Wall clock time and date at job start Tue Mar 31 2020 14:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99610 * 2 1 4 4 C 1.39022 * 120.00049 * 179.97438 * 2 1 3 5 5 C 1.39125 * 119.64551 * 0.56437 * 4 2 1 6 6 C 1.39539 * 118.92353 * 180.29701 * 5 4 2 7 7 C 1.48057 * 120.88683 * 179.72225 * 6 5 4 8 8 O 1.21429 * 120.00148 * 359.97438 * 7 6 5 9 9 O 1.34670 * 120.00182 * 179.97438 * 7 6 5 10 10 C 1.45206 * 117.00053 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.46987 * 180.02562 * 10 9 7 12 12 C 1.38632 * 119.74997 * 269.72769 * 11 10 9 13 13 C 1.37617 * 120.24938 * 179.72472 * 12 11 10 14 14 C 1.40714 * 119.74673 * 0.56472 * 13 12 11 15 15 C 1.41392 * 120.24770 * 179.68477 * 14 13 12 16 16 H 1.08001 * 119.99893 * 214.38186 * 15 14 13 17 17 C 1.39942 * 119.99775 * 34.38070 * 15 14 13 18 18 N 1.30821 * 120.00500 * 356.34093 * 17 15 14 19 19 Si 1.86806 * 119.99798 * 176.34398 * 17 15 14 20 20 H 1.48499 * 109.47227 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47113 * 120.00155 * 19 17 15 22 22 H 1.48497 * 109.47029 * 239.99942 * 19 17 15 23 23 C 1.40717 * 119.50897 * 359.70667 * 14 13 12 24 24 C 1.37622 * 119.74309 * 0.02562 * 23 14 13 25 25 C 1.40060 * 118.22423 * 359.45769 * 6 5 4 26 26 C 1.37942 * 119.17250 * 0.54338 * 25 6 5 27 27 N 1.31922 * 121.00541 * 359.71898 * 26 25 6 28 28 H 1.09000 * 109.47312 * 185.72934 * 1 2 3 29 29 H 1.08994 * 109.47512 * 305.73182 * 1 2 3 30 30 H 1.09003 * 109.47260 * 65.73159 * 1 2 3 31 31 H 1.08998 * 109.47015 * 269.99521 * 3 2 1 32 32 H 1.08997 * 109.47100 * 29.99836 * 3 2 1 33 33 H 1.09005 * 109.46883 * 149.99813 * 3 2 1 34 34 H 1.08001 * 120.53842 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.46874 * 299.99596 * 10 9 7 36 36 H 1.08996 * 109.47168 * 60.00366 * 10 9 7 37 37 H 1.08001 * 119.87285 * 359.97438 * 12 11 10 38 38 H 1.08001 * 120.12556 * 180.28099 * 13 12 11 39 39 H 0.97004 * 120.00583 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.12972 * 179.97438 * 23 14 13 41 41 H 1.08009 * 119.87166 * 179.97438 * 24 23 14 42 42 H 1.08001 * 120.41076 * 180.25953 * 25 6 5 43 43 H 1.08006 * 119.49650 * 179.74133 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1601 -1.2040 0.0005 5 6 1.4571 -2.4045 -0.0108 6 6 2.1699 -3.6040 -0.0038 7 6 1.4659 -4.9065 -0.0092 8 8 0.2521 -4.9406 -0.0194 9 8 2.1717 -6.0535 -0.0028 10 6 1.4153 -7.2930 -0.0081 11 6 2.3664 -8.4619 0.0010 12 6 2.8063 -9.0001 -1.1985 13 6 3.6793 -10.0639 -1.2022 14 6 4.1161 -10.6129 0.0176 15 6 5.0077 -11.7102 0.0260 16 1 4.9319 -12.4617 0.7980 17 6 5.9885 -11.8225 -0.9659 18 7 6.0352 -10.9519 -1.9412 19 14 7.2310 -13.2157 -0.8973 20 1 6.9654 -14.0576 0.2968 21 1 7.1138 -14.0444 -2.1240 22 1 8.6022 -12.6522 -0.8099 23 6 3.6586 -10.0621 1.2289 24 6 2.7901 -8.9947 1.2086 25 6 3.5692 -3.5430 0.0028 26 6 4.1884 -2.3105 0.0136 27 7 3.4831 -1.1956 0.0122 28 1 -0.3634 -1.0225 0.1026 29 1 -0.3634 0.6001 0.8341 30 1 -0.3634 0.4224 -0.9369 31 1 2.3791 1.5834 -1.0276 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1385 0.5139 34 1 0.3771 -2.4079 -0.0205 35 1 0.7803 -7.3349 0.8769 36 1 0.7947 -7.3360 -0.9031 37 1 2.4657 -8.5803 -2.1335 38 1 4.0243 -10.4787 -2.1378 39 1 6.7147 -11.0299 -2.6290 40 1 3.9870 -10.4758 2.1709 41 1 2.4372 -8.5705 2.1372 42 1 4.1559 -4.4498 0.0042 43 1 5.2671 -2.2574 0.0230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776215335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:29 Heat of formation + Delta-G solvation = -26.261903 kcal Electronic energy + Delta-G solvation = -25697.951487 eV Core-core repulsion = 21900.863871 eV Total energy + Delta-G solvation = -3797.087616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90790 -40.89842 -39.48775 -37.61113 -37.48169 -35.62206 -33.90339 -32.53828 -31.51369 -31.24204 -29.35217 -28.90213 -26.59046 -26.07919 -24.93315 -23.26818 -22.93907 -21.93243 -21.67527 -19.33166 -19.24513 -18.48270 -17.52942 -17.34410 -17.21683 -16.90948 -16.71805 -16.28854 -15.93218 -15.64553 -15.45367 -15.22597 -15.01789 -14.49859 -14.44428 -14.04250 -13.92515 -13.85504 -13.53424 -13.35866 -13.19528 -13.01348 -12.84332 -12.72543 -12.59587 -12.54992 -12.11166 -11.89842 -11.75534 -11.51269 -11.30216 -11.21650 -11.09320 -10.88253 -10.60988 -9.43271 -9.21912 -8.59106 -8.54431 -6.44071 -0.50257 0.22440 0.67433 1.09807 1.40163 1.40311 1.46178 1.54953 1.71066 1.99511 2.22620 2.76721 2.80563 3.43304 3.50576 3.70810 3.82373 3.96381 4.02991 4.08569 4.11123 4.35333 4.36787 4.46394 4.49779 4.54182 4.55742 4.61708 4.75386 4.78528 4.88898 4.99664 5.01546 5.12986 5.15293 5.28429 5.33120 5.40599 5.42594 5.67555 5.85724 5.92294 6.08481 6.13828 6.24397 6.33848 6.57253 6.67279 6.92435 6.97694 6.99285 8.38171 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.002188 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.405138 B =12793.217746 C =13571.724335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.619 5.619 3 C 0.099 3.901 4 C 0.388 3.612 5 C -0.188 4.188 6 C -0.047 4.047 7 C 0.506 3.494 8 O -0.527 6.527 9 O -0.348 6.348 10 C 0.138 3.862 11 C -0.216 4.216 12 C -0.086 4.086 13 C -0.180 4.180 14 C 0.082 3.918 15 C -0.495 4.495 16 H 0.077 0.923 17 C 0.027 3.973 18 N -0.836 5.836 19 Si 0.990 3.010 20 H -0.258 1.258 21 H -0.266 1.266 22 H -0.267 1.267 23 C -0.230 4.230 24 C -0.072 4.072 25 C -0.187 4.187 26 C 0.150 3.850 27 N -0.534 5.534 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.153 0.847 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.286 0.714 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.149 0.851 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.925 20.386 2.480 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.333 5.333 3 C -0.043 4.043 4 C 0.153 3.847 5 C -0.213 4.213 6 C -0.056 4.056 7 C 0.351 3.649 8 O -0.418 6.418 9 O -0.265 6.265 10 C 0.066 3.934 11 C -0.217 4.217 12 C -0.105 4.105 13 C -0.200 4.200 14 C 0.079 3.921 15 C -0.525 4.525 16 H 0.096 0.904 17 C -0.186 4.186 18 N -0.464 5.464 19 Si 0.811 3.189 20 H -0.181 1.181 21 H -0.190 1.190 22 H -0.192 1.192 23 C -0.250 4.250 24 C -0.091 4.091 25 C -0.210 4.210 26 C -0.007 4.007 27 N -0.253 5.253 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.171 0.829 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.138 0.862 42 H 0.166 0.834 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.863 21.357 2.276 22.264 hybrid contribution 0.030 -1.670 -0.221 1.685 sum -5.832 19.687 2.055 20.635 Atomic orbital electron populations 1.22016 0.76800 1.03875 1.03245 1.46485 1.06258 1.02609 1.77968 1.21654 0.97466 0.83400 1.01787 1.18345 0.88403 0.86401 0.91530 1.21605 1.01960 0.89987 1.07704 1.19292 0.94564 0.89676 1.02020 1.21469 0.85616 0.85481 0.72298 1.90765 1.15529 1.88636 1.46852 1.86720 1.42091 1.14956 1.82695 1.21708 0.91667 0.77564 1.02453 1.19032 1.08623 1.00402 0.93617 1.20853 0.96748 0.96226 0.96630 1.21528 0.99609 0.99995 0.98861 1.18111 0.89794 0.92375 0.91773 1.19886 1.13690 1.08064 1.10834 0.90445 1.26802 1.00031 0.98746 0.93010 1.69831 1.32145 1.33949 1.10427 0.85035 0.77112 0.77403 0.79390 1.18142 1.19046 1.19230 1.21316 1.05615 1.00886 0.97165 1.20746 0.96060 0.95596 0.96657 1.22324 0.93195 1.01249 1.04236 1.22920 1.01276 0.85371 0.91100 1.67135 1.06099 1.32824 1.19257 0.90614 0.89887 0.90948 0.93116 0.89315 0.91327 0.82913 0.90296 0.90849 0.87474 0.86954 0.90352 0.87639 0.86180 0.83368 0.78799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.60 127.77 1.35 2.29 16 2 N -0.62 -10.58 3.39 -754.04 -2.56 -13.14 16 3 C 0.10 1.27 10.51 127.77 1.34 2.62 16 4 C 0.39 8.83 7.38 133.08 0.98 9.81 16 5 C -0.19 -4.61 8.89 22.80 0.20 -4.41 16 6 C -0.05 -1.30 5.90 -19.92 -0.12 -1.42 16 7 C 0.51 16.61 7.92 70.43 0.56 17.17 16 8 O -0.53 -18.65 16.23 20.06 0.33 -18.33 16 9 O -0.35 -12.44 9.56 -55.79 -0.53 -12.98 16 10 C 0.14 4.95 5.59 71.24 0.40 5.35 16 11 C -0.22 -9.12 5.54 -19.68 -0.11 -9.23 16 12 C -0.09 -3.97 9.67 22.22 0.21 -3.75 16 13 C -0.18 -9.44 8.67 22.73 0.20 -9.25 16 14 C 0.08 4.37 5.55 -21.29 -0.12 4.25 16 15 C -0.49 -26.35 9.05 23.46 0.21 -26.14 16 16 H 0.08 3.96 7.85 -2.91 -0.02 3.94 16 17 C 0.03 1.35 5.42 85.26 0.46 1.81 16 18 N -0.84 -43.59 10.60 21.83 0.23 -43.35 16 19 Si 0.99 38.10 29.56 68.60 2.03 40.13 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 21 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 23 C -0.23 -11.06 9.80 22.73 0.22 -10.83 16 24 C -0.07 -3.10 9.67 22.22 0.21 -2.88 16 25 C -0.19 -4.68 9.70 22.64 0.22 -4.46 16 26 C 0.15 3.18 11.16 84.61 0.94 4.13 16 27 N -0.53 -12.34 9.07 -193.41 -1.75 -14.10 16 28 H 0.08 0.96 5.28 -2.39 -0.01 0.95 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.68 8.07 -2.39 -0.02 0.66 16 33 H 0.07 1.04 7.36 -2.38 -0.02 1.03 16 34 H 0.15 3.45 5.41 -2.91 -0.02 3.44 16 35 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 36 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 37 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.11 6.20 6.14 -2.91 -0.02 6.18 16 39 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 40 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 42 H 0.15 3.75 7.71 -2.91 -0.02 3.73 16 43 H 0.20 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -64.19 369.66 5.95 -58.24 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 1.03 Total: 28.49 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 7.18 Total: -24.96 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -4.08 Total: -70.59 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.21 Total: -31.30 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -64.19 5.95 -58.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776215335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.974 kcal (2) G-P(sol) polarization free energy of solvation -64.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds