Wall clock time and date at job start Tue Mar 31 2020 14:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00121 * 2 1 4 4 C 1.38431 * 119.99803 * 180.02562 * 2 1 3 5 5 C 1.39412 * 119.53487 * 4.99310 * 4 2 1 6 6 C 1.36834 * 119.38226 * 180.02562 * 5 4 2 7 7 C 1.40404 * 118.49259 * 359.97438 * 6 5 4 8 8 C 1.47404 * 120.48447 * 180.02562 * 7 6 5 9 9 O 1.21513 * 119.99792 * 359.97438 * 8 7 6 10 10 O 1.34753 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.45196 * 117.00006 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47539 * 179.97438 * 11 10 8 13 13 C 1.38632 * 119.75049 * 269.73381 * 12 11 10 14 14 C 1.37618 * 120.25044 * 179.72211 * 13 12 11 15 15 C 1.40718 * 119.74315 * 0.55734 * 14 13 12 16 16 C 1.41391 * 120.24453 * 179.68302 * 15 14 13 17 17 H 1.08007 * 120.00039 * 155.31501 * 16 15 14 18 18 C 1.39944 * 120.00596 * 335.32097 * 16 15 14 19 19 N 1.30832 * 119.99350 * 342.23197 * 18 16 15 20 20 Si 1.86797 * 120.00577 * 162.22859 * 18 16 15 21 21 H 1.48497 * 109.47172 * 94.66405 * 20 18 16 22 22 H 1.48494 * 109.47221 * 214.66704 * 20 18 16 23 23 H 1.48502 * 109.46769 * 334.66488 * 20 18 16 24 24 C 1.40720 * 119.51163 * 359.71701 * 15 14 13 25 25 C 1.37617 * 119.74069 * 359.97438 * 24 15 14 26 26 C 1.39621 * 119.03427 * 0.02562 * 7 6 5 27 27 N 1.31660 * 120.51519 * 0.02562 * 26 7 6 28 28 H 1.09002 * 109.46557 * 269.99941 * 1 2 3 29 29 H 1.08997 * 109.47251 * 30.00193 * 1 2 3 30 30 H 1.09003 * 109.47025 * 150.00076 * 1 2 3 31 31 H 1.09010 * 109.46999 * 270.00239 * 3 2 1 32 32 H 1.09002 * 109.47046 * 29.99973 * 3 2 1 33 33 H 1.08994 * 109.47313 * 150.00342 * 3 2 1 34 34 H 1.07998 * 120.30778 * 0.03148 * 5 4 2 35 35 H 1.08002 * 120.75293 * 180.02562 * 6 5 4 36 36 H 1.09005 * 109.47570 * 300.00116 * 11 10 8 37 37 H 1.09000 * 109.47184 * 59.99711 * 11 10 8 38 38 H 1.08003 * 119.87480 * 359.97095 * 13 12 11 39 39 H 1.08000 * 120.13078 * 180.28094 * 14 13 12 40 40 H 0.97003 * 119.99438 * 180.02562 * 19 18 16 41 41 H 1.07995 * 120.13007 * 179.97438 * 24 15 14 42 42 H 1.08006 * 119.87281 * 180.02562 * 25 24 15 43 43 H 1.08005 * 119.74310 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1571 -1.1989 -0.0005 5 6 1.4542 -2.3981 -0.1066 6 6 2.1415 -3.5814 -0.1063 7 6 3.5409 -3.5432 0.0012 8 6 4.3249 -4.7914 0.0055 9 8 3.7604 -5.8637 -0.0841 10 8 5.6676 -4.7433 0.1086 11 6 6.3747 -6.0115 0.1068 12 6 7.8557 -5.7611 0.2285 13 6 8.6226 -5.6005 -0.9152 14 6 9.9749 -5.3657 -0.8158 15 6 10.5809 -5.3007 0.4525 16 6 11.9706 -5.0667 0.5667 17 1 12.3722 -4.6289 1.4687 18 6 12.8258 -5.4021 -0.4890 19 7 12.4237 -6.2302 -1.4186 20 14 14.5414 -4.6675 -0.5709 21 1 15.5109 -5.6034 0.0530 22 1 14.9154 -4.4407 -1.9900 23 1 14.5615 -3.3745 0.1591 24 6 9.7936 -5.4709 1.6064 25 6 8.4419 -5.6982 1.4832 26 6 4.1790 -2.3056 0.1041 27 7 3.4793 -1.1903 0.1009 28 1 -0.3632 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 2.3792 1.5834 -1.0278 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5137 34 1 0.3774 -2.3933 -0.1884 35 1 1.6193 -4.5233 -0.1878 36 1 6.0378 -6.6166 0.9485 37 1 6.1712 -6.5395 -0.8248 38 1 8.1562 -5.6558 -1.8877 39 1 10.5697 -5.2364 -1.7080 40 1 13.0167 -6.4630 -2.1502 41 1 10.2484 -5.4233 2.5848 42 1 7.8356 -5.8288 2.3675 43 1 5.2550 -2.2629 0.1878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776114695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:23 Heat of formation + Delta-G solvation = -33.278144 kcal Electronic energy + Delta-G solvation = -25586.711797 eV Core-core repulsion = 21789.319934 eV Total energy + Delta-G solvation = -3797.391863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80774 -40.84211 -39.44729 -37.67547 -37.29893 -35.66932 -33.70253 -32.71819 -31.78518 -31.21385 -29.16195 -28.96382 -27.05025 -25.51231 -24.39690 -23.51682 -22.93890 -21.91044 -21.69259 -19.26827 -19.18451 -18.52183 -17.90752 -17.40525 -17.25351 -17.06063 -16.34102 -16.12261 -15.77033 -15.61557 -15.46375 -15.25859 -14.53455 -14.46749 -14.23949 -14.02818 -13.86816 -13.80426 -13.71064 -13.37753 -13.27657 -13.05512 -13.03393 -12.77435 -12.76013 -12.40046 -12.22584 -11.73129 -11.65479 -11.44238 -11.28477 -11.20601 -11.02610 -10.88284 -10.52499 -9.42715 -9.32759 -8.69440 -8.68613 -6.38691 -0.32311 0.28491 0.74028 1.12160 1.38630 1.43639 1.54369 1.56365 1.85304 1.97665 2.20067 2.72944 2.82428 3.39799 3.66659 3.79100 3.86467 3.91033 4.08698 4.11549 4.13503 4.30350 4.44437 4.49152 4.49702 4.54423 4.57245 4.64204 4.78709 4.85753 4.94817 4.97979 5.01464 5.12662 5.14265 5.31295 5.37442 5.40108 5.50258 5.66122 5.86098 5.89522 6.06431 6.15650 6.18056 6.32726 6.65016 6.76115 6.89252 6.96894 6.98043 8.28497 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.002211 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.937727 B =12661.150683 C =13700.750725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.606 5.606 3 C 0.090 3.910 4 C 0.415 3.585 5 C -0.241 4.241 6 C 0.026 3.974 7 C -0.263 4.263 8 C 0.515 3.485 9 O -0.548 6.548 10 O -0.356 6.356 11 C 0.143 3.857 12 C -0.228 4.228 13 C -0.080 4.080 14 C -0.193 4.193 15 C 0.088 3.912 16 C -0.493 4.493 17 H 0.080 0.920 18 C 0.034 3.966 19 N -0.819 5.819 20 Si 0.984 3.016 21 H -0.261 1.261 22 H -0.265 1.265 23 H -0.258 1.258 24 C -0.245 4.245 25 C -0.065 4.065 26 C 0.215 3.785 27 N -0.569 5.569 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.175 0.825 35 H 0.155 0.845 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.290 0.710 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.207 12.432 0.649 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.315 5.315 3 C -0.053 4.053 4 C 0.178 3.822 5 C -0.265 4.265 6 C 0.001 3.999 7 C -0.269 4.269 8 C 0.363 3.637 9 O -0.440 6.440 10 O -0.273 6.273 11 C 0.071 3.929 12 C -0.229 4.229 13 C -0.098 4.098 14 C -0.213 4.213 15 C 0.085 3.915 16 C -0.521 4.521 17 H 0.098 0.902 18 C -0.182 4.182 19 N -0.444 5.444 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.181 1.181 24 C -0.264 4.264 25 C -0.083 4.083 26 C 0.055 3.945 27 N -0.287 5.287 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.192 0.808 35 H 0.172 0.828 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.136 0.864 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.998 12.994 0.480 25.554 hybrid contribution 0.766 -1.024 -0.239 1.301 sum -21.232 11.971 0.241 24.375 Atomic orbital electron populations 1.22114 0.75743 1.05030 1.03171 1.46631 1.07015 1.02846 1.75047 1.21761 0.97706 0.83781 1.02044 1.19002 0.88483 0.87558 0.87124 1.21393 1.02858 0.89988 1.12240 1.21293 0.91046 0.99930 0.87632 1.19827 0.94813 0.91650 1.20651 1.21223 0.81239 0.89399 0.71873 1.90763 1.72206 1.32296 1.48757 1.86697 1.19551 1.38014 1.82998 1.21544 0.87732 0.81849 1.01815 1.18957 0.92359 1.18046 0.93561 1.20772 0.93846 0.98210 0.96988 1.21263 0.93745 1.08481 0.97798 1.18047 0.93880 0.87576 0.91973 1.19913 0.92300 1.37555 1.02369 0.90221 1.26838 1.05152 0.92612 0.93563 1.69879 1.39459 1.24303 1.10783 0.85162 0.75903 0.79615 0.78877 1.18604 1.18984 1.18150 1.21166 0.94567 1.13267 0.97413 1.20709 0.94342 0.97154 0.96095 1.22921 1.00302 0.85595 0.85715 1.67363 1.06957 1.31077 1.23330 0.91387 0.88621 0.89616 0.92724 0.88884 0.91679 0.80766 0.82760 0.90910 0.91461 0.87623 0.87831 0.89894 0.87889 0.86428 0.81478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 10.27 127.77 1.31 1.77 16 2 N -0.61 -8.54 3.37 -754.08 -2.54 -11.08 16 3 C 0.09 1.11 10.49 127.77 1.34 2.45 16 4 C 0.42 8.42 7.36 133.26 0.98 9.41 16 5 C -0.24 -4.13 9.20 22.22 0.20 -3.93 16 6 C 0.03 0.57 9.65 22.47 0.22 0.79 16 7 C -0.26 -7.33 5.89 -20.00 -0.12 -7.44 16 8 C 0.52 17.42 7.89 70.24 0.55 17.98 16 9 O -0.55 -20.29 16.20 19.79 0.32 -19.97 16 10 O -0.36 -13.11 9.47 -56.64 -0.54 -13.64 16 11 C 0.14 5.43 5.59 71.23 0.40 5.83 16 12 C -0.23 -10.08 5.54 -19.68 -0.11 -10.19 16 13 C -0.08 -3.80 9.67 22.22 0.21 -3.58 16 14 C -0.19 -10.33 8.70 22.73 0.20 -10.13 16 15 C 0.09 4.79 5.57 -21.29 -0.12 4.67 16 16 C -0.49 -26.53 9.05 23.46 0.21 -26.31 16 17 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 18 C 0.03 1.72 5.14 85.26 0.44 2.15 16 19 N -0.82 -42.69 10.97 21.83 0.24 -42.45 16 20 Si 0.98 37.81 29.60 68.60 2.03 39.84 16 21 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 22 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 24 C -0.24 -12.13 9.80 22.73 0.22 -11.91 16 25 C -0.06 -2.90 9.67 22.22 0.21 -2.68 16 26 C 0.21 5.87 10.79 85.05 0.92 6.78 16 27 N -0.57 -14.48 9.04 -192.28 -1.74 -16.22 16 28 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.10 0.19 8.07 -2.39 -0.02 0.17 16 30 H 0.09 0.32 5.94 -2.39 -0.01 0.30 16 31 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.09 0.63 8.07 -2.39 -0.02 0.61 16 33 H 0.06 1.09 7.28 -2.39 -0.02 1.08 16 34 H 0.18 1.65 5.98 -2.91 -0.02 1.63 16 35 H 0.15 3.02 7.73 -2.91 -0.02 3.00 16 36 H 0.07 2.60 8.08 -2.38 -0.02 2.58 16 37 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 38 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.10 5.75 6.18 -2.91 -0.02 5.73 16 40 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 41 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 42 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 43 H 0.17 4.63 7.61 -2.91 -0.02 4.61 16 Total: -1.00 -66.95 369.91 5.88 -61.07 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 1.03 Total: 26.83 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 7.08 Total: -24.37 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -4.04 Total: -69.75 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.22 Total: -33.62 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -66.95 5.88 -61.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.789 kcal (2) G-P(sol) polarization free energy of solvation -66.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds