Wall clock time and date at job start Tue Mar 31 2020 14:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99610 * 2 1 4 4 C 1.39022 * 120.00049 * 179.97438 * 2 1 3 5 5 C 1.39125 * 119.64551 * 0.56437 * 4 2 1 6 6 C 1.39539 * 118.92353 * 180.29701 * 5 4 2 7 7 C 1.48057 * 120.88683 * 179.72225 * 6 5 4 8 8 O 1.21429 * 120.00148 * 359.97438 * 7 6 5 9 9 O 1.34670 * 120.00182 * 179.97438 * 7 6 5 10 10 C 1.45206 * 117.00053 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.46987 * 180.02562 * 10 9 7 12 12 C 1.38632 * 119.74997 * 269.72769 * 11 10 9 13 13 C 1.37617 * 120.24938 * 179.72472 * 12 11 10 14 14 C 1.40714 * 119.74673 * 0.56472 * 13 12 11 15 15 C 1.41392 * 120.24770 * 179.68477 * 14 13 12 16 16 H 1.08001 * 119.99893 * 214.38186 * 15 14 13 17 17 C 1.39942 * 119.99775 * 34.38070 * 15 14 13 18 18 N 1.30821 * 120.00500 * 356.34093 * 17 15 14 19 19 Si 1.86806 * 119.99798 * 176.34398 * 17 15 14 20 20 H 1.48499 * 109.47227 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47113 * 120.00155 * 19 17 15 22 22 H 1.48497 * 109.47029 * 239.99942 * 19 17 15 23 23 C 1.40717 * 119.50897 * 359.70667 * 14 13 12 24 24 C 1.37622 * 119.74309 * 0.02562 * 23 14 13 25 25 C 1.40060 * 118.22423 * 359.45769 * 6 5 4 26 26 C 1.37942 * 119.17250 * 0.54338 * 25 6 5 27 27 N 1.31922 * 121.00541 * 359.71898 * 26 25 6 28 28 H 1.09000 * 109.47312 * 185.72934 * 1 2 3 29 29 H 1.08994 * 109.47512 * 305.73182 * 1 2 3 30 30 H 1.09003 * 109.47260 * 65.73159 * 1 2 3 31 31 H 1.08998 * 109.47015 * 269.99521 * 3 2 1 32 32 H 1.08997 * 109.47100 * 29.99836 * 3 2 1 33 33 H 1.09005 * 109.46883 * 149.99813 * 3 2 1 34 34 H 1.08001 * 120.53842 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.46874 * 299.99596 * 10 9 7 36 36 H 1.08996 * 109.47168 * 60.00366 * 10 9 7 37 37 H 1.08001 * 119.87285 * 359.97438 * 12 11 10 38 38 H 1.08001 * 120.12556 * 180.28099 * 13 12 11 39 39 H 0.97004 * 120.00583 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.12972 * 179.97438 * 23 14 13 41 41 H 1.08009 * 119.87166 * 179.97438 * 24 23 14 42 42 H 1.08001 * 120.41076 * 180.25953 * 25 6 5 43 43 H 1.08006 * 119.49650 * 179.74133 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1601 -1.2040 0.0005 5 6 1.4571 -2.4045 -0.0108 6 6 2.1699 -3.6040 -0.0038 7 6 1.4659 -4.9065 -0.0092 8 8 0.2521 -4.9406 -0.0194 9 8 2.1717 -6.0535 -0.0028 10 6 1.4153 -7.2930 -0.0081 11 6 2.3664 -8.4619 0.0010 12 6 2.8063 -9.0001 -1.1985 13 6 3.6793 -10.0639 -1.2022 14 6 4.1161 -10.6129 0.0176 15 6 5.0077 -11.7102 0.0260 16 1 4.9319 -12.4617 0.7980 17 6 5.9885 -11.8225 -0.9659 18 7 6.0352 -10.9519 -1.9412 19 14 7.2310 -13.2157 -0.8973 20 1 6.9654 -14.0576 0.2968 21 1 7.1138 -14.0444 -2.1240 22 1 8.6022 -12.6522 -0.8099 23 6 3.6586 -10.0621 1.2289 24 6 2.7901 -8.9947 1.2086 25 6 3.5692 -3.5430 0.0028 26 6 4.1884 -2.3105 0.0136 27 7 3.4831 -1.1956 0.0122 28 1 -0.3634 -1.0225 0.1026 29 1 -0.3634 0.6001 0.8341 30 1 -0.3634 0.4224 -0.9369 31 1 2.3791 1.5834 -1.0276 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1385 0.5139 34 1 0.3771 -2.4079 -0.0205 35 1 0.7803 -7.3349 0.8769 36 1 0.7947 -7.3360 -0.9031 37 1 2.4657 -8.5803 -2.1335 38 1 4.0243 -10.4787 -2.1378 39 1 6.7147 -11.0299 -2.6290 40 1 3.9870 -10.4758 2.1709 41 1 2.4372 -8.5705 2.1372 42 1 4.1559 -4.4498 0.0042 43 1 5.2671 -2.2574 0.0230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776215335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:30 Heat of formation + Delta-G solvation = -13.325577 kcal Electronic energy + Delta-G solvation = -25697.390526 eV Core-core repulsion = 21900.863871 eV Total energy + Delta-G solvation = -3796.526655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.79443 -39.71001 -37.72354 -36.74021 -36.12068 -33.81472 -32.87188 -30.86525 -30.56331 -29.40754 -28.63126 -27.30304 -25.64854 -24.83928 -23.47917 -22.34781 -21.10018 -20.62419 -20.07267 -18.25673 -17.38557 -17.28171 -16.32555 -16.10178 -15.96459 -15.77369 -15.56274 -15.30713 -14.55079 -14.35365 -14.12218 -13.89081 -13.81418 -13.50065 -12.91810 -12.83636 -12.55933 -12.44082 -12.38728 -12.30517 -12.04973 -11.76245 -11.72253 -11.20127 -11.01240 -10.89757 -10.53515 -10.39136 -10.31941 -10.22750 -9.94614 -9.75935 -9.65263 -9.48093 -9.27680 -7.79980 -7.58463 -7.35404 -6.72004 -4.50937 0.57385 1.15134 2.32097 2.62812 2.68557 2.92715 2.98920 3.04833 3.09843 3.29549 3.77440 3.90153 4.27952 4.53340 4.64988 4.76528 4.87946 4.91871 5.02406 5.05279 5.21802 5.33091 5.35004 5.53354 5.55204 5.56509 5.59875 5.62271 5.69552 5.98907 6.11670 6.20624 6.29245 6.29527 6.60766 6.69831 6.84835 7.01437 7.05369 7.14850 7.28673 7.52756 7.68929 7.88509 7.92344 7.96150 7.99737 8.20751 8.56300 8.81830 8.86044 10.18382 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.002188 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.405138 B =12793.217746 C =13571.724335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.619 5.619 3 C 0.102 3.898 4 C 0.393 3.607 5 C -0.183 4.183 6 C -0.030 4.030 7 C 0.503 3.497 8 O -0.510 6.510 9 O -0.339 6.339 10 C 0.135 3.865 11 C -0.224 4.224 12 C -0.082 4.082 13 C -0.157 4.157 14 C 0.114 3.886 15 C -0.459 4.459 16 H 0.078 0.922 17 C 0.069 3.931 18 N -0.804 5.804 19 Si 0.917 3.083 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.218 4.218 24 C -0.072 4.072 25 C -0.177 4.177 26 C 0.142 3.858 27 N -0.526 5.526 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.147 0.853 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.279 0.721 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.152 0.848 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 18.530 1.923 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.334 5.334 3 C -0.041 4.041 4 C 0.159 3.841 5 C -0.208 4.208 6 C -0.039 4.039 7 C 0.346 3.654 8 O -0.400 6.400 9 O -0.255 6.255 10 C 0.063 3.937 11 C -0.225 4.225 12 C -0.100 4.100 13 C -0.177 4.177 14 C 0.111 3.889 15 C -0.490 4.490 16 H 0.096 0.904 17 C -0.147 4.147 18 N -0.431 5.431 19 Si 0.741 3.259 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.238 4.238 24 C -0.090 4.090 25 C -0.200 4.200 26 C -0.014 4.014 27 N -0.244 5.244 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.164 0.836 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.170 0.830 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.645 19.458 1.716 20.333 hybrid contribution 0.105 -1.327 -0.063 1.332 sum -5.540 18.132 1.653 19.031 Atomic orbital electron populations 1.21818 0.78332 1.03665 1.01610 1.46140 1.05131 1.02857 1.79251 1.21528 0.97522 0.83738 1.01321 1.18116 0.88274 0.85626 0.92035 1.21533 1.01579 0.90183 1.07519 1.19332 0.93903 0.90576 1.00116 1.21112 0.85738 0.85338 0.73167 1.90781 1.14859 1.88499 1.45905 1.86767 1.41845 1.14611 1.82253 1.21826 0.92484 0.78195 1.01215 1.18739 1.09583 0.99958 0.94248 1.20633 0.97387 0.96906 0.95114 1.21585 0.98050 0.98526 0.99527 1.17762 0.88894 0.91425 0.90789 1.19650 1.12320 1.07338 1.09649 0.90354 1.25928 0.98567 0.96374 0.93796 1.69755 1.31200 1.32374 1.09746 0.86121 0.79839 0.80694 0.79212 1.18512 1.19879 1.19864 1.21113 1.05044 1.00214 0.97416 1.20421 0.96944 0.96451 0.95209 1.22300 0.93749 1.00621 1.03300 1.22468 0.99954 0.86244 0.92782 1.67013 1.05905 1.32601 1.18851 0.90014 0.91915 0.92364 0.93466 0.91906 0.90295 0.83550 0.91796 0.91698 0.89168 0.85170 0.90961 0.88556 0.89171 0.83020 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.60 59.85 0.63 1.25 16 2 N -0.62 -5.96 3.39 -189.69 -0.64 -6.61 16 3 C 0.10 0.78 10.51 59.85 0.63 1.41 16 4 C 0.39 4.78 7.38 -155.08 -1.14 3.63 16 5 C -0.18 -2.35 8.89 -38.77 -0.34 -2.70 16 6 C -0.03 -0.43 5.90 -104.70 -0.62 -1.05 16 7 C 0.50 8.45 7.92 34.76 0.28 8.72 16 8 O -0.51 -9.27 16.23 -19.21 -0.31 -9.58 16 9 O -0.34 -6.22 9.56 -40.41 -0.39 -6.60 16 10 C 0.13 2.51 5.59 36.01 0.20 2.71 16 11 C -0.22 -4.83 5.54 -104.33 -0.58 -5.41 16 12 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 13 C -0.16 -3.99 8.67 -38.87 -0.34 -4.33 16 14 C 0.11 2.95 5.55 -106.83 -0.59 2.36 16 15 C -0.46 -11.86 9.05 -37.74 -0.34 -12.20 16 16 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 17 C 0.07 1.71 5.42 -17.34 -0.09 1.61 16 18 N -0.80 -20.37 10.60 55.55 0.59 -19.78 16 19 Si 0.92 18.40 29.56 -169.99 -5.03 13.38 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 C -0.22 -5.20 9.80 -38.87 -0.38 -5.58 16 24 C -0.07 -1.57 9.67 -39.66 -0.38 -1.95 16 25 C -0.18 -2.29 9.70 -39.01 -0.38 -2.67 16 26 C 0.14 1.62 11.16 -17.62 -0.20 1.42 16 27 N -0.53 -6.51 9.07 -12.48 -0.11 -6.62 16 28 H 0.08 0.59 5.28 -51.93 -0.27 0.32 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 33 H 0.08 0.68 7.36 -51.93 -0.38 0.29 16 34 H 0.15 1.73 5.41 -52.49 -0.28 1.44 16 35 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 36 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 37 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.13 3.42 6.14 -52.49 -0.32 3.10 16 39 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 40 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.15 1.95 7.71 -52.49 -0.40 1.54 16 43 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -29.42 369.66 -9.78 -39.21 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.43 Total: 6.07 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -4.03 Total: -15.02 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: -0.17 Total: -33.01 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.70 Total: -16.19 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.42 -9.78 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776215335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.881 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds