Wall clock time and date at job start Tue Mar 31 2020 14:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35908 * 116.99966 * 2 1 4 4 C 1.38836 * 119.98922 * 0.02672 * 3 2 1 5 5 C 1.38223 * 120.21301 * 180.02562 * 4 3 2 6 6 C 1.38046 * 120.19602 * 359.73690 * 5 4 3 7 7 C 1.39452 * 119.97198 * 0.49497 * 6 5 4 8 8 C 1.48102 * 120.10439 * 179.78758 * 7 6 5 9 9 N 1.30231 * 119.99844 * 179.72091 * 8 7 6 10 10 N 1.37784 * 120.00040 * 359.72245 * 8 7 6 11 11 O 1.41594 * 120.00227 * 180.02562 * 10 8 7 12 12 C 1.42891 * 114.00386 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47580 * 179.97438 * 12 11 10 14 14 C 1.38635 * 119.74985 * 269.73181 * 13 12 11 15 15 C 1.37617 * 120.24687 * 179.71926 * 14 13 12 16 16 C 1.40716 * 119.74723 * 0.57065 * 15 14 13 17 17 C 1.41396 * 120.24644 * 179.68554 * 16 15 14 18 18 H 1.08005 * 119.99733 * 204.40359 * 17 16 15 19 19 C 1.39939 * 120.00101 * 24.40261 * 17 16 15 20 20 N 1.30820 * 120.00244 * 17.84696 * 19 17 16 21 21 Si 1.86804 * 120.00028 * 197.85075 * 19 17 16 22 22 H 1.48499 * 109.47197 * 89.99595 * 21 19 17 23 23 H 1.48506 * 109.47141 * 209.99804 * 21 19 17 24 24 H 1.48498 * 109.46874 * 329.99781 * 21 19 17 25 25 C 1.40719 * 119.51127 * 359.69821 * 16 15 14 26 26 C 1.37620 * 119.74095 * 0.02562 * 25 16 15 27 27 C 1.38484 * 119.98929 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47021 * 299.99693 * 1 2 3 30 30 H 1.08997 * 109.47509 * 59.99661 * 1 2 3 31 31 H 1.07998 * 119.89381 * 359.97253 * 4 3 2 32 32 H 1.07999 * 119.90598 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.01734 * 180.25532 * 6 5 4 34 34 H 0.97004 * 120.00009 * 359.97438 * 9 8 7 35 35 H 0.97001 * 119.99767 * 359.97438 * 10 8 7 36 36 H 1.09007 * 109.47311 * 59.99604 * 12 11 10 37 37 H 1.08998 * 109.47019 * 300.00244 * 12 11 10 38 38 H 1.07993 * 119.87867 * 359.97096 * 14 13 12 39 39 H 1.08003 * 120.13271 * 180.27444 * 15 14 13 40 40 H 0.96997 * 120.00535 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.12787 * 179.97438 * 25 16 15 42 42 H 1.08006 * 119.87289 * 179.97438 * 26 25 16 43 43 H 1.07998 * 120.09619 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2896 2.3752 0.0006 5 6 1.9123 3.6092 0.0000 6 6 3.2903 3.6916 0.0044 7 6 4.0578 2.5273 -0.0010 8 6 5.5364 2.6122 -0.0011 9 7 6.2512 1.5236 -0.0007 10 7 6.1557 3.8430 -0.0016 11 8 7.5693 3.9243 -0.0022 12 6 8.0747 5.2609 -0.0032 13 6 9.5813 5.2283 -0.0031 14 6 10.2692 5.2200 1.2005 15 6 11.6449 5.1846 1.2126 16 6 12.3535 5.1688 -0.0030 17 6 13.7672 5.1391 -0.0030 18 1 14.3152 5.5136 -0.8550 19 6 14.4562 4.6246 1.1010 20 7 13.8333 3.8651 1.9650 21 14 16.2656 5.0223 1.3411 22 1 16.3971 6.2608 2.1499 23 1 16.9303 3.8973 2.0467 24 1 16.9076 5.2250 0.0175 25 6 11.6450 5.1832 -1.2187 26 6 10.2692 5.2129 -1.2067 27 6 3.4290 1.2832 -0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2112 2.3164 0.0005 32 1 1.3191 4.5117 0.0009 33 1 3.7738 4.6573 0.0082 34 1 5.8151 0.6571 0.0000 35 1 5.6233 4.6539 -0.0022 36 1 7.7229 5.7831 0.8867 37 1 7.7222 5.7819 -0.8933 38 1 9.7234 5.2374 2.1322 39 1 12.1788 5.1737 2.1513 40 1 14.3107 3.5087 2.7304 41 1 12.1788 5.1718 -2.1574 42 1 9.7232 5.2244 -2.1385 43 1 4.0185 0.3783 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784051219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:35 Heat of formation + Delta-G solvation = 25.887809 kcal Electronic energy + Delta-G solvation = -25165.164051 eV Core-core repulsion = 21370.337816 eV Total energy + Delta-G solvation = -3794.826235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.25370 -39.78360 -39.27089 -38.14670 -36.38788 -35.54404 -32.92671 -31.97382 -31.38617 -31.21839 -30.62898 -28.43174 -28.10874 -25.37557 -24.44262 -23.25845 -22.95067 -22.03995 -21.38827 -19.78889 -19.26975 -18.58846 -17.40617 -17.24479 -17.11855 -16.69766 -16.68502 -16.35884 -16.12731 -15.96608 -15.61680 -15.09370 -14.86510 -14.53261 -14.39446 -14.23138 -13.92955 -13.82387 -13.51650 -13.21665 -13.12564 -12.85484 -12.76423 -12.67425 -12.54024 -12.09859 -12.03279 -11.94162 -11.57761 -11.44977 -11.25484 -11.05370 -10.34355 -9.98221 -9.43257 -9.32572 -9.31060 -9.10356 -8.68197 -6.39983 -0.18885 0.35216 0.63739 1.10359 1.17880 1.37557 1.51912 1.54383 1.79825 2.19149 2.30758 2.67226 2.79798 3.44547 3.54398 3.74877 3.83253 4.05831 4.10056 4.16970 4.20983 4.22124 4.39377 4.42114 4.44008 4.48948 4.50916 4.58642 4.74545 4.82741 4.97346 5.00484 5.11889 5.15882 5.29264 5.31864 5.34974 5.40588 5.60955 5.65575 5.89050 6.05536 6.15407 6.22355 6.32724 6.36678 6.59691 6.64728 6.88562 6.97748 7.57651 8.28672 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.031671 B = 0.001820 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.888560 B =15383.808823 C =15827.181313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.122 3.878 4 C -0.187 4.187 5 C -0.070 4.070 6 C -0.133 4.133 7 C -0.068 4.068 8 C 0.465 3.535 9 N -0.788 5.788 10 N -0.583 5.583 11 O -0.163 6.163 12 C 0.105 3.895 13 C -0.221 4.221 14 C -0.082 4.082 15 C -0.195 4.195 16 C 0.085 3.915 17 C -0.495 4.495 18 H 0.080 0.920 19 C 0.032 3.968 20 N -0.822 5.822 21 Si 0.988 3.012 22 H -0.259 1.259 23 H -0.268 1.268 24 H -0.256 1.256 25 C -0.247 4.247 26 C -0.067 4.067 27 C -0.147 4.147 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.347 0.653 35 H 0.427 0.573 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.290 0.710 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.634 0.188 -1.745 28.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.076 3.924 4 C -0.206 4.206 5 C -0.088 4.088 6 C -0.153 4.153 7 C -0.073 4.073 8 C 0.184 3.816 9 N -0.422 5.422 10 N -0.274 5.274 11 O -0.168 6.168 12 C 0.029 3.971 13 C -0.224 4.224 14 C -0.101 4.101 15 C -0.215 4.215 16 C 0.082 3.918 17 C -0.524 4.524 18 H 0.098 0.902 19 C -0.183 4.183 20 N -0.447 5.447 21 Si 0.808 3.192 22 H -0.184 1.184 23 H -0.193 1.193 24 H -0.180 1.180 25 C -0.267 4.267 26 C -0.086 4.086 27 C -0.168 4.168 28 H 0.134 0.866 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.180 0.820 32 H 0.187 0.813 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.272 0.728 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.136 0.864 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -27.207 -0.536 -1.540 27.256 hybrid contribution -0.040 -0.033 0.235 0.241 sum -27.247 -0.569 -1.305 27.284 Atomic orbital electron populations 1.23410 0.75893 1.05748 1.02723 1.86076 1.23931 1.26645 1.88583 1.18862 0.91391 0.85576 0.96565 1.21776 1.01788 0.91555 1.05514 1.21335 0.93719 0.98521 0.95186 1.21453 0.94864 0.97347 1.01662 1.19182 0.90031 0.94748 1.03311 1.19577 0.86054 0.86182 0.89827 1.69387 1.41934 1.01321 1.29598 1.45371 0.94387 1.05373 1.82256 1.90799 1.01027 1.27568 1.97383 1.21541 0.90554 0.83277 1.01689 1.18965 0.92638 1.17624 0.93197 1.20803 0.94082 0.98468 0.96721 1.21274 0.93388 1.08657 0.98164 1.18056 0.94172 0.87640 0.91898 1.19930 0.91973 1.37316 1.03189 0.90199 1.26880 1.05950 0.91583 0.93897 1.69896 1.40971 1.22502 1.11379 0.85122 0.75394 0.79018 0.79673 1.18370 1.19293 1.17985 1.21181 0.94211 1.14425 0.96843 1.20737 0.93741 0.97276 0.96802 1.20327 0.92927 0.97222 1.06290 0.86640 0.91128 0.91100 0.82018 0.81346 0.83409 0.83456 0.72817 0.91087 0.90555 0.87580 0.87902 0.89947 0.88091 0.86403 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.34 -5.67 10.49 -92.51 -0.97 -6.64 16 3 C 0.12 2.14 6.68 22.47 0.15 2.29 16 4 C -0.19 -2.14 9.03 22.41 0.20 -1.94 16 5 C -0.07 -0.71 10.03 22.22 0.22 -0.49 16 6 C -0.13 -1.96 9.55 22.52 0.22 -1.74 16 7 C -0.07 -1.50 5.87 -20.09 -0.12 -1.62 16 8 C 0.46 13.99 7.96 136.52 1.09 15.08 16 9 N -0.79 -28.81 13.66 -50.98 -0.70 -29.51 16 10 N -0.58 -16.92 6.46 -51.14 -0.33 -17.25 16 11 O -0.16 -6.39 11.11 -38.77 -0.43 -6.83 16 12 C 0.11 3.61 6.34 71.23 0.45 4.07 16 13 C -0.22 -9.87 5.53 -19.68 -0.11 -9.98 16 14 C -0.08 -4.01 9.67 22.22 0.21 -3.79 16 15 C -0.20 -10.76 8.70 22.73 0.20 -10.57 16 16 C 0.08 4.78 5.58 -21.29 -0.12 4.66 16 17 C -0.50 -27.49 9.05 23.46 0.21 -27.28 16 18 H 0.08 4.24 7.91 -2.91 -0.02 4.22 16 19 C 0.03 1.68 5.14 85.26 0.44 2.11 16 20 N -0.82 -44.71 10.95 21.82 0.24 -44.48 16 21 Si 0.99 38.93 29.60 68.60 2.03 40.96 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 25 C -0.25 -12.69 9.80 22.73 0.22 -12.46 16 26 C -0.07 -3.09 9.67 22.22 0.21 -2.87 16 27 C -0.15 -3.21 9.45 22.61 0.21 -3.00 16 28 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.29 7.66 -2.38 -0.02 0.27 16 30 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 31 H 0.16 0.81 6.28 -2.91 -0.02 0.79 16 32 H 0.17 0.52 8.06 -2.91 -0.02 0.49 16 33 H 0.15 1.45 6.41 -2.91 -0.02 1.44 16 34 H 0.35 11.07 6.76 -92.71 -0.63 10.44 16 35 H 0.43 8.38 6.65 -92.71 -0.62 7.77 16 36 H 0.07 2.10 8.08 -2.38 -0.02 2.08 16 37 H 0.08 2.18 8.08 -2.39 -0.02 2.16 16 38 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 39 H 0.10 5.89 6.16 -2.91 -0.02 5.87 16 40 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 41 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 42 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 43 H 0.12 2.87 6.40 -2.91 -0.02 2.86 16 Total: -1.00 -75.47 368.16 4.48 -70.99 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -0.18 Total: 39.06 kcal Atomic # 6 Polarization: -51.12 SS G_CDS: 4.81 Total: -46.31 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -0.79 Total: -91.24 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -1.40 Total: -13.46 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -75.47 4.48 -70.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784051219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.882 kcal (2) G-P(sol) polarization free energy of solvation -75.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds