404 * 118.49259 * 359.97438 * 6 5 4 8 8 C 1.47404 * 120.48447 * 180.02562 * 7 6 5 9 9 O 1.21513 * 119.99792 * 359.97438 * 8 7 6 10 10 O 1.34753 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.45196 * 117.00006 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47539 * 179.97438 * 11 10 8 13 13 C 1.38632 * 119.75049 * 269.73381 * 12 11 10 14 14 C 1.37618 * 120.25044 * 179.72211 * 13 12 11 15 15 C 1.40718 * 119.74315 * 0.55734 * 14 13 12 16 16 C 1.41391 * 120.24453 * 179.68302 * 15 14 13 17 17 H 1.08007 * 120.00039 * 155.31501 * 16 15 14 18 18 C 1.39944 * 120.00596 * 335.32097 * 16 15 14 19 19 N 1.30832 * 119.99350 * 342.23197 * 18 16 15 20 20 Si 1.86797 * 120.00577 * 162.22859 * 18 16 15 21 21 H 1.48497 * 109.47172 * 94.66405 * 20 18 16 22 22 H 1.48494 * 109.47221 * 214.66704 * 20 18 16 23 23 H 1.48502 * 109.46769 * 334.66488 * 20 18 16 24 24 C 1.40720 * 119.51163 * 359.71701 * 15 14 13 25 25 C 1.37617 * 119.74069 * 359.97438 * 24 15 14 26 26 C 1.39621 * 119.03427 * 0.02562 * 7 6 5 27 27 N 1.31660 * 120.51519 * 0.02562 * 26 7 6 28 28 H 1.09002 * 109.46557 * 269.99941 * 1 2 3 29 29 H 1.08997 * 109.47251 * 30.00193 * 1 2 3 30 30 H 1.09003 * 109.47025 * 150.00076 * 1 2 3 31 31 H 1.09010 * 109.46999 * 270.00239 * 3 2 1 32 32 H 1.09002 * 109.47046 * 29.99973 * 3 2 1 33 33 H 1.08994 * 109.47313 * 150.00342 * 3 2 1 34 34 H 1.07998 * 120.30778 * 0.03148 * 5 4 2 35 35 H 1.08002 * 120.75293 * 180.02562 * 6 5 4 36 36 H 1.09005 * 109.47570 * 300.00116 * 11 10 8 37 37 H 1.09000 * 109.47184 * 59.99711 * 11 10 8 38 38 H 1.08003 * 119.87480 * 359.97095 * 13 12 11 39 39 H 1.08000 * 120.13078 * 180.28094 * 14 13 12 40 40 H 0.97003 * 119.99438 * 180.02562 * 19 18 16 41 41 H 1.07995 * 120.13007 * 179.97438 * 24 15 14 42 42 H 1.08006 * 119.87281 * 180.02562 * 25 24 15 43 43 H 1.08005 * 119.74310 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1571 -1.1989 -0.0005 5 6 1.4542 -2.3981 -0.1066 6 6 2.1415 -3.5814 -0.1063 7 6 3.5409 -3.5432 0.0012 8 6 4.3249 -4.7914 0.0055 9 8 3.7604 -5.8637 -0.0841 10 8 5.6676 -4.7433 0.1086 11 6 6.3747 -6.0115 0.1068 12 6 7.8557 -5.7611 0.2285 13 6 8.6226 -5.6005 -0.9152 14 6 9.9749 -5.3657 -0.8158 15 6 10.5809 -5.3007 0.4525 16 6 11.9706 -5.0667 0.5667 17 1 12.3722 -4.6289 1.4687 18 6 12.8258 -5.4021 -0.4890 19 7 12.4237 -6.2302 -1.4186 20 14 14.5414 -4.6675 -0.5709 21 1 15.5109 -5.6034 0.0530 22 1 14.9154 -4.4407 -1.9900 23 1 14.5615 -3.3745 0.1591 24 6 9.7936 -5.4709 1.6064 25 6 8.4419 -5.6982 1.4832 26 6 4.1790 -2.3056 0.1041 27 7 3.4793 -1.1903 0.1009 28 1 -0.3632 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 2.3792 1.5834 -1.0278 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5137 34 1 0.3774 -2.3933 -0.1884 35 1 1.6193 -4.5233 -0.1878 36 1 6.0378 -6.6166 0.9485 37 1 6.1712 -6.5395 -0.8248 38 1 8.1562 -5.6558 -1.8877 39 1 10.5697 -5.2364 -1.7080 40 1 13.0167 -6.4630 -2.1502 41 1 10.2484 -5.4233 2.5848 42 1 7.8356 -5.8288 2.3675 43 1 5.2550 -2.2629 0.1878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776114695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:24 Heat of formation + Delta-G solvation = -19.395851 kcal Electronic energy + Delta-G solvation = -25586.109816 eV Core-core repulsion = 21789.319934 eV Total energy + Delta-G solvation = -3796.789882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.77235 -39.61030 -37.65658 -36.83110 -35.91717 -33.83939 -32.79341 -31.26429 -30.50566 -29.33878 -28.64004 -27.31771 -26.07755 -23.88921 -23.48704 -22.49897 -21.06019 -20.68138 -20.01243 -18.12301 -17.54473 -17.36504 -16.82293 -16.13528 -15.96001 -15.65950 -15.32049 -15.00046 -14.65049 -14.33429 -13.88573 -13.85848 -13.46310 -13.41609 -13.04045 -12.86303 -12.70055 -12.53833 -12.40742 -12.30309 -12.18507 -12.00044 -11.53839 -11.23355 -11.10218 -10.65713 -10.59655 -10.35067 -10.30037 -10.09490 -10.03299 -9.67606 -9.57100 -9.44293 -9.19017 -7.93243 -7.53385 -7.42869 -6.85007 -4.43897 0.68900 1.17049 2.46859 2.52831 2.76888 2.97352 3.02916 3.04732 3.09739 3.43915 3.79942 3.87571 4.22340 4.52486 4.55686 4.71009 4.82000 4.85011 4.91474 4.99384 5.14180 5.24297 5.29120 5.49384 5.57061 5.64783 5.71129 5.72845 5.78725 5.97735 6.19584 6.25385 6.29001 6.34934 6.50391 6.87285 6.91160 6.94821 6.99908 7.21078 7.29114 7.54438 7.76707 7.83326 7.98394 8.03910 8.14041 8.21878 8.56374 8.81040 8.89371 10.09174 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.002211 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.937727 B =12661.150683 C =13700.750725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.610 5.610 3 C 0.094 3.906 4 C 0.424 3.576 5 C -0.254 4.254 6 C 0.027 3.973 7 C -0.240 4.240 8 C 0.513 3.487 9 O -0.526 6.526 10 O -0.348 6.348 11 C 0.138 3.862 12 C -0.234 4.234 13 C -0.075 4.075 14 C -0.170 4.170 15 C 0.119 3.881 16 C -0.456 4.456 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.786 5.786 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.230 4.230 25 C -0.063 4.063 26 C 0.217 3.783 27 N -0.549 5.549 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.282 0.718 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.870 11.038 0.515 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.321 5.321 3 C -0.049 4.049 4 C 0.188 3.812 5 C -0.278 4.278 6 C 0.002 3.998 7 C -0.246 4.246 8 C 0.358 3.642 9 O -0.417 6.417 10 O -0.264 6.264 11 C 0.066 3.934 12 C -0.236 4.236 13 C -0.093 4.093 14 C -0.190 4.190 15 C 0.116 3.884 16 C -0.485 4.485 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.411 5.411 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.183 1.183 24 C -0.250 4.250 25 C -0.082 4.082 26 C 0.057 3.943 27 N -0.267 5.267 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -19.607 11.568 0.341 22.768 hybrid contribution 0.320 -0.721 -0.211 0.817 sum -19.287 10.847 0.131 22.128 Atomic orbital electron populations 1.21799 0.78214 1.03349 1.01905 1.46230 1.05447 1.03447 1.77026 1.21665 0.97974 0.83571 1.01689 1.18607 0.88814 0.85963 0.87783 1.21089 1.01276 0.91326 1.14147 1.21133 0.92086 0.98694 0.87882 1.19939 0.93973 0.93063 1.17674 1.20795 0.82048 0.88564 0.72779 1.90784 1.72197 1.31348 1.47359 1.86734 1.18316 1.38863 1.82513 1.21717 0.89402 0.81290 1.00999 1.18661 0.90695 1.20152 0.94073 1.20542 0.94454 0.98809 0.95543 1.21292 0.92800 1.06559 0.98322 1.17687 0.93013 0.86587 0.91107 1.19664 0.91743 1.35847 1.01262 0.90193 1.25974 1.01126 0.92846 0.94431 1.69832 1.37672 1.23490 1.10113 0.86282 0.81239 0.80602 0.78558 1.19497 1.19942 1.18301 1.20952 0.93658 1.12874 0.97493 1.20393 0.94731 0.98246 0.94814 1.23042 1.00403 0.85350 0.85463 1.67359 1.05649 1.31437 1.22215 0.92560 0.90754 0.90727 0.93069 0.91691 0.89692 0.84342 0.83731 0.92038 0.91963 0.89293 0.86303 0.90676 0.88733 0.89274 0.80689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 10.27 59.85 0.61 1.05 16 2 N -0.61 -5.18 3.37 -189.70 -0.64 -5.82 16 3 C 0.09 0.68 10.49 59.85 0.63 1.31 16 4 C 0.42 4.73 7.36 -155.29 -1.14 3.59 16 5 C -0.25 -2.53 9.20 -39.65 -0.36 -2.90 16 6 C 0.03 0.32 9.65 -39.28 -0.38 -0.06 16 7 C -0.24 -3.40 5.89 -104.83 -0.62 -4.02 16 8 C 0.51 8.73 7.89 34.46 0.27 9.00 16 9 O -0.53 -9.87 16.20 -19.28 -0.31 -10.19 16 10 O -0.35 -6.43 9.47 -40.64 -0.38 -6.81 16 11 C 0.14 2.66 5.59 36.00 0.20 2.87 16 12 C -0.23 -5.19 5.54 -104.33 -0.58 -5.77 16 13 C -0.07 -1.75 9.67 -39.66 -0.38 -2.13 16 14 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 15 C 0.12 3.12 5.57 -106.82 -0.60 2.53 16 16 C -0.46 -11.87 9.05 -37.74 -0.34 -12.21 16 17 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 18 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 19 N -0.79 -19.93 10.97 55.55 0.61 -19.32 16 20 Si 0.91 18.23 29.60 -169.99 -5.03 13.20 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 24 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 25 C -0.06 -1.42 9.67 -39.66 -0.38 -1.81 16 26 C 0.22 2.95 10.79 -17.11 -0.18 2.77 16 27 N -0.55 -7.16 9.04 -12.13 -0.11 -7.27 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 30 H 0.07 0.31 5.94 -51.93 -0.31 0.00 16 31 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 33 H 0.08 0.75 7.28 -51.93 -0.38 0.38 16 34 H 0.14 0.96 5.98 -52.49 -0.31 0.64 16 35 H 0.14 1.55 7.73 -52.49 -0.41 1.14 16 36 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 38 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.12 3.14 6.18 -52.49 -0.32 2.81 16 40 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 41 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 43 H 0.18 2.33 7.61 -52.48 -0.40 1.93 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -30.11 369.91 -9.83 -39.94 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.47 Total: 5.42 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -4.06 Total: -14.73 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: -0.14 Total: -32.40 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.70 Total: -17.00 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.11 -9.83 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.541 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds