Wall clock time and date at job start Tue Mar 31 2020 15:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99943 * 2 1 4 4 H 1.48500 * 109.46998 * 270.00258 * 3 2 1 5 5 H 1.48508 * 109.46962 * 29.99800 * 3 2 1 6 6 H 1.48495 * 109.47094 * 149.99563 * 3 2 1 7 7 C 1.37869 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00156 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99842 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.36343 * 124.88133 * 264.96114 * 10 9 7 12 12 C 1.36008 * 109.70325 * 180.02562 * 11 10 9 13 13 C 1.47226 * 126.70728 * 180.02562 * 12 11 10 14 14 N 1.29852 * 119.99691 * 179.97438 * 13 12 11 15 15 N 1.40103 * 119.99661 * 175.11089 * 14 13 12 16 16 C 1.46380 * 119.32804 * 5.19536 * 15 14 13 17 17 C 1.53503 * 109.01165 * 150.82801 * 16 15 14 18 18 C 1.53240 * 108.42858 * 55.78629 * 17 16 15 19 19 N 1.46382 * 109.15547 * 304.37914 * 18 17 16 20 20 C 1.34133 * 119.32840 * 185.46905 * 15 14 13 21 21 O 1.21618 * 118.69858 * 0.52060 * 20 15 14 22 22 C 1.47356 * 106.58270 * 359.97438 * 12 11 10 23 23 C 1.39342 * 133.95696 * 180.02562 * 22 12 11 24 24 C 1.36712 * 119.79512 * 180.02562 * 23 22 12 25 25 C 1.38778 * 120.46748 * 359.97207 * 24 23 22 26 26 C 1.37766 * 120.63120 * 0.02945 * 25 24 23 27 27 C 1.37843 * 124.87016 * 85.00319 * 10 9 7 28 28 H 0.96998 * 119.99745 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46921 * 60.00687 * 9 7 2 30 30 H 1.08996 * 109.47552 * 300.00395 * 9 7 2 31 31 H 1.08007 * 125.14717 * 0.06354 * 11 10 9 32 32 H 1.07998 * 119.99705 * 359.97438 * 13 12 11 33 33 H 1.09001 * 109.52363 * 270.86403 * 16 15 14 34 34 H 1.08993 * 109.52648 * 31.05657 * 16 15 14 35 35 H 1.08994 * 109.79698 * 296.04088 * 17 16 15 36 36 H 1.08998 * 109.72538 * 175.48878 * 17 16 15 37 37 H 1.09000 * 109.52398 * 184.48169 * 18 17 16 38 38 H 1.08998 * 109.57892 * 64.31911 * 18 17 16 39 39 H 0.96994 * 119.32974 * 209.08432 * 19 18 17 40 40 H 1.08007 * 120.10214 * 0.29459 * 23 22 12 41 41 H 1.08004 * 119.77110 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.68755 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.10967 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0013 11 6 4.3529 -3.2763 1.1161 12 6 4.7613 -4.5245 0.7626 13 6 5.2228 -5.5891 1.6688 14 7 5.5843 -6.7398 1.1878 15 7 6.1196 -7.7171 2.0370 16 6 6.1592 -7.4700 3.4792 17 6 6.0681 -8.8119 4.2191 18 6 7.1980 -9.7184 3.7191 19 7 7.1067 -9.8412 2.2633 20 6 6.5904 -8.8578 1.5113 21 8 6.5471 -9.0065 0.3051 22 6 4.6506 -4.6034 -0.7047 23 6 4.9143 -5.5999 -1.6424 24 6 4.7030 -5.3557 -2.9708 25 6 4.2270 -4.1222 -3.3925 26 6 3.9602 -3.1239 -2.4814 27 6 4.1693 -3.3523 -1.1245 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6796 0.8895 30 1 3.8746 -0.6807 -0.8904 31 1 4.3134 -2.8980 2.1270 32 1 5.2605 -5.4129 2.7337 33 1 7.0928 -6.9704 3.7377 34 1 5.3168 -6.8398 3.7641 35 1 5.1055 -9.2809 4.0159 36 1 6.1769 -8.6489 5.2913 37 1 7.1026 -10.7041 4.1745 38 1 8.1608 -9.2843 3.9885 39 1 7.4258 -10.6502 1.8339 40 1 5.2803 -6.5636 -1.3203 41 1 4.9071 -6.1284 -3.6972 42 1 4.0643 -3.9430 -4.4450 43 1 3.5905 -2.1670 -2.8189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777903287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:01 Heat of formation + Delta-G solvation = 64.168406 kcal Electronic energy + Delta-G solvation = -26620.449727 eV Core-core repulsion = 22859.576215 eV Total energy + Delta-G solvation = -3760.873512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.15498 -41.56081 -38.08123 -37.94816 -37.13890 -35.40140 -34.19775 -32.68407 -31.68018 -31.32283 -29.90283 -28.91443 -27.11396 -25.11115 -24.22986 -23.59521 -23.23797 -21.87183 -20.51907 -19.54525 -19.19355 -18.83706 -18.29638 -17.59494 -17.39891 -17.02305 -16.79534 -16.37016 -16.17296 -15.45286 -15.42552 -14.98963 -14.96502 -14.85127 -14.74816 -14.43095 -14.14135 -13.68833 -13.50053 -13.35985 -13.18446 -13.04576 -12.61713 -12.54050 -12.36547 -12.32634 -12.29013 -11.83610 -11.75654 -11.64575 -11.27069 -10.88771 -10.77531 -10.62524 -10.14910 -9.59857 -9.03566 -8.38551 -8.20993 -6.49406 0.11970 0.63696 0.96066 1.20118 1.37223 1.38371 1.47932 2.00541 2.14803 2.28002 2.43035 2.74933 2.95054 3.11472 3.56729 3.67798 3.77289 3.87687 3.91528 4.12420 4.24260 4.30690 4.31845 4.35050 4.44751 4.57300 4.62614 4.63547 4.73299 4.77934 4.82800 4.93248 4.96429 5.05078 5.13367 5.25566 5.27006 5.48326 5.63825 5.79695 5.88025 6.00638 6.02667 6.03633 6.41928 6.49473 6.58230 6.60597 6.92676 7.15885 7.64239 8.78336 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.002966 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.910462 B = 9439.419991 C =10690.388754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.021 3.979 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.231 1.231 7 C -0.551 4.551 8 H 0.027 0.973 9 C 0.215 3.785 10 N -0.456 5.456 11 C 0.122 3.878 12 C -0.190 4.190 13 C 0.165 3.835 14 N -0.279 5.279 15 N -0.481 5.481 16 C 0.061 3.939 17 C -0.142 4.142 18 C 0.102 3.898 19 N -0.725 5.725 20 C 0.716 3.284 21 O -0.628 6.628 22 C -0.102 4.102 23 C -0.082 4.082 24 C -0.151 4.151 25 C -0.107 4.107 26 C -0.135 4.135 27 C 0.071 3.929 28 H 0.272 0.728 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.211 0.789 32 H 0.157 0.843 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.423 0.577 40 H 0.117 0.883 41 H 0.140 0.860 42 H 0.150 0.850 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.506 -13.434 11.949 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.179 4.179 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.154 1.154 7 C -0.589 4.589 8 H 0.045 0.955 9 C 0.095 3.905 10 N -0.133 5.133 11 C -0.014 4.014 12 C -0.201 4.201 13 C -0.044 4.044 14 N -0.083 5.083 15 N -0.303 5.303 16 C -0.062 4.062 17 C -0.181 4.181 18 C -0.021 4.021 19 N -0.385 5.385 20 C 0.417 3.583 21 O -0.507 6.507 22 C -0.107 4.107 23 C -0.101 4.101 24 C -0.170 4.170 25 C -0.126 4.126 26 C -0.155 4.155 27 C -0.035 4.035 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.227 0.773 32 H 0.173 0.827 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.262 0.738 40 H 0.135 0.865 41 H 0.158 0.842 42 H 0.167 0.833 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.294 -13.618 10.711 23.784 hybrid contribution -0.545 0.788 0.344 1.018 sum 15.749 -12.830 11.055 23.127 Atomic orbital electron populations 1.70050 1.08553 1.28781 1.50418 1.25837 0.95570 1.03314 0.93175 0.85708 0.79937 0.77749 0.79580 1.19203 1.20551 1.15406 1.21338 0.90666 0.93539 1.53326 0.95488 1.19922 0.93546 0.77057 0.99963 1.44298 1.51118 1.13211 1.04666 1.22518 0.95612 0.90419 0.92814 1.18355 1.17076 0.94199 0.90429 1.23658 0.93906 0.88659 0.98155 1.75088 1.12446 0.99700 1.21031 1.47867 1.61312 1.15520 1.05633 1.22518 1.04363 1.00841 0.78487 1.22262 0.99455 0.93374 1.02988 1.21925 0.99286 1.03031 0.77827 1.44968 1.66292 1.18506 1.08709 1.15218 0.78538 0.79925 0.84598 1.90927 1.63729 1.80731 1.15363 1.19270 1.04243 0.93427 0.93744 1.20434 0.99024 0.97936 0.92681 1.20901 1.02715 0.97935 0.95491 1.21042 0.99395 0.92437 0.99747 1.20348 1.04264 1.00945 0.89961 1.18594 1.03633 0.91709 0.89523 0.91906 0.90836 0.93631 0.77259 0.82656 0.89198 0.88491 0.91473 0.84284 0.86418 0.89911 0.73791 0.86506 0.84211 0.83279 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.88 13.96 21.45 0.30 -55.58 16 2 C 0.02 1.11 5.47 84.65 0.46 1.58 16 3 Si 0.95 39.11 27.47 68.60 1.88 40.99 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.23 -8.25 6.54 99.48 0.65 -7.60 16 7 C -0.55 -29.72 9.94 25.60 0.25 -29.47 16 8 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 9 C 0.22 9.22 4.79 85.63 0.41 9.63 16 10 N -0.46 -18.63 2.75 -518.86 -1.43 -20.06 16 11 C 0.12 4.09 11.24 83.47 0.94 5.03 16 12 C -0.19 -6.67 6.27 -19.03 -0.12 -6.79 16 13 C 0.17 4.77 10.35 87.35 0.90 5.67 16 14 N -0.28 -9.48 9.69 -52.31 -0.51 -9.99 16 15 N -0.48 -13.08 3.82 -479.39 -1.83 -14.91 16 16 C 0.06 0.88 5.85 86.57 0.51 1.39 16 17 C -0.14 -1.12 6.22 30.84 0.19 -0.93 16 18 C 0.10 0.75 7.20 86.48 0.62 1.37 16 19 N -0.73 -12.75 5.58 -479.83 -2.68 -15.43 16 20 C 0.72 21.29 8.29 179.46 1.49 22.78 16 21 O -0.63 -25.63 17.33 -4.09 -0.07 -25.70 16 22 C -0.10 -4.17 6.26 -20.07 -0.13 -4.30 16 23 C -0.08 -3.25 9.77 22.18 0.22 -3.04 16 24 C -0.15 -5.28 9.98 22.04 0.22 -5.06 16 25 C -0.11 -3.68 10.01 22.29 0.22 -3.45 16 26 C -0.13 -5.39 9.98 22.38 0.22 -5.16 16 27 C 0.07 3.03 6.80 38.97 0.26 3.29 16 28 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.07 2.77 7.17 -2.39 -0.02 2.76 16 30 H 0.05 1.90 7.57 -2.39 -0.02 1.88 16 31 H 0.21 4.98 8.06 -2.91 -0.02 4.96 16 32 H 0.16 2.93 5.96 -2.91 -0.02 2.91 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.21 6.34 -2.39 -0.02 1.20 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.42 6.29 8.88 -92.71 -0.82 5.47 16 40 H 0.12 4.90 7.24 -2.91 -0.02 4.88 16 41 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 42 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 43 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -84.20 362.23 2.52 -81.68 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.17 Total: 26.43 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 6.68 Total: -7.45 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -6.15 Total: -115.96 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.07 Total: -25.70 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.88 Total: 40.99 kcal Total: -84.20 2.52 -81.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777903287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.853 kcal (2) G-P(sol) polarization free energy of solvation -84.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds