Wall clock time and date at job start Tue Mar 31 2020 14:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35908 * 116.99966 * 2 1 4 4 C 1.38836 * 119.98922 * 0.02672 * 3 2 1 5 5 C 1.38223 * 120.21301 * 180.02562 * 4 3 2 6 6 C 1.38046 * 120.19602 * 359.73690 * 5 4 3 7 7 C 1.39452 * 119.97198 * 0.49497 * 6 5 4 8 8 C 1.48102 * 120.10439 * 179.78758 * 7 6 5 9 9 N 1.30231 * 119.99844 * 179.72091 * 8 7 6 10 10 N 1.37784 * 120.00040 * 359.72245 * 8 7 6 11 11 O 1.41594 * 120.00227 * 180.02562 * 10 8 7 12 12 C 1.42891 * 114.00386 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47580 * 179.97438 * 12 11 10 14 14 C 1.38635 * 119.74985 * 269.73181 * 13 12 11 15 15 C 1.37617 * 120.24687 * 179.71926 * 14 13 12 16 16 C 1.40716 * 119.74723 * 0.57065 * 15 14 13 17 17 C 1.41396 * 120.24644 * 179.68554 * 16 15 14 18 18 H 1.08005 * 119.99733 * 204.40359 * 17 16 15 19 19 C 1.39939 * 120.00101 * 24.40261 * 17 16 15 20 20 N 1.30820 * 120.00244 * 17.84696 * 19 17 16 21 21 Si 1.86804 * 120.00028 * 197.85075 * 19 17 16 22 22 H 1.48499 * 109.47197 * 89.99595 * 21 19 17 23 23 H 1.48506 * 109.47141 * 209.99804 * 21 19 17 24 24 H 1.48498 * 109.46874 * 329.99781 * 21 19 17 25 25 C 1.40719 * 119.51127 * 359.69821 * 16 15 14 26 26 C 1.37620 * 119.74095 * 0.02562 * 25 16 15 27 27 C 1.38484 * 119.98929 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47021 * 299.99693 * 1 2 3 30 30 H 1.08997 * 109.47509 * 59.99661 * 1 2 3 31 31 H 1.07998 * 119.89381 * 359.97253 * 4 3 2 32 32 H 1.07999 * 119.90598 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.01734 * 180.25532 * 6 5 4 34 34 H 0.97004 * 120.00009 * 359.97438 * 9 8 7 35 35 H 0.97001 * 119.99767 * 359.97438 * 10 8 7 36 36 H 1.09007 * 109.47311 * 59.99604 * 12 11 10 37 37 H 1.08998 * 109.47019 * 300.00244 * 12 11 10 38 38 H 1.07993 * 119.87867 * 359.97096 * 14 13 12 39 39 H 1.08003 * 120.13271 * 180.27444 * 15 14 13 40 40 H 0.96997 * 120.00535 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.12787 * 179.97438 * 25 16 15 42 42 H 1.08006 * 119.87289 * 179.97438 * 26 25 16 43 43 H 1.07998 * 120.09619 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2896 2.3752 0.0006 5 6 1.9123 3.6092 0.0000 6 6 3.2903 3.6916 0.0044 7 6 4.0578 2.5273 -0.0010 8 6 5.5364 2.6122 -0.0011 9 7 6.2512 1.5236 -0.0007 10 7 6.1557 3.8430 -0.0016 11 8 7.5693 3.9243 -0.0022 12 6 8.0747 5.2609 -0.0032 13 6 9.5813 5.2283 -0.0031 14 6 10.2692 5.2200 1.2005 15 6 11.6449 5.1846 1.2126 16 6 12.3535 5.1688 -0.0030 17 6 13.7672 5.1391 -0.0030 18 1 14.3152 5.5136 -0.8550 19 6 14.4562 4.6246 1.1010 20 7 13.8333 3.8651 1.9650 21 14 16.2656 5.0223 1.3411 22 1 16.3971 6.2608 2.1499 23 1 16.9303 3.8973 2.0467 24 1 16.9076 5.2250 0.0175 25 6 11.6450 5.1832 -1.2187 26 6 10.2692 5.2129 -1.2067 27 6 3.4290 1.2832 -0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2112 2.3164 0.0005 32 1 1.3191 4.5117 0.0009 33 1 3.7738 4.6573 0.0082 34 1 5.8151 0.6571 0.0000 35 1 5.6233 4.6539 -0.0022 36 1 7.7229 5.7831 0.8867 37 1 7.7222 5.7819 -0.8933 38 1 9.7234 5.2374 2.1322 39 1 12.1788 5.1737 2.1513 40 1 14.3107 3.5087 2.7304 41 1 12.1788 5.1718 -2.1574 42 1 9.7232 5.2244 -2.1385 43 1 4.0185 0.3783 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784051219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:35 Heat of formation + Delta-G solvation = 44.944323 kcal Electronic energy + Delta-G solvation = -25164.337698 eV Core-core repulsion = 21370.337816 eV Total energy + Delta-G solvation = -3793.999882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.59780 -38.55806 -37.86508 -36.86563 -35.20027 -33.74517 -31.71227 -30.68405 -30.46960 -29.55307 -29.25402 -27.67070 -26.69386 -23.81129 -23.42213 -22.60196 -21.02832 -20.62501 -19.97167 -18.89345 -17.54141 -17.32264 -16.63358 -16.38307 -16.17778 -15.73837 -15.36860 -15.14215 -14.86153 -14.38071 -14.28838 -13.89315 -13.72552 -13.64955 -13.07991 -12.81137 -12.64052 -12.34882 -12.25026 -12.12694 -11.96005 -11.65156 -11.44934 -11.37023 -11.14352 -10.94820 -10.71956 -10.41256 -10.15401 -9.68158 -9.41424 -9.20289 -9.16325 -9.14621 -8.65165 -7.82173 -7.49426 -7.38434 -6.79849 -4.40182 0.57009 1.00147 2.11190 2.73999 2.76006 2.88594 3.05903 3.08345 3.09941 3.20290 3.59786 3.90629 4.27679 4.32348 4.50577 4.61426 4.65161 4.69373 4.74934 4.93332 4.96189 5.03824 5.10928 5.48160 5.61629 5.66424 5.68286 5.77817 5.85102 5.98140 6.03800 6.20606 6.27435 6.35534 6.37794 6.92306 6.93528 7.03832 7.24690 7.33009 7.35174 7.58270 7.77898 7.87138 8.02022 8.07268 8.25835 8.60355 8.69542 8.84978 8.93406 10.13954 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.031671 B = 0.001820 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.888560 B =15383.808823 C =15827.181313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.132 3.868 4 C -0.198 4.198 5 C -0.076 4.076 6 C -0.135 4.135 7 C -0.049 4.049 8 C 0.461 3.539 9 N -0.731 5.731 10 N -0.595 5.595 11 O -0.123 6.123 12 C 0.099 3.901 13 C -0.225 4.225 14 C -0.075 4.075 15 C -0.170 4.170 16 C 0.118 3.882 17 C -0.457 4.457 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.784 5.784 21 Si 0.911 3.089 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.230 4.230 26 C -0.063 4.063 27 C -0.128 4.128 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.341 0.659 35 H 0.407 0.593 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.283 0.717 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.566 -1.220 -1.477 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.087 3.913 4 C -0.218 4.218 5 C -0.094 4.094 6 C -0.155 4.155 7 C -0.054 4.054 8 C 0.179 3.821 9 N -0.364 5.364 10 N -0.284 5.284 11 O -0.127 6.127 12 C 0.023 3.977 13 C -0.228 4.228 14 C -0.093 4.093 15 C -0.190 4.190 16 C 0.115 3.885 17 C -0.486 4.486 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.409 5.409 21 Si 0.735 3.265 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.249 4.249 26 C -0.082 4.082 27 C -0.148 4.148 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.158 0.842 35 H 0.248 0.752 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.094 -1.967 -1.263 24.207 hybrid contribution -0.657 0.455 0.186 0.821 sum -24.751 -1.511 -1.077 24.821 Atomic orbital electron populations 1.23095 0.78078 1.04222 1.01435 1.86101 1.21600 1.26552 1.88596 1.18752 0.91775 0.84475 0.96283 1.21363 1.00275 0.92295 1.07859 1.20904 0.94272 0.97248 0.96976 1.21159 0.93978 0.97616 1.02770 1.19448 0.92353 0.93389 1.00236 1.19130 0.84267 0.86862 0.91797 1.69439 1.40084 1.00060 1.26780 1.45366 0.96548 1.04244 1.82236 1.90878 0.97727 1.26872 1.97174 1.21610 0.93583 0.83397 0.99091 1.18494 0.89700 1.20530 0.94117 1.20524 0.94724 0.99023 0.95060 1.21284 0.92199 1.06675 0.98808 1.17686 0.93311 0.86533 0.90956 1.19673 0.91561 1.35473 1.01913 0.90193 1.25971 1.01107 0.92536 0.94825 1.69836 1.38804 1.21596 1.10640 0.86275 0.81671 0.78996 0.79587 1.19197 1.20233 1.18532 1.20952 0.92989 1.13894 0.97100 1.20379 0.94276 0.98320 0.95180 1.20290 0.91824 0.97614 1.05109 0.88020 0.92489 0.92499 0.85067 0.85038 0.85456 0.84187 0.75158 0.93398 0.93464 0.89328 0.86263 0.90643 0.88753 0.89306 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.82 10.49 -19.45 -0.20 -3.03 16 3 C 0.13 1.26 6.68 -39.27 -0.26 1.00 16 4 C -0.20 -1.49 9.03 -39.37 -0.36 -1.85 16 5 C -0.08 -0.55 10.03 -39.66 -0.40 -0.95 16 6 C -0.13 -1.20 9.55 -39.20 -0.37 -1.57 16 7 C -0.05 -0.57 5.87 -104.96 -0.62 -1.18 16 8 C 0.46 7.00 7.96 -154.30 -1.23 5.77 16 9 N -0.73 -12.92 13.66 32.53 0.44 -12.48 16 10 N -0.60 -9.11 6.46 32.48 0.21 -8.90 16 11 O -0.12 -2.49 11.11 -11.47 -0.13 -2.61 16 12 C 0.10 1.83 6.34 36.00 0.23 2.05 16 13 C -0.23 -5.12 5.53 -104.33 -0.58 -5.69 16 14 C -0.07 -1.80 9.67 -39.66 -0.38 -2.18 16 15 C -0.17 -4.51 8.70 -38.87 -0.34 -4.85 16 16 C 0.12 3.19 5.58 -106.82 -0.60 2.60 16 17 C -0.46 -12.19 9.05 -37.74 -0.34 -12.54 16 18 H 0.08 2.04 7.91 -52.48 -0.41 1.62 16 19 C 0.07 1.88 5.14 -17.35 -0.09 1.79 16 20 N -0.78 -20.55 10.95 55.55 0.61 -19.95 16 21 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 25 C -0.23 -5.77 9.80 -38.87 -0.38 -6.15 16 26 C -0.06 -1.46 9.67 -39.66 -0.38 -1.85 16 27 C -0.13 -1.40 9.45 -39.06 -0.37 -1.77 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.06 0.20 7.66 -51.93 -0.40 -0.19 16 31 H 0.13 0.65 6.28 -52.49 -0.33 0.32 16 32 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.13 0.88 6.41 -52.49 -0.34 0.54 16 34 H 0.34 5.06 6.76 -40.82 -0.28 4.79 16 35 H 0.41 4.57 6.65 -40.82 -0.27 4.30 16 36 H 0.05 0.78 8.08 -51.92 -0.42 0.36 16 37 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.12 3.23 6.16 -52.48 -0.32 2.91 16 40 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 41 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 42 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 43 H 0.14 1.45 6.40 -52.49 -0.34 1.12 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -32.80 368.16 -9.20 -41.99 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.17 Total: 12.05 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -5.47 Total: -26.24 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 1.26 Total: -41.32 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.33 Total: -5.64 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.80 -9.20 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784051219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.939 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds