Wall clock time and date at job start Tue Mar 31 2020 14:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00240 * 2 1 4 4 C 1.38234 * 110.99775 * 123.95134 * 2 1 3 5 5 N 1.32431 * 119.83018 * 301.71098 * 4 2 1 6 6 C 1.31841 * 121.77707 * 179.67699 * 5 4 2 7 7 C 1.38395 * 121.23403 * 0.63831 * 6 5 4 8 8 C 1.38313 * 119.51265 * 359.39817 * 7 6 5 9 9 C 1.40039 * 118.36084 * 0.27727 * 8 7 6 10 10 C 1.47286 * 120.61235 * 179.97438 * 9 8 7 11 11 O 1.21521 * 120.00096 * 174.60894 * 10 9 8 12 12 O 1.34767 * 119.99709 * 354.60400 * 10 9 8 13 13 C 1.45208 * 116.99821 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47160 * 180.02562 * 13 12 10 15 15 C 1.38635 * 119.74759 * 269.72834 * 14 13 12 16 16 C 1.37623 * 120.24501 * 179.72185 * 15 14 13 17 17 C 1.40710 * 119.74653 * 0.56405 * 16 15 14 18 18 C 1.41398 * 120.24473 * 179.68107 * 17 16 15 19 19 H 1.07994 * 119.99696 * 154.24181 * 18 17 16 20 20 C 1.39945 * 119.99811 * 334.23925 * 18 17 16 21 21 N 1.30819 * 120.00226 * 341.35855 * 20 18 17 22 22 Si 1.86806 * 119.99508 * 161.35691 * 20 18 17 23 23 H 1.48501 * 109.47058 * 94.98343 * 22 20 18 24 24 H 1.48499 * 109.46658 * 214.98049 * 22 20 18 25 25 H 1.48493 * 109.47249 * 334.97935 * 22 20 18 26 26 C 1.40719 * 119.51094 * 359.71131 * 17 16 15 27 27 C 1.37617 * 119.74275 * 359.97438 * 26 17 16 28 28 H 1.09006 * 109.47001 * 296.05566 * 1 2 3 29 29 H 1.09003 * 109.46794 * 56.04712 * 1 2 3 30 30 H 1.08995 * 109.47910 * 176.04748 * 1 2 3 31 31 H 1.09001 * 109.47094 * 187.33707 * 3 2 1 32 32 H 1.09004 * 109.47344 * 307.33541 * 3 2 1 33 33 H 1.09001 * 109.47568 * 67.34052 * 3 2 1 34 34 H 1.08001 * 119.38603 * 180.31660 * 6 5 4 35 35 H 1.08003 * 120.24292 * 179.67437 * 7 6 5 36 36 H 1.07996 * 120.81740 * 180.30044 * 8 7 6 37 37 H 1.08999 * 109.46648 * 300.00261 * 13 12 10 38 38 H 1.08995 * 109.47040 * 59.99698 * 13 12 10 39 39 H 1.08001 * 119.87460 * 359.97438 * 15 14 13 40 40 H 1.08004 * 120.12483 * 180.27624 * 16 15 14 41 41 H 0.97001 * 119.99908 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.12694 * 179.97438 * 26 17 16 43 43 H 1.08003 * 119.86884 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9643 -0.7208 1.0705 5 7 1.6366 -0.3744 2.3060 6 6 2.0818 -1.0383 3.3544 7 6 2.9265 -2.1250 3.2100 8 6 3.3027 -2.5319 1.9428 9 6 2.8136 -1.8174 0.8421 10 6 3.1829 -2.2073 -0.5293 11 8 2.6762 -1.6428 -1.4788 12 8 4.0827 -3.1900 -0.7313 13 6 4.3991 -3.5211 -2.1093 14 6 5.4151 -4.6338 -2.1380 15 6 6.7677 -4.3301 -2.1477 16 6 7.7044 -5.3381 -2.1681 17 6 7.2845 -6.6809 -2.1911 18 6 8.2378 -7.7249 -2.2190 19 1 7.9829 -8.6994 -1.8296 20 6 9.5115 -7.4952 -2.7513 21 7 9.7165 -6.4708 -3.5387 22 14 10.9190 -8.6516 -2.3375 23 1 11.0462 -9.6778 -3.4033 24 1 12.1831 -7.8782 -2.2416 25 1 10.6467 -9.3180 -1.0387 26 6 5.9088 -6.9772 -2.1868 27 6 4.9900 -5.9531 -2.1597 28 1 -0.3633 0.4514 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3635 -1.0251 -0.0708 31 1 3.0772 1.3452 -0.1312 32 1 1.5438 1.9340 -0.8171 33 1 1.7561 1.8525 0.9483 34 1 1.7858 -0.7252 4.3448 35 1 3.2858 -2.6541 4.0803 36 1 3.9570 -3.3800 1.8055 37 1 3.4932 -3.8434 -2.6226 38 1 4.8072 -2.6429 -2.6094 39 1 7.0876 -3.2986 -2.1351 40 1 8.7577 -5.0994 -2.1711 41 1 10.5994 -6.3114 -3.9073 42 1 5.5755 -8.0043 -2.2048 43 1 3.9337 -6.1782 -2.1559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776214766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:27 Heat of formation + Delta-G solvation = -9.191543 kcal Electronic energy + Delta-G solvation = -26271.421876 eV Core-core repulsion = 22475.074487 eV Total energy + Delta-G solvation = -3796.347390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.01688 -39.45594 -37.63030 -37.11857 -35.77037 -33.85808 -32.88670 -30.99036 -30.61495 -29.37603 -27.76905 -27.29025 -25.43420 -24.86815 -23.64970 -21.83419 -21.10441 -20.97515 -20.02618 -17.79412 -17.38911 -17.33697 -16.90724 -16.11238 -15.96442 -15.42633 -15.25868 -15.10717 -14.42832 -14.19372 -13.90854 -13.78289 -13.54768 -13.47450 -12.98356 -12.66393 -12.43064 -12.40076 -12.23658 -12.07233 -12.02441 -11.87247 -11.54274 -11.26215 -11.12573 -10.63220 -10.60557 -10.24389 -10.13219 -10.06516 -10.03023 -9.67421 -9.46774 -9.25289 -9.21293 -8.64850 -7.55983 -7.45454 -6.87950 -4.46082 0.38683 0.90084 2.44255 2.74333 2.94080 3.00098 3.02508 3.07723 3.33897 3.45671 3.57545 3.85759 4.18083 4.51416 4.61633 4.67512 4.85092 4.95174 5.13866 5.19845 5.34838 5.36783 5.46786 5.62031 5.70544 5.71753 5.72062 5.72926 5.74711 5.83971 6.11520 6.16151 6.26203 6.32037 6.63030 6.85870 6.90738 6.98033 7.04855 7.17405 7.25455 7.51755 7.52853 7.73869 7.95517 8.00596 8.19195 8.20250 8.53444 8.78416 8.86498 10.07244 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.002370 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.181005 B =11813.127114 C =12317.387221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.479 5.479 3 C 0.034 3.966 4 C 0.348 3.652 5 N -0.520 5.520 6 C 0.135 3.865 7 C -0.188 4.188 8 C -0.016 4.016 9 C -0.143 4.143 10 C 0.498 3.502 11 O -0.474 6.474 12 O -0.353 6.353 13 C 0.139 3.861 14 C -0.234 4.234 15 C -0.075 4.075 16 C -0.170 4.170 17 C 0.120 3.880 18 C -0.459 4.459 19 H 0.080 0.920 20 C 0.077 3.923 21 N -0.786 5.786 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.230 4.230 27 C -0.064 4.064 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.160 0.840 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.283 0.717 42 H 0.095 0.905 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 10.503 10.809 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.202 5.202 3 C -0.113 4.113 4 C 0.119 3.881 5 N -0.233 5.233 6 C -0.023 4.023 7 C -0.208 4.208 8 C -0.042 4.042 9 C -0.148 4.148 10 C 0.339 3.661 11 O -0.361 6.361 12 O -0.271 6.271 13 C 0.068 3.932 14 C -0.235 4.235 15 C -0.093 4.093 16 C -0.189 4.189 17 C 0.117 3.883 18 C -0.488 4.488 19 H 0.098 0.902 20 C -0.142 4.142 21 N -0.410 5.410 22 Si 0.732 3.268 23 H -0.195 1.195 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.249 4.249 27 C -0.082 4.082 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.178 0.822 35 H 0.163 0.837 36 H 0.175 0.825 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.134 0.866 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.811 11.274 9.978 19.136 hybrid contribution 0.991 -0.812 0.561 1.399 sum -10.820 10.462 10.540 18.374 Atomic orbital electron populations 1.22350 0.84918 1.02661 1.01308 1.59926 1.09382 1.14845 1.36010 1.22371 1.00992 0.86699 1.01212 1.19799 0.90292 0.90525 0.87488 1.67895 1.25059 1.30992 0.99338 1.22811 0.91567 0.90657 0.97291 1.22174 1.00798 0.99475 0.98383 1.22099 0.93884 0.97128 0.91071 1.20086 1.03010 0.98976 0.92736 1.20607 0.77995 0.78577 0.88894 1.90862 1.50861 1.51583 1.42761 1.86735 1.55554 1.50263 1.34533 1.21686 0.97191 0.96688 0.77685 1.18672 0.92605 0.92111 1.20113 1.20537 0.92377 0.97428 0.98998 1.21234 0.98568 0.92267 1.06837 1.17676 0.91367 0.92837 0.86387 1.19650 0.95921 0.98240 1.34958 0.90180 1.25956 1.00076 0.95692 0.92524 1.69828 1.24149 1.26229 1.20831 0.86305 0.79816 0.80489 0.80215 1.19477 1.19930 1.18307 1.20959 0.93349 0.96812 1.13813 1.20394 0.97109 0.92367 0.98327 0.94125 0.90501 0.91546 0.91426 0.90390 0.94270 0.82247 0.83712 0.82537 0.92074 0.91989 0.89315 0.86598 0.90649 0.88728 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.41 60.06 0.57 0.94 16 2 N -0.48 -6.38 2.96 -188.74 -0.56 -6.94 16 3 C 0.03 0.38 9.53 60.06 0.57 0.95 16 4 C 0.35 4.70 5.34 -155.19 -0.83 3.87 16 5 N -0.52 -6.17 9.44 -12.19 -0.12 -6.29 16 6 C 0.14 1.23 11.16 -17.49 -0.20 1.03 16 7 C -0.19 -1.66 10.09 -39.50 -0.40 -2.06 16 8 C -0.02 -0.18 9.73 -38.88 -0.38 -0.56 16 9 C -0.14 -2.05 5.91 -104.66 -0.62 -2.67 16 10 C 0.50 8.49 7.88 34.41 0.27 8.76 16 11 O -0.47 -8.88 14.88 -19.28 -0.29 -9.17 16 12 O -0.35 -6.46 9.54 -40.67 -0.39 -6.85 16 13 C 0.14 2.67 5.59 36.00 0.20 2.87 16 14 C -0.23 -5.11 5.54 -104.33 -0.58 -5.69 16 15 C -0.07 -1.73 9.67 -39.66 -0.38 -2.11 16 16 C -0.17 -4.31 8.69 -38.87 -0.34 -4.65 16 17 C 0.12 3.12 5.56 -106.82 -0.59 2.53 16 18 C -0.46 -11.82 9.04 -37.74 -0.34 -12.16 16 19 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 20 C 0.08 1.87 5.11 -17.34 -0.09 1.78 16 21 N -0.79 -19.78 11.10 55.55 0.62 -19.17 16 22 Si 0.91 18.03 29.60 -169.99 -5.03 13.00 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 27 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 28 H 0.04 0.42 7.80 -51.93 -0.40 0.01 16 29 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 33 H 0.04 0.41 7.86 -51.93 -0.41 0.00 16 34 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.16 1.76 7.71 -52.49 -0.40 1.35 16 37 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 38 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 39 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.12 3.02 6.29 -52.48 -0.33 2.69 16 41 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 42 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 43 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -29.56 371.28 -9.80 -39.36 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.73 Total: 5.30 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -3.90 Total: -14.86 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: -0.06 Total: -32.39 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.67 Total: -16.01 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.56 -9.80 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776214766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.169 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds