Wall clock time and date at job start Tue Mar 31 2020 14:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00240 * 2 1 4 4 C 1.38234 * 110.99775 * 123.95134 * 2 1 3 5 5 N 1.32431 * 119.83018 * 301.71098 * 4 2 1 6 6 C 1.31841 * 121.77707 * 179.67699 * 5 4 2 7 7 C 1.38395 * 121.23403 * 0.63831 * 6 5 4 8 8 C 1.38313 * 119.51265 * 359.39817 * 7 6 5 9 9 C 1.40039 * 118.36084 * 0.27727 * 8 7 6 10 10 C 1.47286 * 120.61235 * 179.97438 * 9 8 7 11 11 O 1.21521 * 120.00096 * 174.60894 * 10 9 8 12 12 O 1.34767 * 119.99709 * 354.60400 * 10 9 8 13 13 C 1.45208 * 116.99821 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47160 * 180.02562 * 13 12 10 15 15 C 1.38635 * 119.74759 * 269.72834 * 14 13 12 16 16 C 1.37623 * 120.24501 * 179.72185 * 15 14 13 17 17 C 1.40710 * 119.74653 * 0.56405 * 16 15 14 18 18 C 1.41398 * 120.24473 * 179.68107 * 17 16 15 19 19 H 1.07994 * 119.99696 * 154.24181 * 18 17 16 20 20 C 1.39945 * 119.99811 * 334.23925 * 18 17 16 21 21 N 1.30819 * 120.00226 * 341.35855 * 20 18 17 22 22 Si 1.86806 * 119.99508 * 161.35691 * 20 18 17 23 23 H 1.48501 * 109.47058 * 94.98343 * 22 20 18 24 24 H 1.48499 * 109.46658 * 214.98049 * 22 20 18 25 25 H 1.48493 * 109.47249 * 334.97935 * 22 20 18 26 26 C 1.40719 * 119.51094 * 359.71131 * 17 16 15 27 27 C 1.37617 * 119.74275 * 359.97438 * 26 17 16 28 28 H 1.09006 * 109.47001 * 296.05566 * 1 2 3 29 29 H 1.09003 * 109.46794 * 56.04712 * 1 2 3 30 30 H 1.08995 * 109.47910 * 176.04748 * 1 2 3 31 31 H 1.09001 * 109.47094 * 187.33707 * 3 2 1 32 32 H 1.09004 * 109.47344 * 307.33541 * 3 2 1 33 33 H 1.09001 * 109.47568 * 67.34052 * 3 2 1 34 34 H 1.08001 * 119.38603 * 180.31660 * 6 5 4 35 35 H 1.08003 * 120.24292 * 179.67437 * 7 6 5 36 36 H 1.07996 * 120.81740 * 180.30044 * 8 7 6 37 37 H 1.08999 * 109.46648 * 300.00261 * 13 12 10 38 38 H 1.08995 * 109.47040 * 59.99698 * 13 12 10 39 39 H 1.08001 * 119.87460 * 359.97438 * 15 14 13 40 40 H 1.08004 * 120.12483 * 180.27624 * 16 15 14 41 41 H 0.97001 * 119.99908 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.12694 * 179.97438 * 26 17 16 43 43 H 1.08003 * 119.86884 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9643 -0.7208 1.0705 5 7 1.6366 -0.3744 2.3060 6 6 2.0818 -1.0383 3.3544 7 6 2.9265 -2.1250 3.2100 8 6 3.3027 -2.5319 1.9428 9 6 2.8136 -1.8174 0.8421 10 6 3.1829 -2.2073 -0.5293 11 8 2.6762 -1.6428 -1.4788 12 8 4.0827 -3.1900 -0.7313 13 6 4.3991 -3.5211 -2.1093 14 6 5.4151 -4.6338 -2.1380 15 6 6.7677 -4.3301 -2.1477 16 6 7.7044 -5.3381 -2.1681 17 6 7.2845 -6.6809 -2.1911 18 6 8.2378 -7.7249 -2.2190 19 1 7.9829 -8.6994 -1.8296 20 6 9.5115 -7.4952 -2.7513 21 7 9.7165 -6.4708 -3.5387 22 14 10.9190 -8.6516 -2.3375 23 1 11.0462 -9.6778 -3.4033 24 1 12.1831 -7.8782 -2.2416 25 1 10.6467 -9.3180 -1.0387 26 6 5.9088 -6.9772 -2.1868 27 6 4.9900 -5.9531 -2.1597 28 1 -0.3633 0.4514 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3635 -1.0251 -0.0708 31 1 3.0772 1.3452 -0.1312 32 1 1.5438 1.9340 -0.8171 33 1 1.7561 1.8525 0.9483 34 1 1.7858 -0.7252 4.3448 35 1 3.2858 -2.6541 4.0803 36 1 3.9570 -3.3800 1.8055 37 1 3.4932 -3.8434 -2.6226 38 1 4.8072 -2.6429 -2.6094 39 1 7.0876 -3.2986 -2.1351 40 1 8.7577 -5.0994 -2.1711 41 1 10.5994 -6.3114 -3.9073 42 1 5.5755 -8.0043 -2.2048 43 1 3.9337 -6.1782 -2.1559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776214766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:26 Heat of formation + Delta-G solvation = -22.855752 kcal Electronic energy + Delta-G solvation = -26272.014401 eV Core-core repulsion = 22475.074487 eV Total energy + Delta-G solvation = -3796.939914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00580 -40.75068 -39.41531 -38.01148 -37.20239 -35.65967 -33.84188 -32.53115 -31.70151 -31.23254 -28.98655 -28.61958 -26.53520 -25.86380 -25.17397 -22.96314 -22.81721 -22.15374 -21.77433 -19.26148 -18.93627 -18.33783 -17.94613 -17.44759 -17.20920 -17.06653 -16.32173 -16.15507 -15.79495 -15.58882 -15.40886 -15.05222 -14.72299 -14.45237 -14.30702 -13.94694 -13.87603 -13.79092 -13.57131 -13.26055 -13.20142 -13.04906 -12.95942 -12.78037 -12.74499 -12.39132 -12.20917 -11.62230 -11.59477 -11.41014 -11.28045 -11.04024 -11.02317 -10.91502 -10.10786 -9.55869 -9.42772 -9.32698 -8.69670 -6.38822 -0.54591 0.05701 0.73200 1.11079 1.38716 1.43014 1.54366 1.58772 1.90017 2.19985 2.56303 2.65072 2.71763 3.38716 3.64445 3.76024 3.88250 3.93290 4.07817 4.12160 4.13028 4.32313 4.34659 4.39818 4.48646 4.53540 4.55521 4.61285 4.63321 4.84866 4.88396 4.94171 5.00574 5.04853 5.12798 5.29533 5.37734 5.38921 5.50976 5.65627 5.78257 5.88541 6.05692 6.14591 6.15778 6.32313 6.64258 6.68839 6.85860 6.88924 6.97337 8.28406 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.002370 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.181005 B =11813.127114 C =12317.387221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.505 5.505 3 C 0.038 3.962 4 C 0.340 3.660 5 N -0.531 5.531 6 C 0.144 3.856 7 C -0.173 4.173 8 C -0.022 4.022 9 C -0.174 4.174 10 C 0.499 3.501 11 O -0.497 6.497 12 O -0.359 6.359 13 C 0.146 3.854 14 C -0.227 4.227 15 C -0.079 4.079 16 C -0.191 4.191 17 C 0.090 3.910 18 C -0.495 4.495 19 H 0.080 0.920 20 C 0.036 3.964 21 N -0.819 5.819 22 Si 0.983 3.017 23 H -0.262 1.262 24 H -0.266 1.266 25 H -0.257 1.257 26 C -0.243 4.243 27 C -0.064 4.064 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.202 0.798 35 H 0.183 0.817 36 H 0.156 0.844 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.290 0.710 42 H 0.103 0.897 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.213 10.869 12.916 20.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.228 5.228 3 C -0.108 4.108 4 C 0.112 3.888 5 N -0.244 5.244 6 C -0.015 4.015 7 C -0.192 4.192 8 C -0.048 4.048 9 C -0.180 4.180 10 C 0.342 3.658 11 O -0.386 6.386 12 O -0.277 6.277 13 C 0.073 3.927 14 C -0.228 4.228 15 C -0.098 4.098 16 C -0.211 4.211 17 C 0.087 3.913 18 C -0.524 4.524 19 H 0.098 0.902 20 C -0.180 4.180 21 N -0.445 5.445 22 Si 0.803 3.197 23 H -0.187 1.187 24 H -0.190 1.190 25 H -0.181 1.181 26 C -0.263 4.263 27 C -0.082 4.082 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.218 0.782 35 H 0.201 0.799 36 H 0.173 0.827 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.583 11.651 12.089 20.981 hybrid contribution 1.075 -0.810 0.010 1.346 sum -11.508 10.841 12.099 19.908 Atomic orbital electron populations 1.22335 0.83904 1.02299 1.02196 1.59895 1.10468 1.15719 1.36725 1.22352 1.00226 0.86135 1.02088 1.19842 0.90292 0.90391 0.88285 1.67984 1.25587 1.31626 0.99229 1.23582 0.90019 0.89711 0.98164 1.22561 0.99445 0.98966 0.98249 1.22226 0.93908 0.96976 0.91687 1.20047 1.05389 1.00848 0.91673 1.21097 0.76993 0.77581 0.90081 1.90837 1.51673 1.52264 1.43797 1.86695 1.56347 1.51142 1.33499 1.21490 0.96807 0.95858 0.78525 1.18952 0.92731 0.93041 1.18097 1.20754 0.92803 0.97799 0.98428 1.21195 0.98294 0.92886 1.08704 1.18026 0.92551 0.93338 0.87345 1.19904 0.97385 0.98435 1.36635 0.90176 1.26812 1.02141 0.97341 0.91685 1.69874 1.25186 1.27875 1.21529 0.85187 0.76310 0.78264 0.79955 1.18665 1.19023 1.18066 1.21168 0.93075 0.97887 1.14143 1.20694 0.98302 0.92037 0.97191 0.93515 0.89191 0.92572 0.92719 0.88970 0.93688 0.78154 0.79940 0.82662 0.91134 0.91706 0.87737 0.88150 0.89889 0.87872 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 9.41 127.69 1.20 2.03 16 2 N -0.51 -13.16 2.96 -751.04 -2.22 -15.39 16 3 C 0.04 0.82 9.53 127.69 1.22 2.04 16 4 C 0.34 8.87 5.34 133.67 0.71 9.59 16 5 N -0.53 -11.41 9.44 -192.48 -1.82 -13.23 16 6 C 0.14 2.07 11.16 84.73 0.95 3.02 16 7 C -0.17 -2.43 10.09 22.33 0.23 -2.21 16 8 C -0.02 -0.48 9.73 22.72 0.22 -0.26 16 9 C -0.17 -4.88 5.91 -19.89 -0.12 -5.00 16 10 C 0.50 17.01 7.88 70.20 0.55 17.56 16 11 O -0.50 -18.75 14.88 19.77 0.29 -18.46 16 12 O -0.36 -13.01 9.54 -56.78 -0.54 -13.55 16 13 C 0.15 5.48 5.59 71.24 0.40 5.88 16 14 C -0.23 -9.87 5.54 -19.68 -0.11 -9.98 16 15 C -0.08 -3.72 9.67 22.22 0.21 -3.50 16 16 C -0.19 -10.04 8.69 22.73 0.20 -9.84 16 17 C 0.09 4.81 5.56 -21.29 -0.12 4.70 16 18 C -0.49 -26.23 9.04 23.46 0.21 -26.02 16 19 H 0.08 4.07 7.91 -2.91 -0.02 4.04 16 20 C 0.04 1.79 5.11 85.26 0.44 2.23 16 21 N -0.82 -42.29 11.10 21.83 0.24 -42.04 16 22 Si 0.98 37.19 29.60 68.60 2.03 39.22 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 24 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 25 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 26 C -0.24 -11.83 9.80 22.73 0.22 -11.61 16 27 C -0.06 -2.81 9.67 22.22 0.21 -2.59 16 28 H 0.05 0.90 7.80 -2.38 -0.02 0.88 16 29 H 0.09 1.59 8.08 -2.39 -0.02 1.57 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.64 8.06 -2.39 -0.02 1.63 16 33 H 0.04 0.89 7.86 -2.39 -0.02 0.87 16 34 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.16 3.32 7.71 -2.91 -0.02 3.29 16 37 H 0.07 2.52 8.08 -2.39 -0.02 2.50 16 38 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 39 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 40 H 0.10 5.48 6.29 -2.91 -0.02 5.46 16 41 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 42 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 43 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -65.93 371.28 5.63 -60.30 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 1.02 Total: 27.11 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 6.63 Total: -23.96 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -3.80 Total: -70.66 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.25 Total: -32.00 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -65.93 5.63 -60.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776214766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.442 kcal (2) G-P(sol) polarization free energy of solvation -65.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds