Wall clock time and date at job start Tue Mar 31 2020 14:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35812 * 117.00078 * 2 1 4 4 C 1.38900 * 119.92599 * 179.97438 * 3 2 1 5 5 C 1.37813 * 120.08097 * 179.97438 * 4 3 2 6 6 C 1.39556 * 119.92261 * 0.02562 * 5 4 3 7 7 C 1.47932 * 120.08294 * 179.97438 * 6 5 4 8 8 N 1.38472 * 119.99884 * 0.02562 * 7 6 5 9 9 N 1.30132 * 120.00608 * 180.02562 * 7 6 5 10 10 O 1.41596 * 120.00108 * 180.02562 * 9 7 6 11 11 C 1.42899 * 113.99634 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47047 * 179.97438 * 11 10 9 13 13 C 1.38636 * 119.75093 * 269.72833 * 12 11 10 14 14 C 1.37616 * 120.24715 * 179.72118 * 13 12 11 15 15 C 1.40717 * 119.74746 * 0.57090 * 14 13 12 16 16 C 1.41391 * 120.24482 * 179.68188 * 15 14 13 17 17 H 1.08007 * 119.99740 * 204.40040 * 16 15 14 18 18 C 1.39943 * 120.00490 * 24.40780 * 16 15 14 19 19 N 1.30830 * 119.99770 * 17.84274 * 18 16 15 20 20 Si 1.86793 * 120.00383 * 197.84893 * 18 16 15 21 21 H 1.48501 * 109.47629 * 89.99429 * 20 18 16 22 22 H 1.48506 * 109.47284 * 209.99904 * 20 18 16 23 23 H 1.48505 * 109.47241 * 329.99355 * 20 18 16 24 24 C 1.40717 * 119.50701 * 359.70243 * 15 14 13 25 25 C 1.37615 * 119.74696 * 359.97438 * 24 15 14 26 26 C 1.39558 * 119.84117 * 0.25463 * 6 5 4 27 27 C 1.37818 * 119.92156 * 359.50893 * 26 6 5 28 28 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47339 * 299.99694 * 1 2 3 30 30 H 1.09001 * 109.47181 * 60.00160 * 1 2 3 31 31 H 1.07997 * 119.95804 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.03929 * 179.97438 * 5 4 3 33 33 H 0.97003 * 120.00469 * 179.97438 * 8 7 6 34 34 H 0.97001 * 119.99668 * 359.97438 * 8 7 6 35 35 H 1.08998 * 109.47152 * 299.99251 * 11 10 9 36 36 H 1.08997 * 109.47502 * 59.99734 * 11 10 9 37 37 H 1.07996 * 119.87595 * 359.97438 * 13 12 11 38 38 H 1.07999 * 120.12694 * 180.27485 * 14 13 12 39 39 H 0.96994 * 119.99940 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.12319 * 179.97438 * 24 15 14 41 41 H 1.08000 * 119.87242 * 179.97438 * 25 24 15 42 42 H 1.07998 * 120.04209 * 179.72712 * 26 6 5 43 43 H 1.07999 * 119.96567 * 180.23717 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 3.4327 1.2810 0.0005 5 6 4.0617 2.5072 0.0000 6 6 3.3032 3.6786 -0.0005 7 6 3.9747 4.9968 -0.0005 8 7 5.3575 5.0693 -0.0005 9 7 3.2660 6.0882 -0.0005 10 8 3.9088 7.3498 -0.0011 11 6 3.0095 8.4603 -0.0004 12 6 3.7975 9.7449 -0.0005 13 6 4.1528 10.3340 1.2031 14 6 4.8773 11.5039 1.2151 15 6 5.2470 12.1087 -0.0006 16 6 5.9855 13.3144 -0.0006 17 1 5.9377 13.9769 -0.8522 18 6 6.7786 13.6493 1.1027 19 7 7.1212 12.7277 1.9659 20 14 7.3478 15.4120 1.3433 21 1 6.3456 16.1498 2.1536 22 1 8.6553 15.4183 2.0474 23 1 7.4953 16.0695 0.0199 24 6 4.8758 11.5047 -1.2161 25 6 4.1572 10.3312 -1.2041 26 6 1.9097 3.6037 0.0048 27 6 1.2874 2.3740 0.0004 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.0191 0.3740 0.0014 32 1 5.1403 2.5615 0.0008 33 1 5.7979 5.9336 -0.0009 34 1 5.8858 4.2558 -0.0002 35 1 2.3809 8.4193 -0.8900 36 1 2.3821 8.4193 0.8900 37 1 3.8636 9.8708 2.1349 38 1 5.1569 11.9588 2.1538 39 1 7.6705 12.9599 2.7308 40 1 5.1540 11.9605 -2.1549 41 1 3.8709 9.8662 -2.1359 42 1 1.3195 4.5081 0.0089 43 1 0.2090 2.3151 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784048012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:37 Heat of formation + Delta-G solvation = 2.619760 kcal Electronic energy + Delta-G solvation = -25137.150070 eV Core-core repulsion = 21341.314857 eV Total energy + Delta-G solvation = -3795.835213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.17246 -39.66614 -39.23415 -37.89284 -36.43044 -35.47010 -32.76273 -32.29707 -31.31467 -31.21975 -30.59775 -28.51605 -27.94953 -25.27767 -24.20733 -23.32800 -22.93473 -21.79025 -21.05379 -19.31497 -19.26846 -18.51917 -18.20472 -17.25549 -16.87894 -16.66556 -16.42556 -16.28200 -16.21144 -15.70598 -15.26231 -15.05068 -14.98199 -14.62451 -14.38732 -14.19791 -14.16869 -13.86554 -13.53157 -13.21865 -13.13486 -12.87393 -12.79938 -12.73068 -12.51771 -12.13021 -11.96324 -11.82225 -11.55278 -11.40902 -11.20325 -11.05367 -10.90830 -10.07555 -9.51602 -9.43792 -9.32666 -8.88432 -8.68152 -6.39386 -0.07302 0.33725 0.79251 1.10030 1.37567 1.46246 1.51709 1.72346 2.02478 2.19534 2.32687 2.72003 2.73521 2.83697 3.69007 3.80149 3.87185 4.08056 4.21137 4.27086 4.34119 4.36187 4.42898 4.47601 4.55240 4.58220 4.61042 4.62158 4.77980 4.99915 5.02216 5.12424 5.15533 5.26914 5.31825 5.32988 5.40648 5.59312 5.64375 5.65490 5.88316 5.95227 6.05285 6.18416 6.31996 6.36611 6.64334 6.78684 6.88695 6.97578 7.12580 8.28907 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.035474 B = 0.001796 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.129859 B =15590.720037 C =15899.662954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.140 3.860 4 C -0.157 4.157 5 C -0.046 4.046 6 C -0.105 4.105 7 C 0.412 3.588 8 N -0.864 5.864 9 N -0.456 5.456 10 O -0.263 6.263 11 C 0.158 3.842 12 C -0.220 4.220 13 C -0.084 4.084 14 C -0.192 4.192 15 C 0.085 3.915 16 C -0.495 4.495 17 H 0.079 0.921 18 C 0.034 3.966 19 N -0.822 5.822 20 Si 0.987 3.013 21 H -0.261 1.261 22 H -0.267 1.267 23 H -0.257 1.257 24 C -0.244 4.244 25 C -0.069 4.069 26 C -0.040 4.040 27 C -0.211 4.211 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.405 0.595 34 H 0.409 0.591 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.290 0.710 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.476 -24.285 -1.740 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.093 3.907 4 C -0.175 4.175 5 C -0.066 4.066 6 C -0.108 4.108 7 C 0.135 3.865 8 N -0.419 5.419 9 N -0.226 5.226 10 O -0.273 6.273 11 C 0.082 3.918 12 C -0.223 4.223 13 C -0.102 4.102 14 C -0.211 4.211 15 C 0.083 3.917 16 C -0.524 4.524 17 H 0.098 0.902 18 C -0.182 4.182 19 N -0.447 5.447 20 Si 0.807 3.193 21 H -0.186 1.186 22 H -0.191 1.191 23 H -0.180 1.180 24 C -0.263 4.263 25 C -0.087 4.087 26 C -0.060 4.060 27 C -0.230 4.230 28 H 0.139 0.861 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.175 0.825 32 H 0.174 0.826 33 H 0.234 0.766 34 H 0.240 0.760 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.149 0.851 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.011 -24.119 -1.534 25.793 hybrid contribution 1.151 1.128 0.235 1.628 sum -7.860 -22.991 -1.299 24.332 Atomic orbital electron populations 1.23404 0.76266 1.05810 1.02476 1.86048 1.23609 1.26468 1.87908 1.19436 0.92887 0.84554 0.93831 1.20563 0.91500 0.98945 1.06498 1.21116 1.00867 0.89690 0.94951 1.18073 0.93744 0.88270 1.10690 1.21511 0.82860 0.92231 0.89912 1.42937 1.03872 1.12371 1.82676 1.77123 1.23816 0.89148 1.32493 1.89730 1.32191 1.10510 1.94912 1.20691 0.90410 0.81054 0.99610 1.19139 1.11731 0.98106 0.93293 1.20750 0.97394 0.95589 0.96478 1.21260 1.03171 0.98482 0.98217 1.18028 0.89525 0.92425 0.91770 1.19907 1.24402 1.04842 1.03283 0.90249 1.26847 0.94028 1.03405 0.93877 1.69889 1.27244 1.36173 1.11402 0.85137 0.78160 0.76361 0.79647 1.18594 1.19144 1.18028 1.21168 1.09137 0.99110 0.96912 1.20678 0.96542 0.94960 0.96554 1.21133 0.93202 0.98266 0.93383 1.21392 1.01534 0.91146 1.08926 0.86105 0.91594 0.91565 0.82486 0.82554 0.76568 0.75971 0.93143 0.93661 0.88074 0.87809 0.89953 0.87987 0.86902 0.85110 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.33 -4.67 10.49 -91.44 -0.96 -5.63 16 3 C 0.14 2.24 6.69 22.59 0.15 2.39 16 4 C -0.16 -2.28 9.97 22.33 0.22 -2.06 16 5 C -0.05 -0.73 9.55 22.49 0.21 -0.52 16 6 C -0.11 -2.33 5.87 -20.07 -0.12 -2.44 16 7 C 0.41 11.69 7.94 136.26 1.08 12.78 16 8 N -0.86 -20.67 8.95 -50.91 -0.46 -21.13 16 9 N -0.46 -16.14 10.51 -50.74 -0.53 -16.67 16 10 O -0.26 -10.95 10.34 -38.77 -0.40 -11.35 16 11 C 0.16 6.50 6.51 71.24 0.46 6.96 16 12 C -0.22 -10.33 5.53 -19.67 -0.11 -10.44 16 13 C -0.08 -4.18 9.67 22.22 0.21 -3.96 16 14 C -0.19 -10.58 8.70 22.73 0.20 -10.39 16 15 C 0.08 4.77 5.57 -21.29 -0.12 4.65 16 16 C -0.50 -27.26 9.05 23.46 0.21 -27.05 16 17 H 0.08 4.19 7.91 -2.91 -0.02 4.16 16 18 C 0.03 1.73 5.14 85.26 0.44 2.17 16 19 N -0.82 -43.78 10.95 21.83 0.24 -43.55 16 20 Si 0.99 38.45 29.59 68.60 2.03 40.48 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 24 C -0.24 -12.54 9.80 22.73 0.22 -12.31 16 25 C -0.07 -3.26 9.67 22.22 0.21 -3.04 16 26 C -0.04 -0.84 9.57 22.49 0.22 -0.62 16 27 C -0.21 -3.45 9.02 22.33 0.20 -3.25 16 28 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.38 7.65 -2.39 -0.02 0.36 16 30 H 0.07 0.38 7.65 -2.39 -0.02 0.36 16 31 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.16 1.57 6.41 -2.91 -0.02 1.55 16 33 H 0.40 11.37 7.94 -92.71 -0.74 10.63 16 34 H 0.41 6.40 6.94 -92.71 -0.64 5.76 16 35 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 36 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 37 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 38 H 0.10 5.92 6.16 -2.91 -0.02 5.91 16 39 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 40 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 41 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 42 H 0.13 3.01 7.55 -2.91 -0.02 2.99 16 43 H 0.15 1.75 6.28 -2.91 -0.02 1.73 16 Total: -1.00 -69.16 369.54 4.42 -64.73 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: -0.32 Total: 39.04 kcal Atomic # 6 Polarization: -50.75 SS G_CDS: 4.82 Total: -45.93 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -0.75 Total: -81.35 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -1.36 Total: -16.98 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -69.16 4.42 -64.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784048012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.354 kcal (2) G-P(sol) polarization free energy of solvation -69.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds