Wall clock time and date at job start Tue Mar 31 2020 14:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35975 * 117.00239 * 2 1 4 4 C 1.38802 * 120.49555 * 0.24841 * 3 2 1 5 5 C 1.38775 * 118.44674 * 180.24562 * 4 3 2 6 6 C 1.38094 * 119.35263 * 359.75405 * 5 4 3 7 7 N 1.31954 * 120.95568 * 359.97438 * 6 5 4 8 8 C 1.32274 * 121.68911 * 0.02562 * 7 6 5 9 9 N 1.39575 * 119.72290 * 179.97438 * 8 7 6 10 10 C 1.46509 * 119.99957 * 186.83237 * 9 8 7 11 11 C 1.34776 * 120.00170 * 6.83731 * 9 8 7 12 12 O 1.21278 * 120.00183 * 359.97438 * 11 9 8 13 13 C 1.50706 * 119.99899 * 179.97438 * 11 9 8 14 14 C 1.50700 * 109.47018 * 179.97438 * 13 11 9 15 15 C 1.37636 * 120.12789 * 265.00339 * 14 13 11 16 16 C 1.38612 * 120.24818 * 180.29574 * 15 14 13 17 17 C 1.38662 * 120.49780 * 359.44767 * 16 15 14 18 18 C 1.37593 * 120.25021 * 0.55019 * 17 16 15 19 19 C 1.40695 * 120.12437 * 85.02451 * 14 13 11 20 20 C 1.41396 * 120.24962 * 359.95655 * 19 14 13 21 21 H 1.08009 * 119.99328 * 331.03349 * 20 19 14 22 22 C 1.39941 * 120.00300 * 151.03810 * 20 19 14 23 23 N 1.30828 * 119.99829 * 350.08906 * 22 20 19 24 24 Si 1.86795 * 119.99864 * 170.09654 * 22 20 19 25 25 H 1.48498 * 109.47732 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47015 * 119.99662 * 24 22 20 27 27 H 1.48504 * 109.47246 * 239.99551 * 24 22 20 28 28 H 1.09000 * 109.47129 * 300.00086 * 1 2 3 29 29 H 1.09008 * 109.47204 * 59.99866 * 1 2 3 30 30 H 1.09001 * 109.47320 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.77884 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.32453 * 179.72885 * 5 4 3 33 33 H 1.08004 * 119.51838 * 180.02562 * 6 5 4 34 34 H 1.09007 * 109.46857 * 276.17122 * 10 9 8 35 35 H 1.08996 * 109.46760 * 36.16630 * 10 9 8 36 36 H 1.08991 * 109.46962 * 156.16955 * 10 9 8 37 37 H 1.09005 * 109.46680 * 60.00498 * 13 11 9 38 38 H 1.09001 * 109.47396 * 299.99953 * 13 11 9 39 39 H 1.07996 * 119.87757 * 0.02562 * 15 14 13 40 40 H 1.07993 * 119.75367 * 179.69875 * 16 15 14 41 41 H 1.08004 * 119.87330 * 180.30153 * 17 16 15 42 42 H 1.07997 * 120.12944 * 179.74900 * 18 17 16 43 43 H 0.97005 * 119.99349 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.3005 2.3821 0.0052 5 6 1.9744 3.5953 -0.0003 6 6 3.3553 3.6026 -0.0054 7 7 4.0400 2.4746 -0.0047 8 6 3.4384 1.2966 0.0004 9 7 4.2032 0.1290 0.0004 10 6 3.5501 -1.1744 -0.1450 11 6 5.5424 0.2005 0.1341 12 8 6.0830 1.2795 0.2541 13 6 6.3680 -1.0603 0.1347 14 6 7.8240 -0.7071 0.2968 15 6 8.6296 -0.5721 -0.8110 16 6 9.9706 -0.2534 -0.6645 17 6 10.5134 -0.0558 0.5961 18 6 9.7268 -0.1855 1.7175 19 6 8.3652 -0.5146 1.5811 20 6 7.5471 -0.6501 2.7264 21 1 6.4902 -0.4369 2.6633 22 6 8.1069 -1.0604 3.9416 23 7 9.3373 -1.5036 3.9785 24 14 7.0973 -0.9753 5.5109 25 1 5.7464 -0.4414 5.2023 26 1 6.9713 -2.3358 6.0928 27 1 7.7717 -0.0806 6.4856 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2211 2.3497 0.0089 32 1 1.4242 4.5246 -0.0009 33 1 3.8825 4.5452 -0.0092 34 1 3.1920 -1.5118 0.8277 35 1 2.7079 -1.0843 -0.8310 36 1 4.2646 -1.8967 -0.5396 37 1 6.2254 -1.5883 -0.8082 38 1 6.0547 -1.6994 0.9602 39 1 8.2164 -0.7194 -1.7979 40 1 10.5966 -0.1542 -1.5389 41 1 11.5584 0.1970 0.6983 42 1 10.1524 -0.0352 2.6986 43 1 9.7251 -1.7883 4.8208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777054669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:16 Heat of formation + Delta-G solvation = -6.397773 kcal Electronic energy + Delta-G solvation = -27653.117140 eV Core-core repulsion = 23856.890897 eV Total energy + Delta-G solvation = -3796.226243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.14009 -40.55429 -39.23090 -38.89988 -36.57097 -35.48743 -33.63953 -32.76923 -31.38484 -31.13815 -28.71024 -28.56868 -27.27876 -26.92490 -24.63045 -23.70722 -22.81341 -21.97045 -20.41859 -19.05899 -19.03938 -18.44379 -18.05744 -17.39643 -17.16557 -16.94633 -16.40573 -16.26312 -15.90959 -15.40943 -15.39259 -15.29944 -14.54801 -14.46054 -14.36768 -14.35855 -13.89865 -13.56305 -13.42097 -13.35965 -13.07279 -12.86734 -12.79736 -12.70112 -12.49448 -12.28238 -12.12827 -12.05846 -11.35203 -11.27046 -11.21040 -11.10759 -11.07558 -10.36104 -10.02640 -9.19797 -9.15118 -8.69427 -8.55882 -6.32622 0.13542 0.32652 0.96494 1.11773 1.32414 1.45962 1.48671 1.82900 1.87126 2.19033 2.22795 2.79000 2.89646 3.43705 3.72458 3.82834 3.87108 4.07726 4.11062 4.29907 4.35576 4.43484 4.43777 4.48052 4.52213 4.58841 4.70074 4.71711 4.75394 4.81660 4.89614 5.03570 5.04177 5.14284 5.19246 5.37372 5.41519 5.54217 5.59835 5.77110 6.02444 6.15055 6.19976 6.24783 6.29893 6.41966 6.73512 6.99492 7.09556 7.12270 7.40301 8.39716 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.004188 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.277114 B = 6684.361590 C = 7601.127376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.314 6.314 3 C 0.043 3.957 4 C -0.135 4.135 5 C -0.155 4.155 6 C 0.067 3.933 7 N -0.497 5.497 8 C 0.309 3.691 9 N -0.559 5.559 10 C 0.076 3.924 11 C 0.502 3.498 12 O -0.513 6.513 13 C -0.061 4.061 14 C -0.185 4.185 15 C -0.093 4.093 16 C -0.235 4.235 17 C -0.118 4.118 18 C -0.186 4.186 19 C 0.096 3.904 20 C -0.481 4.481 21 H 0.061 0.939 22 C 0.035 3.965 23 N -0.831 5.831 24 Si 0.972 3.028 25 H -0.270 1.270 26 H -0.256 1.256 27 H -0.268 1.268 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.181 0.819 32 H 0.176 0.824 33 H 0.168 0.832 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.537 1.370 -7.125 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.228 6.228 3 C -0.008 4.008 4 C -0.161 4.161 5 C -0.176 4.176 6 C -0.089 4.089 7 N -0.213 5.213 8 C 0.078 3.922 9 N -0.287 5.287 10 C -0.064 4.064 11 C 0.291 3.709 12 O -0.384 6.384 13 C -0.100 4.100 14 C -0.187 4.187 15 C -0.111 4.111 16 C -0.254 4.254 17 C -0.137 4.137 18 C -0.206 4.206 19 C 0.094 3.906 20 C -0.511 4.511 21 H 0.079 0.921 22 C -0.178 4.178 23 N -0.458 5.458 24 Si 0.794 3.206 25 H -0.194 1.194 26 H -0.180 1.180 27 H -0.193 1.193 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.198 0.802 32 H 0.194 0.806 33 H 0.185 0.815 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.133 0.867 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.118 0.882 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.010 1.588 -6.896 21.225 hybrid contribution -0.792 0.273 0.970 1.281 sum -20.802 1.861 -5.926 21.709 Atomic orbital electron populations 1.23442 0.76829 1.05921 1.02339 1.86389 1.23266 1.24133 1.88995 1.19427 0.90117 0.87651 1.03574 1.21910 1.02098 0.90369 1.01701 1.22263 0.94319 0.99981 1.00995 1.22978 0.92930 0.95343 0.97687 1.67653 1.40930 0.97958 1.14712 1.18475 0.86202 0.87113 1.00382 1.45930 1.06314 1.06589 1.69897 1.22372 0.99115 0.80952 1.04005 1.21588 0.81551 0.92278 0.75451 1.90729 1.71155 1.31593 1.44919 1.20310 0.91399 0.94001 1.04294 1.19569 0.94544 1.11209 0.93397 1.20727 0.94023 0.99367 0.96958 1.20744 0.95813 1.12555 0.96326 1.20978 0.98577 1.00733 0.93384 1.21365 0.95677 1.06119 0.97414 1.17725 0.92550 0.87896 0.92460 1.19553 0.95514 1.41730 0.94331 0.92092 1.26600 0.96085 0.92004 1.03116 1.69866 1.15167 1.31802 1.29011 0.85318 0.78742 0.79280 0.77307 1.19436 1.17989 1.19268 0.91875 0.91181 0.86036 0.80203 0.80641 0.81533 0.91411 0.87332 0.88587 0.86736 0.88392 0.86628 0.86472 0.87468 0.88209 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.83 113.37 1.11 1.20 16 2 O -0.31 -6.21 6.35 -93.27 -0.59 -6.80 16 3 C 0.04 1.09 6.59 22.70 0.15 1.24 16 4 C -0.13 -2.52 9.14 22.53 0.21 -2.31 16 5 C -0.15 -3.05 10.10 22.36 0.23 -2.82 16 6 C 0.07 1.95 11.17 84.64 0.95 2.89 16 7 N -0.50 -19.66 7.91 -192.58 -1.52 -21.18 16 8 C 0.31 11.01 7.32 132.98 0.97 11.98 16 9 N -0.56 -20.25 3.09 -660.17 -2.04 -22.29 16 10 C 0.08 1.89 8.79 127.77 1.12 3.02 16 11 C 0.50 22.35 7.25 87.66 0.64 22.99 16 12 O -0.51 -27.92 14.31 -3.02 -0.04 -27.97 16 13 C -0.06 -2.52 3.65 29.10 0.11 -2.41 16 14 C -0.19 -9.39 4.43 -19.41 -0.09 -9.48 16 15 C -0.09 -4.36 9.66 22.22 0.21 -4.15 16 16 C -0.24 -11.08 10.05 22.46 0.23 -10.86 16 17 C -0.12 -6.03 10.02 22.22 0.22 -5.80 16 18 C -0.19 -10.69 8.66 22.73 0.20 -10.49 16 19 C 0.10 5.50 5.55 -21.29 -0.12 5.38 16 20 C -0.48 -27.42 8.08 23.46 0.19 -27.23 16 21 H 0.06 3.50 6.76 -2.91 -0.02 3.48 16 22 C 0.04 1.88 5.27 85.25 0.45 2.33 16 23 N -0.83 -45.52 10.81 21.83 0.24 -45.28 16 24 Si 0.97 41.23 29.57 68.60 2.03 43.26 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H 0.06 0.50 7.69 -2.39 -0.02 0.49 16 29 H 0.07 0.46 7.71 -2.38 -0.02 0.44 16 30 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.18 1.77 6.44 -2.91 -0.02 1.75 16 32 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.17 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.07 1.62 8.05 -2.38 -0.02 1.60 16 35 H 0.11 2.26 5.78 -2.39 -0.01 2.24 16 36 H 0.10 2.06 6.22 -2.39 -0.01 2.05 16 37 H 0.11 3.76 7.33 -2.38 -0.02 3.75 16 38 H 0.10 4.03 7.08 -2.39 -0.02 4.02 16 39 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 40 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 42 H 0.10 5.98 6.21 -2.91 -0.02 5.97 16 43 H 0.28 14.12 8.30 -92.70 -0.77 13.35 16 Total: -1.00 -81.37 354.94 5.88 -75.49 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 1.04 Total: 29.31 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 6.77 Total: -24.53 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -3.33 Total: -88.75 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.64 Total: -34.77 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -81.37 5.88 -75.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777054669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.092 kcal (2) G-P(sol) polarization free energy of solvation -81.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds