Wall clock time and date at job start Tue Mar 31 2020 14:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35812 * 117.00078 * 2 1 4 4 C 1.38900 * 119.92599 * 179.97438 * 3 2 1 5 5 C 1.37813 * 120.08097 * 179.97438 * 4 3 2 6 6 C 1.39556 * 119.92261 * 0.02562 * 5 4 3 7 7 C 1.47932 * 120.08294 * 179.97438 * 6 5 4 8 8 N 1.38472 * 119.99884 * 0.02562 * 7 6 5 9 9 N 1.30132 * 120.00608 * 180.02562 * 7 6 5 10 10 O 1.41596 * 120.00108 * 180.02562 * 9 7 6 11 11 C 1.42899 * 113.99634 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47047 * 179.97438 * 11 10 9 13 13 C 1.38636 * 119.75093 * 269.72833 * 12 11 10 14 14 C 1.37616 * 120.24715 * 179.72118 * 13 12 11 15 15 C 1.40717 * 119.74746 * 0.57090 * 14 13 12 16 16 C 1.41391 * 120.24482 * 179.68188 * 15 14 13 17 17 H 1.08007 * 119.99740 * 204.40040 * 16 15 14 18 18 C 1.39943 * 120.00490 * 24.40780 * 16 15 14 19 19 N 1.30830 * 119.99770 * 17.84274 * 18 16 15 20 20 Si 1.86793 * 120.00383 * 197.84893 * 18 16 15 21 21 H 1.48501 * 109.47629 * 89.99429 * 20 18 16 22 22 H 1.48506 * 109.47284 * 209.99904 * 20 18 16 23 23 H 1.48505 * 109.47241 * 329.99355 * 20 18 16 24 24 C 1.40717 * 119.50701 * 359.70243 * 15 14 13 25 25 C 1.37615 * 119.74696 * 359.97438 * 24 15 14 26 26 C 1.39558 * 119.84117 * 0.25463 * 6 5 4 27 27 C 1.37818 * 119.92156 * 359.50893 * 26 6 5 28 28 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47339 * 299.99694 * 1 2 3 30 30 H 1.09001 * 109.47181 * 60.00160 * 1 2 3 31 31 H 1.07997 * 119.95804 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.03929 * 179.97438 * 5 4 3 33 33 H 0.97003 * 120.00469 * 179.97438 * 8 7 6 34 34 H 0.97001 * 119.99668 * 359.97438 * 8 7 6 35 35 H 1.08998 * 109.47152 * 299.99251 * 11 10 9 36 36 H 1.08997 * 109.47502 * 59.99734 * 11 10 9 37 37 H 1.07996 * 119.87595 * 359.97438 * 13 12 11 38 38 H 1.07999 * 120.12694 * 180.27485 * 14 13 12 39 39 H 0.96994 * 119.99940 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.12319 * 179.97438 * 24 15 14 41 41 H 1.08000 * 119.87242 * 179.97438 * 25 24 15 42 42 H 1.07998 * 120.04209 * 179.72712 * 26 6 5 43 43 H 1.07999 * 119.96567 * 180.23717 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 3.4327 1.2810 0.0005 5 6 4.0617 2.5072 0.0000 6 6 3.3032 3.6786 -0.0005 7 6 3.9747 4.9968 -0.0005 8 7 5.3575 5.0693 -0.0005 9 7 3.2660 6.0882 -0.0005 10 8 3.9088 7.3498 -0.0011 11 6 3.0095 8.4603 -0.0004 12 6 3.7975 9.7449 -0.0005 13 6 4.1528 10.3340 1.2031 14 6 4.8773 11.5039 1.2151 15 6 5.2470 12.1087 -0.0006 16 6 5.9855 13.3144 -0.0006 17 1 5.9377 13.9769 -0.8522 18 6 6.7786 13.6493 1.1027 19 7 7.1212 12.7277 1.9659 20 14 7.3478 15.4120 1.3433 21 1 6.3456 16.1498 2.1536 22 1 8.6553 15.4183 2.0474 23 1 7.4953 16.0695 0.0199 24 6 4.8758 11.5047 -1.2161 25 6 4.1572 10.3312 -1.2041 26 6 1.9097 3.6037 0.0048 27 6 1.2874 2.3740 0.0004 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.0191 0.3740 0.0014 32 1 5.1403 2.5615 0.0008 33 1 5.7979 5.9336 -0.0009 34 1 5.8858 4.2558 -0.0002 35 1 2.3809 8.4193 -0.8900 36 1 2.3821 8.4193 0.8900 37 1 3.8636 9.8708 2.1349 38 1 5.1569 11.9588 2.1538 39 1 7.6705 12.9599 2.7308 40 1 5.1540 11.9605 -2.1549 41 1 3.8709 9.8662 -2.1359 42 1 1.3195 4.5081 0.0089 43 1 0.2090 2.3151 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784048012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:38 Heat of formation + Delta-G solvation = 19.570231 kcal Electronic energy + Delta-G solvation = -25136.415043 eV Core-core repulsion = 21341.314857 eV Total energy + Delta-G solvation = -3795.100186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48601 -38.43335 -37.74952 -36.67222 -35.11818 -33.66629 -31.79342 -30.78420 -30.41650 -29.47649 -29.22047 -27.66201 -26.49629 -23.68495 -23.20720 -22.55741 -20.98462 -20.07021 -19.91194 -18.62707 -17.40266 -17.30842 -17.19854 -16.13638 -16.12852 -15.47157 -15.38838 -14.78018 -14.62810 -14.36807 -14.05367 -13.89317 -13.70196 -13.58926 -13.32495 -12.96792 -12.55784 -12.35670 -12.25567 -12.22410 -11.94324 -11.61371 -11.28419 -11.18263 -11.13242 -10.97130 -10.66523 -10.43895 -9.91764 -9.77615 -9.49611 -9.37746 -9.36478 -9.15623 -8.65077 -7.73956 -7.47583 -7.36126 -6.79456 -4.39052 0.75123 1.05088 2.60159 2.72620 2.86422 3.03301 3.05912 3.09114 3.09246 3.49017 3.66733 3.75965 3.90685 4.45692 4.50839 4.59466 4.73287 4.75438 4.95625 5.05461 5.09851 5.12515 5.28726 5.68606 5.71073 5.89780 5.97662 6.02773 6.08268 6.13366 6.23968 6.32032 6.40244 6.43178 6.86034 6.94764 6.98580 7.04889 7.17632 7.27995 7.35724 7.60120 7.77346 7.85632 8.03300 8.12415 8.27362 8.34370 8.61781 8.86281 8.95107 10.14629 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.035474 B = 0.001796 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.129859 B =15590.720037 C =15899.662954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.317 6.317 3 C 0.138 3.862 4 C -0.153 4.153 5 C -0.057 4.057 6 C -0.077 4.077 7 C 0.401 3.599 8 N -0.874 5.874 9 N -0.424 5.424 10 O -0.234 6.234 11 C 0.147 3.853 12 C -0.224 4.224 13 C -0.078 4.078 14 C -0.170 4.170 15 C 0.116 3.884 16 C -0.460 4.460 17 H 0.079 0.921 18 C 0.075 3.925 19 N -0.789 5.789 20 Si 0.910 3.090 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.230 4.230 25 C -0.067 4.067 26 C -0.031 4.031 27 C -0.211 4.211 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.412 0.588 34 H 0.390 0.610 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.281 0.719 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.142 0.858 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 -22.234 -1.524 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C 0.092 3.908 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.080 4.080 7 C 0.123 3.877 8 N -0.429 5.429 9 N -0.189 5.189 10 O -0.247 6.247 11 C 0.072 3.928 12 C -0.227 4.227 13 C -0.097 4.097 14 C -0.189 4.189 15 C 0.113 3.887 16 C -0.489 4.489 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.414 5.414 20 Si 0.734 3.266 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.250 4.250 25 C -0.086 4.086 26 C -0.051 4.051 27 C -0.230 4.230 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.243 0.757 34 H 0.219 0.781 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.160 0.840 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.827 -22.028 -1.311 23.767 hybrid contribution 1.168 0.878 0.189 1.473 sum -7.659 -21.150 -1.122 22.522 Atomic orbital electron populations 1.23104 0.78088 1.04085 1.01695 1.86047 1.21672 1.26955 1.88317 1.19213 0.92402 0.84207 0.95008 1.20262 0.91318 0.98377 1.07220 1.20890 0.99763 0.90545 0.96508 1.18019 0.93266 0.88977 1.07691 1.20928 0.82124 0.91794 0.92832 1.42931 1.04248 1.11745 1.83974 1.77014 1.23907 0.90129 1.27866 1.89855 1.31613 1.08970 1.94279 1.20932 0.91030 0.81891 0.98975 1.18802 1.12976 0.97045 0.93853 1.20550 0.97824 0.96141 0.95187 1.21293 1.01588 0.97280 0.98772 1.17667 0.88570 0.91521 0.90928 1.19647 1.22997 1.04264 1.01985 0.90291 1.25949 0.94549 0.99000 0.94820 1.69838 1.26736 1.33983 1.10810 0.86291 0.78356 0.82398 0.79561 1.19211 1.20291 1.18568 1.20961 1.08567 0.98389 0.97046 1.20395 0.97318 0.95584 0.95299 1.21116 0.93274 0.97804 0.92905 1.21233 1.00384 0.91917 1.09445 0.88148 0.92369 0.92380 0.84626 0.84944 0.75697 0.78147 0.94080 0.94016 0.89437 0.86342 0.90780 0.88881 0.89420 0.84013 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.68 10.49 -19.15 -0.20 -2.88 16 3 C 0.14 1.27 6.69 -39.09 -0.26 1.01 16 4 C -0.15 -1.33 9.97 -39.49 -0.39 -1.72 16 5 C -0.06 -0.52 9.55 -39.25 -0.37 -0.89 16 6 C -0.08 -0.90 5.87 -104.94 -0.62 -1.52 16 7 C 0.40 5.83 7.94 -153.80 -1.22 4.60 16 8 N -0.87 -10.92 8.95 32.56 0.29 -10.63 16 9 N -0.42 -7.52 10.51 32.61 0.34 -7.18 16 10 O -0.23 -4.86 10.34 -11.47 -0.12 -4.97 16 11 C 0.15 3.03 6.51 36.01 0.23 3.27 16 12 C -0.22 -5.22 5.53 -104.33 -0.58 -5.80 16 13 C -0.08 -1.92 9.67 -39.66 -0.38 -2.30 16 14 C -0.17 -4.52 8.70 -38.87 -0.34 -4.85 16 15 C 0.12 3.14 5.57 -106.83 -0.60 2.54 16 16 C -0.46 -12.28 9.05 -37.74 -0.34 -12.62 16 17 H 0.08 2.02 7.91 -52.48 -0.41 1.61 16 18 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 19 N -0.79 -20.51 10.95 55.55 0.61 -19.90 16 20 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 C -0.23 -5.80 9.80 -38.87 -0.38 -6.18 16 25 C -0.07 -1.59 9.67 -39.66 -0.38 -1.97 16 26 C -0.03 -0.34 9.57 -39.24 -0.38 -0.72 16 27 C -0.21 -1.91 9.02 -39.49 -0.36 -2.27 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.24 7.65 -51.93 -0.40 -0.15 16 30 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 0.87 6.41 -52.49 -0.34 0.53 16 33 H 0.41 5.88 7.94 -40.82 -0.32 5.55 16 34 H 0.39 3.44 6.94 -40.82 -0.28 3.15 16 35 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.09 1.98 8.06 -52.49 -0.42 1.55 16 38 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 39 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 40 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.14 1.62 7.55 -52.49 -0.40 1.22 16 43 H 0.13 0.90 6.28 -52.49 -0.33 0.57 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -31.20 369.54 -9.29 -40.49 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -5.29 Total: 12.38 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -5.46 Total: -26.49 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 1.24 Total: -37.71 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.32 Total: -7.86 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.20 -9.29 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784048012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.065 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds