Wall clock time and date at job start Tue Mar 31 2020 15:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99943 * 2 1 4 4 H 1.48500 * 109.46998 * 270.00258 * 3 2 1 5 5 H 1.48508 * 109.46962 * 29.99800 * 3 2 1 6 6 H 1.48495 * 109.47094 * 149.99563 * 3 2 1 7 7 C 1.37869 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00156 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99842 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.36343 * 124.88133 * 264.96114 * 10 9 7 12 12 C 1.36008 * 109.70325 * 180.02562 * 11 10 9 13 13 C 1.47226 * 126.70728 * 180.02562 * 12 11 10 14 14 N 1.29852 * 119.99691 * 179.97438 * 13 12 11 15 15 N 1.40103 * 119.99661 * 175.11089 * 14 13 12 16 16 C 1.46380 * 119.32804 * 5.19536 * 15 14 13 17 17 C 1.53503 * 109.01165 * 150.82801 * 16 15 14 18 18 C 1.53240 * 108.42858 * 55.78629 * 17 16 15 19 19 N 1.46382 * 109.15547 * 304.37914 * 18 17 16 20 20 C 1.34133 * 119.32840 * 185.46905 * 15 14 13 21 21 O 1.21618 * 118.69858 * 0.52060 * 20 15 14 22 22 C 1.47356 * 106.58270 * 359.97438 * 12 11 10 23 23 C 1.39342 * 133.95696 * 180.02562 * 22 12 11 24 24 C 1.36712 * 119.79512 * 180.02562 * 23 22 12 25 25 C 1.38778 * 120.46748 * 359.97207 * 24 23 22 26 26 C 1.37766 * 120.63120 * 0.02945 * 25 24 23 27 27 C 1.37843 * 124.87016 * 85.00319 * 10 9 7 28 28 H 0.96998 * 119.99745 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46921 * 60.00687 * 9 7 2 30 30 H 1.08996 * 109.47552 * 300.00395 * 9 7 2 31 31 H 1.08007 * 125.14717 * 0.06354 * 11 10 9 32 32 H 1.07998 * 119.99705 * 359.97438 * 13 12 11 33 33 H 1.09001 * 109.52363 * 270.86403 * 16 15 14 34 34 H 1.08993 * 109.52648 * 31.05657 * 16 15 14 35 35 H 1.08994 * 109.79698 * 296.04088 * 17 16 15 36 36 H 1.08998 * 109.72538 * 175.48878 * 17 16 15 37 37 H 1.09000 * 109.52398 * 184.48169 * 18 17 16 38 38 H 1.08998 * 109.57892 * 64.31911 * 18 17 16 39 39 H 0.96994 * 119.32974 * 209.08432 * 19 18 17 40 40 H 1.08007 * 120.10214 * 0.29459 * 23 22 12 41 41 H 1.08004 * 119.77110 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.68755 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.10967 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0013 11 6 4.3529 -3.2763 1.1161 12 6 4.7613 -4.5245 0.7626 13 6 5.2228 -5.5891 1.6688 14 7 5.5843 -6.7398 1.1878 15 7 6.1196 -7.7171 2.0370 16 6 6.1592 -7.4700 3.4792 17 6 6.0681 -8.8119 4.2191 18 6 7.1980 -9.7184 3.7191 19 7 7.1067 -9.8412 2.2633 20 6 6.5904 -8.8578 1.5113 21 8 6.5471 -9.0065 0.3051 22 6 4.6506 -4.6034 -0.7047 23 6 4.9143 -5.5999 -1.6424 24 6 4.7030 -5.3557 -2.9708 25 6 4.2270 -4.1222 -3.3925 26 6 3.9602 -3.1239 -2.4814 27 6 4.1693 -3.3523 -1.1245 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6796 0.8895 30 1 3.8746 -0.6807 -0.8904 31 1 4.3134 -2.8980 2.1270 32 1 5.2605 -5.4129 2.7337 33 1 7.0928 -6.9704 3.7377 34 1 5.3168 -6.8398 3.7641 35 1 5.1055 -9.2809 4.0159 36 1 6.1769 -8.6489 5.2913 37 1 7.1026 -10.7041 4.1745 38 1 8.1608 -9.2843 3.9885 39 1 7.4258 -10.6502 1.8339 40 1 5.2803 -6.5636 -1.3203 41 1 4.9071 -6.1284 -3.6972 42 1 4.0643 -3.9430 -4.4450 43 1 3.5905 -2.1670 -2.8189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777903287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:02 Heat of formation + Delta-G solvation = 87.746774 kcal Electronic energy + Delta-G solvation = -26619.427293 eV Core-core repulsion = 22859.576215 eV Total energy + Delta-G solvation = -3759.851078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.76103 -40.57613 -36.95963 -36.50944 -36.24686 -33.74732 -32.72619 -31.54086 -30.60271 -29.78361 -28.50006 -27.37616 -26.30786 -23.74385 -23.04771 -22.44170 -21.77360 -20.51315 -19.29978 -18.49883 -17.89553 -17.34005 -17.19549 -16.41053 -16.20414 -15.93571 -15.58994 -14.88451 -14.60852 -14.51553 -14.33362 -14.02811 -13.84486 -13.48760 -13.26686 -12.87212 -12.72758 -12.56709 -12.17646 -12.04752 -11.97527 -11.74816 -11.64062 -11.47245 -11.09979 -10.93171 -10.76853 -10.35188 -10.18521 -10.14378 -9.76064 -9.65472 -9.32831 -9.21703 -8.86651 -8.39159 -7.58282 -6.81338 -6.34075 -4.38924 1.44306 2.01039 2.14869 2.39012 3.08540 3.14409 3.15296 3.17408 3.43810 3.58879 3.68989 4.13867 4.17973 4.34379 4.54974 4.57954 4.74278 4.85746 4.93507 4.97388 5.03969 5.16360 5.24348 5.34954 5.38852 5.57588 5.63392 5.68335 5.88149 6.00120 6.14403 6.21966 6.32400 6.38996 6.43986 6.50746 6.70446 6.83085 7.06453 7.19863 7.23928 7.30866 7.45834 7.56506 7.83400 7.87275 7.95617 8.23138 8.67544 8.71658 9.21011 10.78135 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.002966 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.910462 B = 9439.419991 C =10690.388754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.080 3.920 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.206 3.794 10 N -0.437 5.437 11 C 0.123 3.877 12 C -0.185 4.185 13 C 0.161 3.839 14 N -0.236 5.236 15 N -0.478 5.478 16 C 0.072 3.928 17 C -0.148 4.148 18 C 0.109 3.891 19 N -0.738 5.738 20 C 0.729 3.271 21 O -0.565 6.565 22 C -0.079 4.079 23 C -0.069 4.069 24 C -0.153 4.153 25 C -0.114 4.114 26 C -0.112 4.112 27 C 0.099 3.901 28 H 0.269 0.731 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.170 0.830 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.417 0.583 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.174 -13.642 9.532 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.586 4.586 8 H 0.101 0.899 9 C 0.086 3.914 10 N -0.113 5.113 11 C -0.015 4.015 12 C -0.196 4.196 13 C -0.048 4.048 14 N -0.038 5.038 15 N -0.301 5.301 16 C -0.053 4.053 17 C -0.187 4.187 18 C -0.016 4.016 19 N -0.399 5.399 20 C 0.430 3.570 21 O -0.439 6.439 22 C -0.084 4.084 23 C -0.087 4.087 24 C -0.172 4.172 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.007 4.007 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.188 0.812 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.255 0.745 40 H 0.147 0.853 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.922 -13.776 8.214 21.238 hybrid contribution 0.189 1.081 1.060 1.526 sum 14.111 -12.694 9.274 21.125 Atomic orbital electron populations 1.69878 1.06211 1.27484 1.48447 1.24836 0.94804 0.98877 0.93954 0.86903 0.80285 0.83770 0.79132 1.19637 1.20544 1.18895 1.21209 0.88046 0.95609 1.53710 0.89911 1.20138 0.96888 0.75619 0.98739 1.44325 1.49761 1.13412 1.03804 1.21877 0.96829 0.90820 0.92012 1.18002 1.17448 0.93146 0.90985 1.23572 0.94658 0.89816 0.96752 1.75256 1.12119 0.98540 1.17914 1.47845 1.61979 1.16454 1.03785 1.22102 1.03066 0.98554 0.81588 1.22205 1.00068 0.95273 1.01180 1.21537 0.98479 1.00904 0.80691 1.44952 1.68115 1.19867 1.06992 1.14783 0.78375 0.79020 0.84865 1.90983 1.61137 1.79319 1.12480 1.18893 1.03906 0.93547 0.92067 1.20384 0.98205 0.98434 0.91713 1.20573 1.03801 0.97195 0.95618 1.20706 1.00920 0.93284 0.98481 1.20128 1.03132 1.00296 0.89627 1.18254 1.02669 0.90998 0.88828 0.92047 0.93483 0.94200 0.81234 0.86880 0.90978 0.89415 0.90173 0.88249 0.89701 0.91668 0.74470 0.85251 0.86830 0.86487 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.96 55.43 0.77 -24.69 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 19.31 27.47 -169.99 -4.67 14.64 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.26 -5.44 6.54 56.52 0.37 -5.08 16 7 C -0.55 -14.43 9.94 -34.44 -0.34 -14.77 16 8 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 9 C 0.21 4.48 4.79 -5.19 -0.02 4.46 16 10 N -0.44 -8.93 2.75 -115.35 -0.32 -9.25 16 11 C 0.12 2.11 11.24 -16.35 -0.18 1.93 16 12 C -0.18 -3.25 6.27 -103.34 -0.65 -3.89 16 13 C 0.16 2.40 10.35 -14.74 -0.15 2.24 16 14 N -0.24 -3.97 9.69 32.11 0.31 -3.66 16 15 N -0.48 -6.67 3.82 -65.39 -0.25 -6.92 16 16 C 0.07 0.62 5.85 -3.85 -0.02 0.60 16 17 C -0.15 -0.85 6.22 -26.35 -0.16 -1.02 16 18 C 0.11 0.59 7.20 -3.98 -0.03 0.57 16 19 N -0.74 -7.01 5.58 -65.52 -0.37 -7.37 16 20 C 0.73 10.79 8.29 -88.07 -0.73 10.06 16 21 O -0.56 -11.01 17.33 5.26 0.09 -10.92 16 22 C -0.08 -1.58 6.26 -104.94 -0.66 -2.24 16 23 C -0.07 -1.32 9.77 -39.72 -0.39 -1.70 16 24 C -0.15 -2.65 9.98 -39.93 -0.40 -3.05 16 25 C -0.11 -1.97 10.01 -39.55 -0.40 -2.37 16 26 C -0.11 -2.18 9.98 -39.41 -0.39 -2.57 16 27 C 0.10 2.05 6.80 -83.97 -0.57 1.48 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.05 0.96 7.17 -51.93 -0.37 0.59 16 30 H 0.04 0.86 7.57 -51.93 -0.39 0.46 16 31 H 0.17 2.25 8.06 -52.48 -0.42 1.83 16 32 H 0.11 1.22 5.96 -52.49 -0.31 0.91 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.69 6.34 -51.93 -0.33 0.36 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.42 3.30 8.88 -40.82 -0.36 2.94 16 40 H 0.13 2.57 7.24 -52.48 -0.38 2.19 16 41 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 42 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -35.21 362.23 -9.71 -44.92 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.54 Total: 6.03 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -5.20 Total: -8.24 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.15 Total: -51.89 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.67 Total: 14.64 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.21 -9.71 -44.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777903287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.665 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds