Wall clock time and date at job start Tue Mar 31 2020 14:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35975 * 117.00239 * 2 1 4 4 C 1.38802 * 120.49555 * 0.24841 * 3 2 1 5 5 C 1.38775 * 118.44674 * 180.24562 * 4 3 2 6 6 C 1.38094 * 119.35263 * 359.75405 * 5 4 3 7 7 N 1.31954 * 120.95568 * 359.97438 * 6 5 4 8 8 C 1.32274 * 121.68911 * 0.02562 * 7 6 5 9 9 N 1.39575 * 119.72290 * 179.97438 * 8 7 6 10 10 C 1.46509 * 119.99957 * 186.83237 * 9 8 7 11 11 C 1.34776 * 120.00170 * 6.83731 * 9 8 7 12 12 O 1.21278 * 120.00183 * 359.97438 * 11 9 8 13 13 C 1.50706 * 119.99899 * 179.97438 * 11 9 8 14 14 C 1.50700 * 109.47018 * 179.97438 * 13 11 9 15 15 C 1.37636 * 120.12789 * 265.00339 * 14 13 11 16 16 C 1.38612 * 120.24818 * 180.29574 * 15 14 13 17 17 C 1.38662 * 120.49780 * 359.44767 * 16 15 14 18 18 C 1.37593 * 120.25021 * 0.55019 * 17 16 15 19 19 C 1.40695 * 120.12437 * 85.02451 * 14 13 11 20 20 C 1.41396 * 120.24962 * 359.95655 * 19 14 13 21 21 H 1.08009 * 119.99328 * 331.03349 * 20 19 14 22 22 C 1.39941 * 120.00300 * 151.03810 * 20 19 14 23 23 N 1.30828 * 119.99829 * 350.08906 * 22 20 19 24 24 Si 1.86795 * 119.99864 * 170.09654 * 22 20 19 25 25 H 1.48498 * 109.47732 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47015 * 119.99662 * 24 22 20 27 27 H 1.48504 * 109.47246 * 239.99551 * 24 22 20 28 28 H 1.09000 * 109.47129 * 300.00086 * 1 2 3 29 29 H 1.09008 * 109.47204 * 59.99866 * 1 2 3 30 30 H 1.09001 * 109.47320 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.77884 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.32453 * 179.72885 * 5 4 3 33 33 H 1.08004 * 119.51838 * 180.02562 * 6 5 4 34 34 H 1.09007 * 109.46857 * 276.17122 * 10 9 8 35 35 H 1.08996 * 109.46760 * 36.16630 * 10 9 8 36 36 H 1.08991 * 109.46962 * 156.16955 * 10 9 8 37 37 H 1.09005 * 109.46680 * 60.00498 * 13 11 9 38 38 H 1.09001 * 109.47396 * 299.99953 * 13 11 9 39 39 H 1.07996 * 119.87757 * 0.02562 * 15 14 13 40 40 H 1.07993 * 119.75367 * 179.69875 * 16 15 14 41 41 H 1.08004 * 119.87330 * 180.30153 * 17 16 15 42 42 H 1.07997 * 120.12944 * 179.74900 * 18 17 16 43 43 H 0.97005 * 119.99349 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.3005 2.3821 0.0052 5 6 1.9744 3.5953 -0.0003 6 6 3.3553 3.6026 -0.0054 7 7 4.0400 2.4746 -0.0047 8 6 3.4384 1.2966 0.0004 9 7 4.2032 0.1290 0.0004 10 6 3.5501 -1.1744 -0.1450 11 6 5.5424 0.2005 0.1341 12 8 6.0830 1.2795 0.2541 13 6 6.3680 -1.0603 0.1347 14 6 7.8240 -0.7071 0.2968 15 6 8.6296 -0.5721 -0.8110 16 6 9.9706 -0.2534 -0.6645 17 6 10.5134 -0.0558 0.5961 18 6 9.7268 -0.1855 1.7175 19 6 8.3652 -0.5146 1.5811 20 6 7.5471 -0.6501 2.7264 21 1 6.4902 -0.4369 2.6633 22 6 8.1069 -1.0604 3.9416 23 7 9.3373 -1.5036 3.9785 24 14 7.0973 -0.9753 5.5109 25 1 5.7464 -0.4414 5.2023 26 1 6.9713 -2.3358 6.0928 27 1 7.7717 -0.0806 6.4856 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2211 2.3497 0.0089 32 1 1.4242 4.5246 -0.0009 33 1 3.8825 4.5452 -0.0092 34 1 3.1920 -1.5118 0.8277 35 1 2.7079 -1.0843 -0.8310 36 1 4.2646 -1.8967 -0.5396 37 1 6.2254 -1.5883 -0.8082 38 1 6.0547 -1.6994 0.9602 39 1 8.2164 -0.7194 -1.7979 40 1 10.5966 -0.1542 -1.5389 41 1 11.5584 0.1970 0.6983 42 1 10.1524 -0.0352 2.6986 43 1 9.7251 -1.7883 4.8208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777054669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:17 Heat of formation + Delta-G solvation = 13.607912 kcal Electronic energy + Delta-G solvation = -27652.249628 eV Core-core repulsion = 23856.890897 eV Total energy + Delta-G solvation = -3795.358731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03283 -39.13821 -38.08852 -37.27875 -35.17167 -33.53445 -32.15414 -31.49558 -30.08626 -29.36300 -27.92723 -26.88514 -26.25159 -25.02107 -23.42114 -22.70920 -20.86343 -20.34604 -18.86677 -18.16643 -17.20308 -17.07759 -16.92559 -16.29963 -15.72126 -15.42372 -15.11587 -14.90073 -14.40959 -14.35469 -13.79487 -13.72099 -13.46028 -13.20074 -12.93882 -12.59497 -12.49816 -12.47778 -12.32741 -11.66198 -11.58400 -11.49808 -11.28916 -11.09912 -11.00808 -10.93030 -10.59900 -10.31504 -10.14385 -9.75668 -9.43612 -9.30909 -9.27116 -9.15307 -8.66518 -7.57394 -7.25025 -7.18898 -6.62753 -4.29896 1.20558 1.30497 2.78064 2.92457 3.03265 3.11300 3.17607 3.21954 3.31024 3.34068 4.00216 4.00412 4.50255 4.65854 4.73800 4.81865 4.91544 4.93813 5.08298 5.23062 5.31679 5.38953 5.43286 5.66462 5.80545 5.83270 5.96928 6.03929 6.06171 6.15308 6.33477 6.37906 6.46506 6.56595 6.66413 6.84458 7.16545 7.20949 7.36040 7.48747 7.53141 7.73035 7.97783 8.14295 8.18640 8.26588 8.38345 8.72074 8.86098 8.99176 9.07683 10.30554 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.004188 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.277114 B = 6684.361590 C = 7601.127376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.139 4.139 5 C -0.181 4.181 6 C 0.099 3.901 7 N -0.443 5.443 8 C 0.360 3.640 9 N -0.557 5.557 10 C 0.079 3.921 11 C 0.502 3.498 12 O -0.453 6.453 13 C -0.065 4.065 14 C -0.180 4.180 15 C -0.082 4.082 16 C -0.235 4.235 17 C -0.109 4.109 18 C -0.153 4.153 19 C 0.128 3.872 20 C -0.455 4.455 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.803 5.803 24 Si 0.904 3.096 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.273 1.273 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.159 0.841 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.027 1.642 -6.294 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.218 6.218 3 C -0.019 4.019 4 C -0.165 4.165 5 C -0.203 4.203 6 C -0.059 4.059 7 N -0.158 5.158 8 C 0.127 3.873 9 N -0.286 5.286 10 C -0.063 4.063 11 C 0.291 3.709 12 O -0.319 6.319 13 C -0.105 4.105 14 C -0.182 4.182 15 C -0.101 4.101 16 C -0.254 4.254 17 C -0.128 4.128 18 C -0.172 4.172 19 C 0.126 3.874 20 C -0.485 4.485 21 H 0.090 0.910 22 C -0.141 4.141 23 N -0.429 5.429 24 Si 0.729 3.271 25 H -0.187 1.187 26 H -0.200 1.200 27 H -0.198 1.198 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.176 0.824 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.138 0.862 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.446 1.888 -6.045 17.623 hybrid contribution -1.722 0.132 0.839 1.920 sum -18.168 2.020 -5.206 19.006 Atomic orbital electron populations 1.23073 0.79532 1.03904 1.01073 1.86428 1.20661 1.25206 1.89479 1.19466 0.91320 0.85904 1.05227 1.21390 1.00161 0.91586 1.03385 1.21824 0.95647 0.97998 1.04834 1.22619 0.91042 0.96020 0.96172 1.67851 1.38181 0.96288 1.13521 1.18238 0.84487 0.87619 0.96911 1.46029 1.07298 1.04731 1.70552 1.22129 0.98342 0.82649 1.03183 1.21606 0.80120 0.93111 0.76102 1.90768 1.69537 1.29914 1.41642 1.20323 0.93779 0.93888 1.02471 1.19100 0.92222 1.12865 0.93976 1.20296 0.93907 1.00072 0.95783 1.20324 0.95195 1.14052 0.95814 1.20702 0.97619 1.01052 0.93394 1.21367 0.94800 1.03661 0.97374 1.17351 0.92169 0.86917 0.90954 1.19494 0.95966 1.40001 0.93051 0.90964 1.25843 0.94996 0.92807 1.00458 1.69805 1.13893 1.31362 1.27871 0.86329 0.80940 0.78509 0.81352 1.18684 1.19994 1.19789 0.92879 0.92900 0.88198 0.84477 0.84859 0.82411 0.91778 0.89223 0.89891 0.90425 0.88349 0.89739 0.89636 0.89557 0.86213 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.83 101.05 0.99 1.13 16 2 O -0.30 -3.43 6.35 -19.66 -0.12 -3.56 16 3 C 0.03 0.42 6.59 -38.92 -0.26 0.17 16 4 C -0.14 -1.55 9.14 -39.17 -0.36 -1.91 16 5 C -0.18 -2.05 10.10 -39.44 -0.40 -2.45 16 6 C 0.10 1.43 11.17 -17.55 -0.20 1.23 16 7 N -0.44 -8.46 7.91 -12.22 -0.10 -8.56 16 8 C 0.36 6.36 7.32 -154.44 -1.13 5.23 16 9 N -0.56 -9.96 3.09 -122.60 -0.38 -10.34 16 10 C 0.08 1.03 8.79 59.85 0.53 1.55 16 11 C 0.50 10.81 7.25 -10.98 -0.08 10.73 16 12 O -0.45 -11.65 14.31 5.56 0.08 -11.57 16 13 C -0.06 -1.33 3.65 -29.03 -0.11 -1.44 16 14 C -0.18 -4.45 4.43 -103.91 -0.46 -4.91 16 15 C -0.08 -1.95 9.66 -39.66 -0.38 -2.33 16 16 C -0.23 -5.58 10.05 -39.29 -0.39 -5.97 16 17 C -0.11 -2.72 10.02 -39.66 -0.40 -3.12 16 18 C -0.15 -4.18 8.66 -38.87 -0.34 -4.51 16 19 C 0.13 3.52 5.55 -106.82 -0.59 2.93 16 20 C -0.45 -12.35 8.08 -37.74 -0.30 -12.65 16 21 H 0.07 1.96 6.76 -52.48 -0.35 1.60 16 22 C 0.07 1.94 5.27 -17.34 -0.09 1.84 16 23 N -0.80 -21.18 10.81 55.55 0.60 -20.58 16 24 Si 0.90 19.57 29.57 -169.99 -5.03 14.54 16 25 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 28 H 0.05 0.33 7.69 -51.93 -0.40 -0.07 16 29 H 0.05 0.30 7.71 -51.92 -0.40 -0.10 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.14 1.07 6.44 -52.49 -0.34 0.73 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.16 1.91 8.06 -52.48 -0.42 1.49 16 34 H 0.06 0.80 8.05 -51.92 -0.42 0.38 16 35 H 0.09 1.02 5.78 -51.93 -0.30 0.72 16 36 H 0.08 0.95 6.22 -51.93 -0.32 0.62 16 37 H 0.08 1.32 7.33 -51.93 -0.38 0.94 16 38 H 0.10 1.97 7.08 -51.93 -0.37 1.60 16 39 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 42 H 0.12 3.37 6.21 -52.49 -0.33 3.04 16 43 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 LS Contribution 354.94 15.07 5.35 5.35 Total: -1.00 -34.29 354.94 -8.85 -43.13 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.28 Total: 6.08 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -3.97 Total: -14.49 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.13 Total: -39.48 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.05 Total: -15.13 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.29 -8.85 -43.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777054669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.739 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds