Wall clock time and date at job start Tue Mar 31 2020 14:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35718 * 116.99968 * 2 1 4 4 C 1.38664 * 120.13874 * 0.02562 * 3 2 1 5 5 C 1.38102 * 120.07650 * 179.97438 * 4 3 2 6 6 C 1.38478 * 120.35052 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.27606 * 0.02562 * 6 5 4 8 8 C 1.39526 * 119.91904 * 359.97438 * 7 6 5 9 9 C 1.47869 * 120.17450 * 179.97438 * 8 7 6 10 10 N 1.30337 * 119.99935 * 179.97438 * 9 8 7 11 11 N 1.37817 * 120.00063 * 359.97438 * 9 8 7 12 12 O 1.41598 * 120.00360 * 179.97438 * 11 9 8 13 13 C 1.42904 * 114.00247 * 180.02562 * 12 11 9 14 14 C 1.50692 * 109.47027 * 180.02562 * 13 12 11 15 15 C 1.38641 * 119.75063 * 269.72509 * 14 13 12 16 16 C 1.37619 * 120.24910 * 179.72399 * 15 14 13 17 17 C 1.40718 * 119.74404 * 0.56793 * 16 15 14 18 18 C 1.41387 * 120.24124 * 179.68192 * 17 16 15 19 19 H 1.08003 * 120.00440 * 204.40182 * 18 17 16 20 20 C 1.39952 * 120.00160 * 24.40827 * 18 17 16 21 21 N 1.30822 * 120.00099 * 17.84639 * 20 18 17 22 22 Si 1.86798 * 119.99986 * 197.84634 * 20 18 17 23 23 H 1.48499 * 109.47303 * 89.99823 * 22 20 18 24 24 H 1.48500 * 109.47062 * 209.99949 * 22 20 18 25 25 H 1.48503 * 109.46952 * 329.99712 * 22 20 18 26 26 C 1.40715 * 119.51219 * 359.70587 * 17 16 15 27 27 C 1.37618 * 119.74542 * 359.97438 * 26 17 16 28 28 H 1.09002 * 109.47107 * 60.00188 * 1 2 3 29 29 H 1.09004 * 109.46989 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47083 * 299.99556 * 1 2 3 31 31 H 1.08001 * 119.96239 * 359.95394 * 4 3 2 32 32 H 1.07995 * 119.82726 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.86270 * 180.02562 * 6 5 4 34 34 H 1.08006 * 120.03847 * 179.71914 * 7 6 5 35 35 H 0.97002 * 119.99971 * 179.97438 * 10 9 8 36 36 H 0.97000 * 119.99879 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.46532 * 299.99843 * 13 12 11 38 38 H 1.08994 * 109.47047 * 59.99397 * 13 12 11 39 39 H 1.08003 * 119.87203 * 359.97438 * 15 14 13 40 40 H 1.07993 * 120.12428 * 180.27314 * 16 15 14 41 41 H 0.96994 * 120.00127 * 180.02562 * 21 20 18 42 42 H 1.07992 * 120.12744 * 179.97438 * 26 17 16 43 43 H 1.07999 * 119.87411 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2927 2.3740 0.0005 5 6 1.9210 3.6038 0.0011 6 6 3.3035 3.6833 0.0016 7 6 4.0658 2.5343 0.0011 8 6 3.4429 1.2859 0.0005 9 6 4.2550 0.0501 -0.0006 10 7 3.6695 -1.1144 -0.0006 11 7 5.6308 0.1296 -0.0017 12 8 6.4085 -1.0537 -0.0022 13 6 7.8187 -0.8225 -0.0027 14 6 8.5442 -2.1433 -0.0039 15 6 8.8810 -2.7443 1.1992 16 6 9.5386 -3.9531 1.2102 17 6 9.8796 -4.5734 -0.0060 18 6 10.5612 -5.8121 -0.0071 19 1 11.1597 -6.0986 -0.8593 20 6 10.4603 -6.6673 1.0962 21 7 9.4909 -6.5088 1.9602 22 14 11.7099 -8.0351 1.3351 23 1 12.8479 -7.5302 2.1445 24 1 11.0684 -9.1742 2.0395 25 1 12.2068 -8.4884 0.0111 26 6 9.5378 -3.9515 -1.2211 27 6 8.8744 -2.7458 -1.2081 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2141 2.3194 0.0002 32 1 1.3311 4.5084 0.0019 33 1 3.7867 4.6492 0.0024 34 1 5.1438 2.6008 -0.0031 35 1 4.2022 -1.9251 -0.0017 36 1 6.0665 0.9963 -0.0013 37 1 8.0937 -0.2565 -0.8928 38 1 8.0944 -0.2568 0.8872 39 1 8.6228 -2.2638 2.1314 40 1 9.7961 -4.4216 2.1485 41 1 9.4212 -7.1012 2.7250 42 1 9.7950 -4.4185 -2.1602 43 1 8.6106 -2.2668 -2.1394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784049797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:32 Heat of formation + Delta-G solvation = 27.907328 kcal Electronic energy + Delta-G solvation = -25628.864181 eV Core-core repulsion = 21834.125519 eV Total energy + Delta-G solvation = -3794.738662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.13878 -39.82380 -38.94345 -38.14182 -36.54280 -35.54929 -32.61950 -31.91499 -31.31196 -31.09281 -30.60805 -28.54690 -27.95543 -25.45058 -24.56763 -22.99904 -22.88743 -21.99969 -21.24717 -19.36557 -19.30739 -18.58820 -18.26489 -17.28174 -16.87734 -16.59351 -16.43614 -16.32475 -16.06246 -15.69928 -15.42896 -15.10562 -14.79986 -14.48777 -14.28024 -14.10598 -13.94575 -13.83660 -13.54899 -13.12988 -12.89165 -12.85701 -12.73408 -12.57284 -12.40695 -12.12340 -11.90441 -11.85311 -11.65721 -11.52260 -11.31152 -11.09018 -10.52006 -9.88129 -9.48467 -9.37862 -9.19502 -8.97806 -8.72073 -6.43815 0.00441 0.51391 0.58638 1.05992 1.16287 1.36059 1.50215 1.52637 1.93322 2.16740 2.50906 2.63633 2.94385 3.36714 3.60206 3.86168 3.93765 4.02036 4.12973 4.14031 4.31260 4.43461 4.44091 4.45951 4.47383 4.52291 4.53100 4.61322 4.79706 4.91425 4.96386 5.07280 5.08334 5.26909 5.35718 5.36346 5.50608 5.57225 5.60930 5.78925 5.85935 5.87478 6.01568 6.10137 6.28306 6.57637 6.60510 6.82809 6.84671 6.93271 7.48731 8.24654 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.002079 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.633704 B =13467.576774 C =14148.964996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.300 6.300 3 C 0.158 3.842 4 C -0.221 4.221 5 C -0.055 4.055 6 C -0.160 4.160 7 C -0.062 4.062 8 C -0.117 4.117 9 C 0.460 3.540 10 N -0.754 5.754 11 N -0.632 5.632 12 O -0.184 6.184 13 C 0.115 3.885 14 C -0.225 4.225 15 C -0.081 4.081 16 C -0.195 4.195 17 C 0.086 3.914 18 C -0.493 4.493 19 H 0.080 0.920 20 C 0.032 3.968 21 N -0.820 5.820 22 Si 0.988 3.012 23 H -0.259 1.259 24 H -0.268 1.268 25 H -0.256 1.256 26 C -0.247 4.247 27 C -0.066 4.066 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.154 0.846 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.146 0.854 35 H 0.326 0.674 36 H 0.411 0.589 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.290 0.710 42 H 0.101 0.899 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.779 21.249 -1.720 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.211 6.211 3 C 0.109 3.891 4 C -0.239 4.239 5 C -0.073 4.073 6 C -0.178 4.178 7 C -0.081 4.081 8 C -0.121 4.121 9 C 0.183 3.817 10 N -0.387 5.387 11 N -0.325 5.325 12 O -0.189 6.189 13 C 0.040 3.960 14 C -0.228 4.228 15 C -0.100 4.100 16 C -0.215 4.215 17 C 0.084 3.916 18 C -0.521 4.521 19 H 0.099 0.901 20 C -0.184 4.184 21 N -0.445 5.445 22 Si 0.808 3.192 23 H -0.184 1.184 24 H -0.192 1.192 25 H -0.180 1.180 26 C -0.267 4.267 27 C -0.084 4.084 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.172 0.828 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.254 0.746 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.862 20.281 -1.515 25.189 hybrid contribution 1.759 -1.034 0.240 2.054 sum -13.103 19.247 -1.275 23.319 Atomic orbital electron populations 1.23353 0.77753 1.04863 1.02259 1.86512 1.22003 1.25970 1.86613 1.19294 0.90968 0.85847 0.92977 1.21531 1.01328 0.91504 1.09559 1.21542 0.95042 0.97670 0.93056 1.21328 0.94065 0.98781 1.03595 1.21273 1.00942 0.90084 0.95850 1.17760 0.89870 0.90167 1.14288 1.20822 0.77452 0.93726 0.89742 1.69828 1.40078 0.99627 1.29150 1.46945 1.01648 1.00118 1.83811 1.90480 1.18250 1.12610 1.97527 1.21475 0.77525 0.95389 1.01659 1.18929 1.10643 0.99975 0.93239 1.20794 0.97604 0.94939 0.96651 1.21277 1.06309 0.95705 0.98191 1.18053 0.89071 0.92633 0.91866 1.19939 1.27183 1.01833 1.03177 0.90145 1.26890 0.96389 1.01193 0.93885 1.69886 1.27022 1.36285 1.11337 0.85120 0.78044 0.76358 0.79704 1.18395 1.19248 1.17972 1.21182 1.09385 0.99205 0.96885 1.20725 0.96527 0.94463 0.96719 0.91282 0.88029 0.91336 0.82805 0.82017 0.82180 0.83661 0.85840 0.74598 0.90665 0.91187 0.87657 0.87863 0.89882 0.88039 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.30 -8.17 8.37 -90.39 -0.76 -8.92 16 3 C 0.16 3.78 6.69 22.80 0.15 3.94 16 4 C -0.22 -3.40 9.03 22.34 0.20 -3.19 16 5 C -0.05 -0.60 10.03 22.29 0.22 -0.37 16 6 C -0.16 -1.85 10.03 22.24 0.22 -1.62 16 7 C -0.06 -1.03 9.55 22.50 0.21 -0.82 16 8 C -0.12 -2.96 5.89 -19.99 -0.12 -3.08 16 9 C 0.46 14.95 7.96 136.41 1.09 16.04 16 10 N -0.75 -29.25 11.90 -51.09 -0.61 -29.86 16 11 N -0.63 -18.88 6.46 -51.25 -0.33 -19.21 16 12 O -0.18 -6.93 10.48 -38.78 -0.41 -7.34 16 13 C 0.12 3.91 6.34 71.23 0.45 4.36 16 14 C -0.23 -9.80 5.53 -19.67 -0.11 -9.91 16 15 C -0.08 -3.88 9.67 22.22 0.21 -3.67 16 16 C -0.20 -10.57 8.70 22.73 0.20 -10.37 16 17 C 0.09 4.77 5.57 -21.29 -0.12 4.66 16 18 C -0.49 -26.89 9.05 23.46 0.21 -26.67 16 19 H 0.08 4.20 7.91 -2.91 -0.02 4.18 16 20 C 0.03 1.64 5.14 85.26 0.44 2.08 16 21 N -0.82 -43.82 10.95 21.83 0.24 -43.59 16 22 Si 0.99 38.34 29.59 68.60 2.03 40.37 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 24 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 26 C -0.25 -12.44 9.80 22.73 0.22 -12.22 16 27 C -0.07 -2.96 9.67 22.22 0.21 -2.75 16 28 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 29 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 31 H 0.15 1.57 6.30 -2.91 -0.02 1.55 16 32 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 33 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.15 1.75 6.41 -2.91 -0.02 1.73 16 35 H 0.33 13.91 7.92 -92.71 -0.73 13.18 16 36 H 0.41 8.92 6.65 -92.71 -0.62 8.30 16 37 H 0.08 2.17 8.08 -2.38 -0.02 2.15 16 38 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 39 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 40 H 0.10 5.82 6.16 -2.91 -0.02 5.80 16 41 H 0.29 13.98 8.30 -92.71 -0.77 13.22 16 42 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 43 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -72.09 367.09 4.70 -67.39 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: -0.29 Total: 43.44 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 4.82 Total: -42.29 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -0.70 Total: -92.65 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -1.16 Total: -16.26 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -72.09 4.70 -67.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784049797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.300 kcal (2) G-P(sol) polarization free energy of solvation -72.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds