Wall clock time and date at job start Tue Mar 31 2020 14:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35671 * 117.00302 * 2 1 4 4 C 1.38917 * 119.68496 * 180.02562 * 3 2 1 5 5 C 1.38377 * 119.11515 * 180.02562 * 4 3 2 6 6 C 1.38832 * 118.48209 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.35734 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47388 * 89.99910 * 7 6 5 9 9 C 1.34776 * 120.00360 * 180.27661 * 8 7 6 10 10 O 1.21284 * 119.99764 * 359.72795 * 9 8 7 11 11 C 1.50700 * 119.99945 * 179.72581 * 9 8 7 12 12 C 1.50699 * 109.47124 * 179.97438 * 11 9 8 13 13 C 1.37636 * 120.13252 * 265.00416 * 12 11 9 14 14 C 1.38615 * 120.25010 * 179.97438 * 13 12 11 15 15 C 1.38646 * 120.50055 * 0.02562 * 14 13 12 16 16 C 1.37601 * 120.25237 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.12737 * 84.72807 * 12 11 9 18 18 C 1.41402 * 120.24220 * 359.97438 * 17 12 11 19 19 H 1.08003 * 119.99948 * 333.90514 * 18 17 12 20 20 C 1.39939 * 120.00041 * 153.89537 * 18 17 12 21 21 N 1.30820 * 120.00325 * 343.72001 * 20 18 17 22 22 Si 1.86802 * 120.00107 * 163.71099 * 20 18 17 23 23 H 1.48507 * 109.47031 * 90.00416 * 22 20 18 24 24 H 1.48499 * 109.47549 * 210.00331 * 22 20 18 25 25 H 1.48505 * 109.47135 * 330.00641 * 22 20 18 26 26 C 1.38051 * 119.28947 * 0.25526 * 6 5 4 27 27 N 1.31965 * 120.83224 * 359.45701 * 26 6 5 28 28 H 1.09001 * 109.46823 * 59.99731 * 1 2 3 29 29 H 1.09001 * 109.47702 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47130 * 300.00022 * 1 2 3 31 31 H 1.08000 * 120.44649 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.76058 * 180.02562 * 5 4 3 33 33 H 1.09007 * 109.47296 * 330.00302 * 7 6 5 34 34 H 1.09006 * 109.47543 * 210.00395 * 7 6 5 35 35 H 0.97001 * 119.99469 * 0.02562 * 8 7 6 36 36 H 1.08997 * 109.47364 * 300.00211 * 11 9 8 37 37 H 1.09005 * 109.47182 * 60.00268 * 11 9 8 38 38 H 1.08002 * 119.87121 * 359.97438 * 13 12 11 39 39 H 1.08003 * 119.74640 * 179.97438 * 14 13 12 40 40 H 1.08006 * 119.87672 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.12939 * 179.97438 * 16 15 14 42 42 H 0.96999 * 120.00801 * 179.97438 * 21 20 18 43 43 H 1.07993 * 119.58140 * 179.71942 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0486 2.5129 0.0000 6 6 3.2506 3.6490 0.0005 7 6 3.8769 5.0196 0.0017 8 7 4.0804 5.4648 -1.3791 9 6 4.6363 6.6678 -1.6243 10 8 4.9636 7.3840 -0.7018 11 6 4.8513 7.1230 -3.0448 12 6 5.4821 8.4917 -3.0436 13 6 4.6947 9.6155 -3.1506 14 6 5.2722 10.8755 -3.1493 15 6 6.6470 11.0194 -3.0410 16 6 7.4538 9.9099 -2.9339 17 6 6.8778 8.6259 -2.9273 18 6 7.6963 7.4788 -2.8103 19 1 7.2921 6.5670 -2.3960 20 6 9.0300 7.5249 -3.2316 21 7 9.4364 8.4931 -4.0119 22 14 10.2301 6.2042 -2.6795 23 1 10.2199 5.0862 -3.6569 24 1 11.5969 6.7793 -2.5997 25 1 9.8277 5.6970 -1.3430 26 6 1.8772 3.5096 0.0059 27 7 1.3187 2.3140 -0.0003 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0229 0.3694 -0.0014 32 1 5.1255 2.5944 -0.0008 33 1 4.8373 4.9798 0.5158 34 1 3.2183 5.7197 0.5159 35 1 3.8184 4.8921 -2.1168 36 1 5.5087 6.4200 -3.5561 37 1 3.8925 7.1657 -3.5617 38 1 3.6227 9.5150 -3.2360 39 1 4.6467 11.7519 -3.2342 40 1 7.0863 12.0061 -3.0406 41 1 8.5245 10.0242 -2.8501 42 1 10.3609 8.5253 -4.3037 43 1 1.2520 4.3901 0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776779203.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:56 Heat of formation + Delta-G solvation = -23.342097 kcal Electronic energy + Delta-G solvation = -26121.934473 eV Core-core repulsion = 22324.973469 eV Total energy + Delta-G solvation = -3796.961004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.95676 -39.24776 -38.27981 -37.27073 -34.71292 -33.59368 -32.69222 -31.83990 -31.03761 -29.42259 -27.99336 -27.04954 -25.58983 -24.75216 -23.73102 -22.14498 -20.90790 -20.52694 -19.32857 -18.70153 -17.40444 -17.17979 -16.67507 -16.32406 -15.85312 -15.36897 -14.97771 -14.90377 -14.64055 -14.43657 -14.41089 -13.70671 -13.49584 -13.46057 -13.37145 -12.97193 -12.58787 -12.48284 -12.25806 -11.89339 -11.67756 -11.55074 -11.48350 -11.12989 -10.98501 -10.95075 -10.68165 -10.37849 -10.21258 -9.92722 -9.45624 -9.35785 -9.27293 -9.13024 -8.73691 -8.67515 -7.27967 -7.26055 -6.70954 -4.31462 0.80768 0.95159 2.77779 2.80924 2.99748 3.07805 3.12546 3.29044 3.34985 3.37467 3.88542 3.95285 4.01568 4.48628 4.68849 4.69439 4.70082 4.84737 4.99292 4.99587 5.27569 5.32070 5.45684 5.56477 5.64143 5.75708 5.85387 6.03851 6.08389 6.12603 6.18283 6.31681 6.46038 6.54181 6.74069 6.83256 6.90236 7.11275 7.32791 7.45459 7.52796 7.67091 7.89732 7.97915 8.10468 8.16252 8.34555 8.67699 8.86570 8.94627 9.04698 10.23198 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002810 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.275106 B = 9961.268569 C =11456.122755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.191 4.191 5 C -0.022 4.022 6 C -0.189 4.189 7 C 0.171 3.829 8 N -0.743 5.743 9 C 0.515 3.485 10 O -0.519 6.519 11 C -0.070 4.070 12 C -0.181 4.181 13 C -0.081 4.081 14 C -0.240 4.240 15 C -0.107 4.107 16 C -0.159 4.159 17 C 0.129 3.871 18 C -0.455 4.455 19 H 0.074 0.926 20 C 0.076 3.924 21 N -0.796 5.796 22 Si 0.902 3.098 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.262 1.262 26 C 0.158 3.842 27 N -0.541 5.541 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.396 0.604 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.279 0.721 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.058 -14.783 5.081 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.211 4.211 5 C -0.048 4.048 6 C -0.192 4.192 7 C 0.047 3.953 8 N -0.398 5.398 9 C 0.303 3.697 10 O -0.393 6.393 11 C -0.110 4.110 12 C -0.183 4.183 13 C -0.100 4.100 14 C -0.259 4.259 15 C -0.126 4.126 16 C -0.179 4.179 17 C 0.126 3.874 18 C -0.485 4.485 19 H 0.092 0.908 20 C -0.141 4.141 21 N -0.421 5.421 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.186 1.186 26 C 0.001 3.999 27 N -0.265 5.265 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.229 0.771 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.090 0.910 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.404 -14.511 5.639 19.906 hybrid contribution 1.116 -0.711 -0.133 1.330 sum -11.287 -15.223 5.507 19.735 Atomic orbital electron populations 1.22863 0.77153 1.02928 1.02561 1.86238 1.23005 1.24638 1.87743 1.19906 0.89480 0.84732 0.91793 1.21089 0.91962 0.99635 1.08441 1.21454 1.00955 0.90574 0.91799 1.20830 0.94877 0.96332 1.07159 1.19914 1.00477 0.89823 0.85113 1.46244 1.66215 1.20111 1.07265 1.21275 0.75701 0.79885 0.92888 1.90690 1.48312 1.53859 1.46413 1.20262 1.00775 0.98007 0.91940 1.19060 0.94066 0.91199 1.13974 1.20299 0.96534 0.92841 1.00279 1.20307 0.94574 0.95451 1.15585 1.20675 0.93707 0.97069 1.01121 1.21296 0.99339 0.91660 1.05574 1.17340 0.90172 0.92943 0.86929 1.19448 0.94496 0.98208 1.36375 0.90820 1.25876 0.99066 0.96389 0.92742 1.69816 1.17972 1.30291 1.24070 0.86419 0.79522 0.81105 0.80324 1.19573 1.20118 1.18554 1.22388 0.92205 0.93625 0.91636 1.67363 1.40806 0.98739 1.19546 0.92214 0.88653 0.92263 0.83955 0.83658 0.90695 0.90784 0.77052 0.88587 0.90620 0.89768 0.89684 0.89610 0.86533 0.90998 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.31 -3.15 10.48 -18.71 -0.20 -3.34 16 3 C 0.32 3.47 7.49 -17.12 -0.13 3.34 16 4 C -0.19 -1.82 10.04 -39.28 -0.39 -2.22 16 5 C -0.02 -0.21 9.85 -39.31 -0.39 -0.60 16 6 C -0.19 -1.91 5.27 -104.47 -0.55 -2.46 16 7 C 0.17 2.07 5.82 -5.20 -0.03 2.04 16 8 N -0.74 -10.19 5.55 -61.47 -0.34 -10.53 16 9 C 0.51 9.67 7.44 -10.99 -0.08 9.59 16 10 O -0.52 -12.12 16.03 5.55 0.09 -12.03 16 11 C -0.07 -1.35 5.18 -29.04 -0.15 -1.50 16 12 C -0.18 -4.34 4.43 -103.91 -0.46 -4.80 16 13 C -0.08 -1.87 9.66 -39.66 -0.38 -2.26 16 14 C -0.24 -5.61 10.05 -39.29 -0.39 -6.00 16 15 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 16 C -0.16 -4.27 8.69 -38.87 -0.34 -4.61 16 17 C 0.13 3.43 5.56 -106.82 -0.59 2.84 16 18 C -0.46 -11.90 8.14 -37.74 -0.31 -12.21 16 19 H 0.07 1.86 6.67 -52.48 -0.35 1.51 16 20 C 0.08 1.91 5.16 -17.35 -0.09 1.82 16 21 N -0.80 -20.53 10.95 55.55 0.61 -19.92 16 22 Si 0.90 18.71 29.59 -169.99 -5.03 13.68 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 26 C 0.16 1.58 10.85 -17.56 -0.19 1.39 16 27 N -0.54 -5.98 9.22 -13.33 -0.12 -6.10 16 28 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.40 4.44 8.46 -40.82 -0.35 4.10 16 36 H 0.10 1.81 7.08 -51.93 -0.37 1.45 16 37 H 0.08 1.21 8.05 -51.93 -0.42 0.80 16 38 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 41 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 42 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 43 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -31.99 370.83 -8.82 -40.80 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.58 Total: 9.17 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -3.83 Total: -17.32 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.14 Total: -36.55 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.11 Total: -15.38 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.99 -8.82 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776779203.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.460 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds