Wall clock time and date at job start Tue Mar 31 2020 14:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35671 * 117.00302 * 2 1 4 4 C 1.38917 * 119.68496 * 180.02562 * 3 2 1 5 5 C 1.38377 * 119.11515 * 180.02562 * 4 3 2 6 6 C 1.38832 * 118.48209 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.35734 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47388 * 89.99910 * 7 6 5 9 9 C 1.34776 * 120.00360 * 180.27661 * 8 7 6 10 10 O 1.21284 * 119.99764 * 359.72795 * 9 8 7 11 11 C 1.50700 * 119.99945 * 179.72581 * 9 8 7 12 12 C 1.50699 * 109.47124 * 179.97438 * 11 9 8 13 13 C 1.37636 * 120.13252 * 265.00416 * 12 11 9 14 14 C 1.38615 * 120.25010 * 179.97438 * 13 12 11 15 15 C 1.38646 * 120.50055 * 0.02562 * 14 13 12 16 16 C 1.37601 * 120.25237 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.12737 * 84.72807 * 12 11 9 18 18 C 1.41402 * 120.24220 * 359.97438 * 17 12 11 19 19 H 1.08003 * 119.99948 * 333.90514 * 18 17 12 20 20 C 1.39939 * 120.00041 * 153.89537 * 18 17 12 21 21 N 1.30820 * 120.00325 * 343.72001 * 20 18 17 22 22 Si 1.86802 * 120.00107 * 163.71099 * 20 18 17 23 23 H 1.48507 * 109.47031 * 90.00416 * 22 20 18 24 24 H 1.48499 * 109.47549 * 210.00331 * 22 20 18 25 25 H 1.48505 * 109.47135 * 330.00641 * 22 20 18 26 26 C 1.38051 * 119.28947 * 0.25526 * 6 5 4 27 27 N 1.31965 * 120.83224 * 359.45701 * 26 6 5 28 28 H 1.09001 * 109.46823 * 59.99731 * 1 2 3 29 29 H 1.09001 * 109.47702 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47130 * 300.00022 * 1 2 3 31 31 H 1.08000 * 120.44649 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.76058 * 180.02562 * 5 4 3 33 33 H 1.09007 * 109.47296 * 330.00302 * 7 6 5 34 34 H 1.09006 * 109.47543 * 210.00395 * 7 6 5 35 35 H 0.97001 * 119.99469 * 0.02562 * 8 7 6 36 36 H 1.08997 * 109.47364 * 300.00211 * 11 9 8 37 37 H 1.09005 * 109.47182 * 60.00268 * 11 9 8 38 38 H 1.08002 * 119.87121 * 359.97438 * 13 12 11 39 39 H 1.08003 * 119.74640 * 179.97438 * 14 13 12 40 40 H 1.08006 * 119.87672 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.12939 * 179.97438 * 16 15 14 42 42 H 0.96999 * 120.00801 * 179.97438 * 21 20 18 43 43 H 1.07993 * 119.58140 * 179.71942 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0486 2.5129 0.0000 6 6 3.2506 3.6490 0.0005 7 6 3.8769 5.0196 0.0017 8 7 4.0804 5.4648 -1.3791 9 6 4.6363 6.6678 -1.6243 10 8 4.9636 7.3840 -0.7018 11 6 4.8513 7.1230 -3.0448 12 6 5.4821 8.4917 -3.0436 13 6 4.6947 9.6155 -3.1506 14 6 5.2722 10.8755 -3.1493 15 6 6.6470 11.0194 -3.0410 16 6 7.4538 9.9099 -2.9339 17 6 6.8778 8.6259 -2.9273 18 6 7.6963 7.4788 -2.8103 19 1 7.2921 6.5670 -2.3960 20 6 9.0300 7.5249 -3.2316 21 7 9.4364 8.4931 -4.0119 22 14 10.2301 6.2042 -2.6795 23 1 10.2199 5.0862 -3.6569 24 1 11.5969 6.7793 -2.5997 25 1 9.8277 5.6970 -1.3430 26 6 1.8772 3.5096 0.0059 27 7 1.3187 2.3140 -0.0003 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0229 0.3694 -0.0014 32 1 5.1255 2.5944 -0.0008 33 1 4.8373 4.9798 0.5158 34 1 3.2183 5.7197 0.5159 35 1 3.8184 4.8921 -2.1168 36 1 5.5087 6.4200 -3.5561 37 1 3.8925 7.1657 -3.5617 38 1 3.6227 9.5150 -3.2360 39 1 4.6467 11.7519 -3.2342 40 1 7.0863 12.0061 -3.0406 41 1 8.5245 10.0242 -2.8501 42 1 10.3609 8.5253 -4.3037 43 1 1.2520 4.3901 0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776779203.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:55 Heat of formation + Delta-G solvation = -44.189979 kcal Electronic energy + Delta-G solvation = -26122.838505 eV Core-core repulsion = 22324.973469 eV Total energy + Delta-G solvation = -3797.865036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.73520 -40.68644 -39.26412 -38.85636 -35.90592 -35.46963 -33.63556 -33.32869 -32.09233 -31.30559 -29.02137 -28.22913 -27.06718 -26.21789 -24.47220 -23.04606 -22.78684 -22.05841 -20.94337 -19.41965 -19.04888 -18.16573 -18.00197 -17.35892 -17.07715 -16.92297 -16.30901 -16.14573 -15.75940 -15.46187 -15.38733 -15.32117 -15.00598 -14.55155 -14.35008 -14.28072 -14.06689 -13.74280 -13.49091 -13.34228 -12.96671 -12.86353 -12.71517 -12.62343 -12.57225 -12.45664 -12.17366 -12.10897 -11.29417 -11.18720 -11.03494 -10.99288 -10.75107 -10.67619 -9.98564 -9.51510 -9.19660 -9.12429 -8.56625 -6.26140 0.02052 0.19977 1.02601 1.16657 1.37907 1.49178 1.56167 1.88780 2.10677 2.22035 2.37396 2.79548 2.86823 3.28862 3.63697 3.80424 3.90466 3.96088 4.14405 4.20487 4.43102 4.43248 4.44874 4.49294 4.54936 4.65564 4.73099 4.74784 4.77409 4.80994 4.86069 4.90202 5.10556 5.23038 5.26484 5.39043 5.39886 5.54801 5.58162 5.80827 6.06896 6.18129 6.20019 6.24431 6.45053 6.68129 6.76444 6.78876 7.02382 7.14627 7.48201 8.39785 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002810 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.275106 B = 9961.268569 C =11456.122755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.320 6.320 3 C 0.307 3.693 4 C -0.192 4.192 5 C -0.020 4.020 6 C -0.189 4.189 7 C 0.175 3.825 8 N -0.721 5.721 9 C 0.519 3.481 10 O -0.572 6.572 11 C -0.070 4.070 12 C -0.187 4.187 13 C -0.091 4.091 14 C -0.244 4.244 15 C -0.118 4.118 16 C -0.195 4.195 17 C 0.095 3.905 18 C -0.480 4.480 19 H 0.073 0.927 20 C 0.034 3.966 21 N -0.828 5.828 22 Si 0.971 3.029 23 H -0.255 1.255 24 H -0.271 1.271 25 H -0.265 1.265 26 C 0.157 3.843 27 N -0.554 5.554 28 H 0.056 0.944 29 H 0.122 0.878 30 H 0.056 0.944 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.285 0.715 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.367 -16.627 5.037 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.227 6.227 3 C 0.129 3.871 4 C -0.213 4.213 5 C -0.046 4.046 6 C -0.192 4.192 7 C 0.052 3.948 8 N -0.375 5.375 9 C 0.307 3.693 10 O -0.450 6.450 11 C -0.109 4.109 12 C -0.189 4.189 13 C -0.109 4.109 14 C -0.263 4.263 15 C -0.137 4.137 16 C -0.214 4.214 17 C 0.093 3.907 18 C -0.510 4.510 19 H 0.092 0.908 20 C -0.180 4.180 21 N -0.455 5.455 22 Si 0.793 3.207 23 H -0.180 1.180 24 H -0.196 1.196 25 H -0.189 1.189 26 C 0.001 3.999 27 N -0.278 5.278 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.075 0.925 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.751 -16.402 5.570 22.117 hybrid contribution 1.379 -0.137 -0.123 1.391 sum -12.373 -16.539 5.447 21.361 Atomic orbital electron populations 1.23055 0.75843 1.04643 1.02267 1.86229 1.24382 1.24441 1.87615 1.20205 0.90140 0.84947 0.91847 1.21297 0.91736 1.00317 1.07904 1.21628 1.01613 0.90328 0.91016 1.20590 0.94959 0.95303 1.08308 1.19897 1.00197 0.90999 0.83744 1.45994 1.64152 1.18559 1.08790 1.21082 0.75493 0.80771 0.91967 1.90675 1.50984 1.55776 1.47599 1.20281 1.02212 0.95585 0.92871 1.19565 0.93433 0.93924 1.11992 1.20745 0.98279 0.92498 0.99423 1.20721 0.94347 0.96946 1.14302 1.20942 0.94515 0.97329 1.00865 1.21309 0.98803 0.93012 1.08308 1.17753 0.91930 0.93117 0.87938 1.19613 0.95628 0.98236 1.37497 0.90840 1.26691 1.00380 0.98610 0.92304 1.69885 1.18633 1.32018 1.24936 0.85365 0.77079 0.78559 0.79723 1.17969 1.19568 1.18884 1.22619 0.92356 0.93901 0.91033 1.67392 1.41198 0.99058 1.20161 0.92509 0.86020 0.92502 0.82277 0.82405 0.91686 0.90708 0.75242 0.88496 0.86981 0.86474 0.86769 0.87829 0.88596 0.90455 0.80678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 113.37 1.18 1.65 16 2 O -0.32 -5.99 10.48 -89.88 -0.94 -6.94 16 3 C 0.31 6.16 7.49 84.79 0.63 6.79 16 4 C -0.19 -3.29 10.04 22.47 0.23 -3.06 16 5 C -0.02 -0.34 9.85 22.45 0.22 -0.12 16 6 C -0.19 -3.46 5.27 -19.77 -0.10 -3.56 16 7 C 0.18 4.00 5.82 85.63 0.50 4.50 16 8 N -0.72 -18.45 5.55 -466.78 -2.59 -21.04 16 9 C 0.52 18.93 7.44 87.66 0.65 19.59 16 10 O -0.57 -26.77 16.03 -3.04 -0.05 -26.82 16 11 C -0.07 -2.59 5.18 29.10 0.15 -2.44 16 12 C -0.19 -8.92 4.43 -19.41 -0.09 -9.01 16 13 C -0.09 -4.09 9.66 22.22 0.21 -3.87 16 14 C -0.24 -11.14 10.05 22.46 0.23 -10.91 16 15 C -0.12 -5.86 10.02 22.22 0.22 -5.64 16 16 C -0.19 -10.83 8.69 22.73 0.20 -10.63 16 17 C 0.09 5.19 5.56 -21.29 -0.12 5.07 16 18 C -0.48 -25.65 8.14 23.46 0.19 -25.46 16 19 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 20 C 0.03 1.74 5.16 85.26 0.44 2.18 16 21 N -0.83 -43.98 10.95 21.82 0.24 -43.74 16 22 Si 0.97 38.65 29.59 68.60 2.03 40.68 16 23 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 26 C 0.16 2.85 10.85 84.63 0.92 3.77 16 27 N -0.55 -11.35 9.22 -308.96 -2.85 -14.20 16 28 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 29 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.06 1.66 8.10 -2.38 -0.02 1.64 16 34 H 0.07 1.74 8.09 -2.38 -0.02 1.72 16 35 H 0.41 8.16 8.46 -92.71 -0.78 7.38 16 36 H 0.10 3.57 7.08 -2.39 -0.02 3.55 16 37 H 0.11 3.25 8.05 -2.38 -0.02 3.24 16 38 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 41 H 0.10 5.58 6.20 -2.91 -0.02 5.57 16 42 H 0.28 13.76 8.30 -92.71 -0.77 12.99 16 43 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -70.97 370.83 1.76 -69.21 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.26 Total: 33.98 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 5.66 Total: -31.15 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -5.20 Total: -78.98 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.99 Total: -33.76 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -70.97 1.76 -69.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776779203.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.024 kcal (2) G-P(sol) polarization free energy of solvation -70.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds