Wall clock time and date at job start Tue Mar 31 2020 14:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35740 * 117.00019 * 2 1 4 4 C 1.38919 * 119.60751 * 179.97438 * 3 2 1 5 5 C 1.38322 * 119.18201 * 179.97438 * 4 3 2 6 6 C 1.39373 * 118.42950 * 359.97438 * 5 4 3 7 7 N 1.40136 * 120.42873 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00390 * 247.35497 * 7 6 5 9 9 C 1.34778 * 119.99983 * 67.35049 * 7 6 5 10 10 O 1.21294 * 120.00069 * 355.05924 * 9 7 6 11 11 C 1.50703 * 120.00268 * 175.05893 * 9 7 6 12 12 C 1.50695 * 109.47185 * 179.97438 * 11 9 7 13 13 C 1.37639 * 120.13346 * 265.30933 * 12 11 9 14 14 C 1.38614 * 120.25139 * 180.32510 * 13 12 11 15 15 C 1.38659 * 120.50070 * 359.66459 * 14 13 12 16 16 C 1.37600 * 120.24549 * 0.02562 * 15 14 13 17 17 C 1.40698 * 120.12633 * 85.00189 * 12 11 9 18 18 C 1.41402 * 120.24285 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99790 * 24.73306 * 18 17 12 20 20 C 1.39942 * 119.99948 * 204.74011 * 18 17 12 21 21 N 1.30823 * 120.00013 * 203.18846 * 20 18 17 22 22 Si 1.86804 * 120.00379 * 23.18236 * 20 18 17 23 23 H 1.48493 * 109.47441 * 270.00576 * 22 20 18 24 24 H 1.48503 * 109.46802 * 30.00359 * 22 20 18 25 25 H 1.48501 * 109.47203 * 149.99811 * 22 20 18 26 26 C 1.38660 * 119.15027 * 0.25745 * 6 5 4 27 27 N 1.31952 * 120.73442 * 359.45169 * 26 6 5 28 28 H 1.08997 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46982 * 300.00286 * 1 2 3 30 30 H 1.09001 * 109.46820 * 60.00347 * 1 2 3 31 31 H 1.07992 * 120.40820 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.78438 * 180.02562 * 5 4 3 33 33 H 1.08992 * 109.47127 * 269.99606 * 8 7 6 34 34 H 1.09001 * 109.46733 * 29.99545 * 8 7 6 35 35 H 1.08999 * 109.47454 * 149.99259 * 8 7 6 36 36 H 1.09004 * 109.46872 * 60.00263 * 11 9 7 37 37 H 1.08993 * 109.46989 * 300.00488 * 11 9 7 38 38 H 1.08000 * 119.87500 * 0.02562 * 13 12 11 39 39 H 1.07994 * 119.75001 * 179.69312 * 14 13 12 40 40 H 1.07996 * 119.88162 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.12856 * 180.02562 * 16 15 14 42 42 H 0.97005 * 119.99940 * 354.96187 * 21 20 18 43 43 H 1.07999 * 119.63305 * 179.72341 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.4330 1.2726 0.0005 5 6 4.0518 2.5097 0.0000 6 6 3.2525 3.6515 -0.0016 7 7 3.8353 4.9259 -0.0017 8 6 3.6944 5.7960 1.1685 9 6 4.5256 5.3512 -1.0783 10 8 4.7190 4.5995 -2.0104 11 6 5.0572 6.7606 -1.1241 12 6 5.7859 6.9806 -2.4247 13 6 7.1499 6.8084 -2.4903 14 6 7.8235 7.0167 -3.6837 15 6 7.1325 7.3934 -4.8254 16 6 5.7679 7.5652 -4.7846 17 6 5.0736 7.3566 -3.5784 18 6 3.6712 7.5296 -3.5247 19 1 3.1924 7.7705 -2.5872 20 6 2.9039 7.3885 -4.6865 21 7 1.7326 7.9651 -4.7708 22 14 3.5520 6.3769 -6.1169 23 1 4.3258 7.2532 -7.0326 24 1 4.4334 5.2986 -5.6014 25 1 2.4121 5.7745 -6.8538 26 6 1.8731 3.5103 0.0028 27 7 1.3177 2.3133 -0.0024 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.0214 0.3671 0.0005 32 1 5.1289 2.5890 0.0000 33 1 2.7975 6.4060 1.0618 34 1 3.6135 5.1852 2.0677 35 1 4.5673 6.4440 1.2468 36 1 5.7441 6.9170 -0.2923 37 1 4.2283 7.4641 -1.0480 38 1 7.6981 6.5146 -1.6074 39 1 8.8944 6.8841 -3.7248 40 1 7.6673 7.5526 -5.7500 41 1 5.2316 7.8583 -5.6751 42 1 1.3639 8.4290 -4.0028 43 1 1.2463 4.3897 0.0061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776868425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:33 Heat of formation + Delta-G solvation = -7.021533 kcal Electronic energy + Delta-G solvation = -27328.198435 eV Core-core repulsion = 23531.945144 eV Total energy + Delta-G solvation = -3796.253291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87323 -39.56322 -38.05970 -37.35470 -35.19117 -33.70063 -32.52064 -31.92194 -30.18103 -30.01140 -27.51430 -26.99347 -26.37931 -24.59322 -23.47163 -23.00110 -21.39453 -20.23478 -18.90003 -18.46805 -18.08024 -17.24768 -16.95765 -16.35207 -15.98942 -15.41634 -15.26032 -14.61822 -14.44607 -14.25801 -13.90074 -13.86840 -13.52034 -13.37202 -13.15207 -12.85912 -12.71058 -12.47571 -12.38312 -12.09703 -11.95775 -11.88250 -11.31431 -11.24861 -11.22219 -10.78979 -10.31381 -10.16194 -10.04532 -9.89314 -9.73952 -9.34657 -9.26155 -8.90495 -8.88798 -8.13766 -7.67591 -7.57981 -7.23612 -4.49473 1.07126 1.22605 2.57567 2.77722 2.96949 3.13797 3.22424 3.26111 3.44784 3.66299 3.70039 4.07533 4.27531 4.57837 4.86212 4.95764 5.02454 5.10941 5.18388 5.21164 5.22953 5.37450 5.48383 5.54863 5.61925 5.63867 5.69854 5.77258 5.86367 6.07731 6.11275 6.20162 6.22791 6.25102 6.55193 6.77623 6.83997 7.09261 7.18267 7.35813 7.48534 7.56464 7.68643 7.74511 7.78020 7.87558 8.02554 8.41027 8.62152 8.67378 8.79709 10.01882 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.004001 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.111867 B = 6996.501670 C = 7855.522063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.310 3.690 4 C -0.179 4.179 5 C -0.030 4.030 6 C 0.069 3.931 7 N -0.585 5.585 8 C 0.083 3.917 9 C 0.520 3.480 10 O -0.500 6.500 11 C -0.064 4.064 12 C -0.181 4.181 13 C -0.064 4.064 14 C -0.251 4.251 15 C -0.072 4.072 16 C -0.250 4.250 17 C 0.116 3.884 18 C -0.512 4.512 19 H 0.075 0.925 20 C 0.050 3.950 21 N -0.813 5.813 22 Si 1.068 2.932 23 H -0.277 1.277 24 H -0.259 1.259 25 H -0.292 1.292 26 C 0.140 3.860 27 N -0.530 5.530 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.285 0.715 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.002 -8.337 13.081 15.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.132 3.868 4 C -0.200 4.200 5 C -0.057 4.057 6 C -0.024 4.024 7 N -0.319 5.319 8 C -0.059 4.059 9 C 0.310 3.690 10 O -0.371 6.371 11 C -0.104 4.104 12 C -0.182 4.182 13 C -0.083 4.083 14 C -0.270 4.270 15 C -0.091 4.091 16 C -0.269 4.269 17 C 0.113 3.887 18 C -0.540 4.540 19 H 0.093 0.907 20 C -0.170 4.170 21 N -0.435 5.435 22 Si 0.894 3.106 23 H -0.204 1.204 24 H -0.183 1.183 25 H -0.219 1.219 26 C -0.017 4.017 27 N -0.253 5.253 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.096 0.904 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.132 -9.485 11.033 14.594 hybrid contribution 0.788 0.849 1.658 2.022 sum -0.344 -8.636 12.691 15.355 Atomic orbital electron populations 1.22840 0.77358 1.02734 1.02552 1.86231 1.22830 1.24540 1.88093 1.19815 0.89384 0.84657 0.92991 1.20941 0.91826 0.99091 1.08125 1.21546 1.00851 0.90557 0.92717 1.18417 0.92291 0.86108 1.05620 1.45573 1.55234 1.13640 1.17483 1.21833 1.02728 0.94354 0.87021 1.21341 0.76723 0.90495 0.80422 1.90715 1.55016 1.56410 1.34926 1.20283 1.00320 0.92188 0.97574 1.18952 0.92861 1.12005 0.94423 1.20393 0.93557 0.98013 0.96296 1.20293 0.97634 1.15125 0.93995 1.20601 0.94301 0.97661 0.96517 1.21142 0.94070 1.12897 0.98750 1.17462 0.93416 0.87248 0.90533 1.20528 0.92209 1.43705 0.97542 0.90704 1.27177 0.94413 0.93775 1.01678 1.70579 1.18545 1.22014 1.32345 0.83701 0.75294 0.77270 0.74310 1.20361 1.18333 1.21930 1.22524 0.91857 0.93851 0.93517 1.67297 1.40361 0.98405 1.19270 0.88784 0.92394 0.92197 0.83908 0.84077 0.92308 0.91316 0.90236 0.90288 0.88691 0.89291 0.89081 0.88952 0.87745 0.90418 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.31 -4.04 10.48 -18.93 -0.20 -4.24 16 3 C 0.31 4.48 7.49 -17.14 -0.13 4.35 16 4 C -0.18 -2.40 10.04 -39.30 -0.39 -2.79 16 5 C -0.03 -0.43 9.49 -39.13 -0.37 -0.80 16 6 C 0.07 1.06 4.84 -83.48 -0.40 0.66 16 7 N -0.59 -8.92 2.95 -120.67 -0.36 -9.27 16 8 C 0.08 0.86 10.12 59.85 0.61 1.47 16 9 C 0.52 10.12 7.56 -10.98 -0.08 10.04 16 10 O -0.50 -12.07 15.62 5.55 0.09 -11.98 16 11 C -0.06 -1.19 4.02 -29.04 -0.12 -1.31 16 12 C -0.18 -4.13 4.43 -103.91 -0.46 -4.59 16 13 C -0.06 -1.38 9.66 -39.66 -0.38 -1.76 16 14 C -0.25 -5.42 10.05 -39.29 -0.39 -5.82 16 15 C -0.07 -1.64 10.02 -39.66 -0.40 -2.04 16 16 C -0.25 -6.26 7.42 -38.87 -0.29 -6.54 16 17 C 0.12 2.99 5.19 -106.82 -0.55 2.43 16 18 C -0.51 -13.60 8.83 -37.74 -0.33 -13.93 16 19 H 0.07 1.97 6.50 -52.49 -0.34 1.63 16 20 C 0.05 1.34 5.36 -17.34 -0.09 1.25 16 21 N -0.81 -22.01 13.65 55.55 0.76 -21.25 16 22 Si 1.07 26.10 25.08 -169.99 -4.26 21.84 16 23 H -0.28 -6.33 6.34 56.52 0.36 -5.97 16 24 H -0.26 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 C 0.14 2.08 11.01 -17.34 -0.19 1.89 16 27 N -0.53 -7.99 9.20 -13.17 -0.12 -8.11 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 35 H 0.08 0.72 6.48 -51.93 -0.34 0.39 16 36 H 0.08 1.17 7.17 -51.93 -0.37 0.80 16 37 H 0.10 1.75 6.48 -51.93 -0.34 1.42 16 38 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.10 2.61 4.30 -52.48 -0.23 2.39 16 42 H 0.28 7.40 8.73 -40.82 -0.36 7.05 16 43 H 0.16 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -32.51 361.96 -7.03 -39.54 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.45 Total: 4.06 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -2.94 Total: -16.04 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.28 Total: -38.63 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.11 Total: -16.22 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -4.26 Total: 21.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.51 -7.03 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776868425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.514 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds