Wall clock time and date at job start Tue Mar 31 2020 14:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35740 * 117.00019 * 2 1 4 4 C 1.38919 * 119.60751 * 179.97438 * 3 2 1 5 5 C 1.38322 * 119.18201 * 179.97438 * 4 3 2 6 6 C 1.39373 * 118.42950 * 359.97438 * 5 4 3 7 7 N 1.40136 * 120.42873 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00390 * 247.35497 * 7 6 5 9 9 C 1.34778 * 119.99983 * 67.35049 * 7 6 5 10 10 O 1.21294 * 120.00069 * 355.05924 * 9 7 6 11 11 C 1.50703 * 120.00268 * 175.05893 * 9 7 6 12 12 C 1.50695 * 109.47185 * 179.97438 * 11 9 7 13 13 C 1.37639 * 120.13346 * 265.30933 * 12 11 9 14 14 C 1.38614 * 120.25139 * 180.32510 * 13 12 11 15 15 C 1.38659 * 120.50070 * 359.66459 * 14 13 12 16 16 C 1.37600 * 120.24549 * 0.02562 * 15 14 13 17 17 C 1.40698 * 120.12633 * 85.00189 * 12 11 9 18 18 C 1.41402 * 120.24285 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99790 * 24.73306 * 18 17 12 20 20 C 1.39942 * 119.99948 * 204.74011 * 18 17 12 21 21 N 1.30823 * 120.00013 * 203.18846 * 20 18 17 22 22 Si 1.86804 * 120.00379 * 23.18236 * 20 18 17 23 23 H 1.48493 * 109.47441 * 270.00576 * 22 20 18 24 24 H 1.48503 * 109.46802 * 30.00359 * 22 20 18 25 25 H 1.48501 * 109.47203 * 149.99811 * 22 20 18 26 26 C 1.38660 * 119.15027 * 0.25745 * 6 5 4 27 27 N 1.31952 * 120.73442 * 359.45169 * 26 6 5 28 28 H 1.08997 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46982 * 300.00286 * 1 2 3 30 30 H 1.09001 * 109.46820 * 60.00347 * 1 2 3 31 31 H 1.07992 * 120.40820 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.78438 * 180.02562 * 5 4 3 33 33 H 1.08992 * 109.47127 * 269.99606 * 8 7 6 34 34 H 1.09001 * 109.46733 * 29.99545 * 8 7 6 35 35 H 1.08999 * 109.47454 * 149.99259 * 8 7 6 36 36 H 1.09004 * 109.46872 * 60.00263 * 11 9 7 37 37 H 1.08993 * 109.46989 * 300.00488 * 11 9 7 38 38 H 1.08000 * 119.87500 * 0.02562 * 13 12 11 39 39 H 1.07994 * 119.75001 * 179.69312 * 14 13 12 40 40 H 1.07996 * 119.88162 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.12856 * 180.02562 * 16 15 14 42 42 H 0.97005 * 119.99940 * 354.96187 * 21 20 18 43 43 H 1.07999 * 119.63305 * 179.72341 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.4330 1.2726 0.0005 5 6 4.0518 2.5097 0.0000 6 6 3.2525 3.6515 -0.0016 7 7 3.8353 4.9259 -0.0017 8 6 3.6944 5.7960 1.1685 9 6 4.5256 5.3512 -1.0783 10 8 4.7190 4.5995 -2.0104 11 6 5.0572 6.7606 -1.1241 12 6 5.7859 6.9806 -2.4247 13 6 7.1499 6.8084 -2.4903 14 6 7.8235 7.0167 -3.6837 15 6 7.1325 7.3934 -4.8254 16 6 5.7679 7.5652 -4.7846 17 6 5.0736 7.3566 -3.5784 18 6 3.6712 7.5296 -3.5247 19 1 3.1924 7.7705 -2.5872 20 6 2.9039 7.3885 -4.6865 21 7 1.7326 7.9651 -4.7708 22 14 3.5520 6.3769 -6.1169 23 1 4.3258 7.2532 -7.0326 24 1 4.4334 5.2986 -5.6014 25 1 2.4121 5.7745 -6.8538 26 6 1.8731 3.5103 0.0028 27 7 1.3177 2.3133 -0.0024 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.0214 0.3671 0.0005 32 1 5.1289 2.5890 0.0000 33 1 2.7975 6.4060 1.0618 34 1 3.6135 5.1852 2.0677 35 1 4.5673 6.4440 1.2468 36 1 5.7441 6.9170 -0.2923 37 1 4.2283 7.4641 -1.0480 38 1 7.6981 6.5146 -1.6074 39 1 8.8944 6.8841 -3.7248 40 1 7.6673 7.5526 -5.7500 41 1 5.2316 7.8583 -5.6751 42 1 1.3639 8.4290 -4.0028 43 1 1.2463 4.3897 0.0061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776868425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:32 Heat of formation + Delta-G solvation = -28.153419 kcal Electronic energy + Delta-G solvation = -27329.114783 eV Core-core repulsion = 23531.945144 eV Total energy + Delta-G solvation = -3797.169638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02443 -40.89444 -39.55039 -38.69215 -36.49530 -35.62957 -33.80236 -33.34082 -31.99264 -31.20622 -28.74768 -28.14658 -27.50806 -26.41470 -24.56951 -24.22663 -23.19111 -21.80743 -20.40801 -19.96908 -19.49990 -18.39507 -18.24111 -17.60815 -17.15225 -17.00558 -16.70924 -16.09038 -15.76506 -15.64088 -15.57383 -15.16828 -14.95673 -14.46727 -14.40281 -14.29995 -13.99890 -13.87061 -13.79034 -13.62100 -13.30592 -13.03740 -12.80488 -12.77047 -12.62273 -12.22085 -12.18108 -11.96830 -11.61065 -11.20297 -11.13138 -11.02145 -10.82807 -10.80588 -10.05470 -9.57959 -9.35760 -9.26942 -9.18900 -6.46558 -0.04934 0.10971 0.82375 0.92347 1.29430 1.49647 1.67267 1.69795 1.89833 2.11841 2.13170 2.58682 2.67040 3.21069 3.50048 3.76618 3.91002 3.97974 4.04505 4.20577 4.25606 4.31351 4.40140 4.42986 4.48099 4.52828 4.56846 4.61013 4.64970 4.69224 4.74882 4.87322 4.93678 4.99161 5.02611 5.17627 5.27903 5.50969 5.61303 5.69290 5.84229 5.92018 6.06016 6.13223 6.19477 6.27515 6.51258 6.66109 6.75387 6.88872 7.26155 8.02415 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.004001 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.111867 B = 6996.501670 C = 7855.522063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.315 6.315 3 C 0.300 3.700 4 C -0.176 4.176 5 C -0.035 4.035 6 C 0.051 3.949 7 N -0.575 5.575 8 C 0.073 3.927 9 C 0.520 3.480 10 O -0.558 6.558 11 C -0.063 4.063 12 C -0.182 4.182 13 C -0.075 4.075 14 C -0.238 4.238 15 C -0.086 4.086 16 C -0.274 4.274 17 C 0.088 3.912 18 C -0.533 4.533 19 H 0.063 0.937 20 C 0.019 3.981 21 N -0.842 5.842 22 Si 1.093 2.907 23 H -0.256 1.256 24 H -0.282 1.282 25 H -0.286 1.286 26 C 0.131 3.869 27 N -0.541 5.541 28 H 0.127 0.873 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.280 0.720 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 -9.153 14.716 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.222 6.222 3 C 0.121 3.879 4 C -0.196 4.196 5 C -0.062 4.062 6 C -0.043 4.043 7 N -0.307 5.307 8 C -0.067 4.067 9 C 0.311 3.689 10 O -0.434 6.434 11 C -0.102 4.102 12 C -0.184 4.184 13 C -0.093 4.093 14 C -0.257 4.257 15 C -0.104 4.104 16 C -0.293 4.293 17 C 0.085 3.915 18 C -0.562 4.562 19 H 0.081 0.919 20 C -0.196 4.196 21 N -0.467 5.467 22 Si 0.917 3.083 23 H -0.181 1.181 24 H -0.207 1.207 25 H -0.213 1.213 26 C -0.026 4.026 27 N -0.265 5.265 28 H 0.145 0.855 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.185 0.815 32 H 0.166 0.834 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.142 0.858 37 H 0.111 0.889 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.934 -10.279 12.714 16.376 hybrid contribution 0.322 1.012 1.312 1.688 sum 1.256 -9.267 14.026 16.858 Atomic orbital electron populations 1.23076 0.75841 1.04813 1.02147 1.86232 1.24356 1.23774 1.87833 1.20107 0.90020 0.84938 0.92812 1.21209 0.91748 0.99731 1.06946 1.21692 1.01232 0.90676 0.92568 1.18591 0.92641 0.86447 1.06589 1.45502 1.53510 1.14078 1.17591 1.22182 1.04032 0.94493 0.86001 1.21396 0.76714 0.90270 0.80552 1.90687 1.57734 1.57792 1.37229 1.20325 1.00943 0.91744 0.97201 1.19458 0.93942 1.09850 0.95136 1.20880 0.93241 0.97254 0.97903 1.20850 0.99502 1.11954 0.93402 1.20982 0.93544 0.97412 0.98453 1.21310 0.95458 1.14039 0.98503 1.17762 0.93333 0.88249 0.92134 1.20492 0.93028 1.45649 0.97069 0.91880 1.27765 0.94565 0.94084 1.03141 1.70611 1.19433 1.24230 1.32393 0.83339 0.74961 0.76270 0.73698 1.18136 1.20725 1.21326 1.22648 0.91973 0.94208 0.93757 1.67299 1.40795 0.98672 1.19743 0.85510 0.92106 0.93273 0.81467 0.83373 0.91536 0.88920 0.88346 0.85771 0.88935 0.85525 0.85545 0.86134 0.88633 0.90882 0.81609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.38 113.37 1.18 1.85 16 2 O -0.31 -7.83 10.48 -90.64 -0.95 -8.78 16 3 C 0.30 8.43 7.49 84.80 0.63 9.07 16 4 C -0.18 -4.50 10.04 22.45 0.23 -4.27 16 5 C -0.03 -0.97 9.49 22.56 0.21 -0.76 16 6 C 0.05 1.52 4.84 38.19 0.18 1.71 16 7 N -0.58 -16.80 2.95 -654.08 -1.93 -18.73 16 8 C 0.07 1.35 10.12 127.77 1.29 2.64 16 9 C 0.52 19.80 7.56 87.66 0.66 20.46 16 10 O -0.56 -27.13 15.62 -3.07 -0.05 -27.17 16 11 C -0.06 -2.23 4.02 29.10 0.12 -2.11 16 12 C -0.18 -8.07 4.43 -19.41 -0.09 -8.15 16 13 C -0.07 -2.96 9.66 22.22 0.21 -2.74 16 14 C -0.24 -9.40 10.05 22.46 0.23 -9.17 16 15 C -0.09 -3.70 10.02 22.22 0.22 -3.48 16 16 C -0.27 -13.68 7.42 22.73 0.17 -13.51 16 17 C 0.09 4.53 5.19 -21.29 -0.11 4.42 16 18 C -0.53 -29.27 8.83 23.46 0.21 -29.06 16 19 H 0.06 3.48 6.50 -2.91 -0.02 3.46 16 20 C 0.02 1.09 5.36 85.26 0.46 1.54 16 21 N -0.84 -47.47 13.65 21.83 0.30 -47.17 16 22 Si 1.09 54.30 25.08 68.60 1.72 56.02 16 23 H -0.26 -11.63 6.34 99.48 0.63 -11.00 16 24 H -0.28 -14.86 7.11 99.48 0.71 -14.16 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 26 C 0.13 3.89 11.01 84.78 0.93 4.83 16 27 N -0.54 -16.19 9.20 -308.44 -2.84 -19.03 16 28 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 30 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 31 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.29 8.05 -2.39 -0.02 1.27 16 35 H 0.10 1.44 6.48 -2.39 -0.02 1.42 16 36 H 0.12 3.18 7.17 -2.38 -0.02 3.17 16 37 H 0.09 3.35 6.48 -2.39 -0.02 3.33 16 38 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 40 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 41 H 0.10 4.83 4.30 -2.91 -0.01 4.82 16 42 H 0.28 15.34 8.73 -92.70 -0.81 14.53 16 43 H 0.17 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -72.89 361.96 3.91 -68.98 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.92 Total: 22.63 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 6.74 Total: -26.75 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -4.47 Total: -84.93 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.00 Total: -35.96 kcal Atomic # 14 Polarization: 54.30 SS G_CDS: 1.72 Total: 56.02 kcal Total: -72.89 3.91 -68.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776868425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.829 kcal (2) G-P(sol) polarization free energy of solvation -72.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds