Wall clock time and date at job start Tue Mar 31 2020 14:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34781 * 116.99931 * 2 1 4 4 O 1.21551 * 120.00326 * 359.97438 * 3 2 1 5 5 C 1.47179 * 120.00073 * 179.97438 * 3 2 1 6 6 C 1.36502 * 126.24614 * 180.27589 * 5 3 2 7 7 N 1.35324 * 106.86503 * 180.09980 * 6 5 3 8 8 C 1.46502 * 126.12801 * 179.90827 * 7 6 5 9 9 C 1.50692 * 109.47212 * 264.68972 * 8 7 6 10 10 C 1.38636 * 119.74883 * 90.00023 * 9 8 7 11 11 C 1.37620 * 120.25102 * 179.97438 * 10 9 8 12 12 C 1.40717 * 119.74444 * 0.27063 * 11 10 9 13 13 C 1.41397 * 120.24553 * 179.70220 * 12 11 10 14 14 H 1.07997 * 119.99566 * 24.28741 * 13 12 11 15 15 C 1.39947 * 119.99746 * 204.28899 * 13 12 11 16 16 N 1.30821 * 120.00278 * 17.73983 * 15 13 12 17 17 Si 1.86794 * 119.99656 * 197.73280 * 15 13 12 18 18 H 1.48496 * 109.47373 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47179 * 120.00490 * 17 15 13 20 20 H 1.48503 * 109.47456 * 240.00064 * 17 15 13 21 21 C 1.40722 * 119.50957 * 359.47998 * 12 11 10 22 22 C 1.37612 * 119.74268 * 0.49927 * 21 12 11 23 23 C 1.35865 * 107.74852 * 359.64649 * 7 6 5 24 24 C 1.50702 * 125.49367 * 180.26253 * 23 7 6 25 25 C 1.53001 * 117.50044 * 188.62259 * 24 23 7 26 26 C 1.52998 * 117.49846 * 119.99805 * 24 23 7 27 27 N 1.30154 * 109.01712 * 0.22269 * 23 7 6 28 28 H 1.09004 * 109.47093 * 60.00306 * 1 2 3 29 29 H 1.08997 * 109.47357 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47742 * 300.00309 * 1 2 3 31 31 H 1.08005 * 126.57059 * 359.97438 * 6 5 3 32 32 H 1.09005 * 109.46938 * 144.69043 * 8 7 6 33 33 H 1.08998 * 109.46999 * 24.69289 * 8 7 6 34 34 H 1.08001 * 119.87890 * 359.95339 * 10 9 8 35 35 H 1.08002 * 120.12811 * 180.02562 * 11 10 9 36 36 H 0.96999 * 120.00115 * 179.97438 * 16 15 13 37 37 H 1.07995 * 120.12623 * 180.25111 * 21 12 11 38 38 H 1.08003 * 119.87601 * 179.75109 * 22 21 12 39 39 H 1.08999 * 115.55015 * 334.32749 * 24 23 7 40 40 H 1.09001 * 117.49642 * 359.97438 * 25 24 23 41 41 H 1.08992 * 117.50051 * 145.01689 * 25 24 23 42 42 H 1.09003 * 117.49982 * 214.97678 * 26 24 23 43 43 H 1.08998 * 117.50031 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2204 -0.0005 5 6 3.5336 1.2780 0.0006 6 6 4.2820 2.4196 0.0059 7 7 5.5803 2.0380 0.0021 8 6 6.7427 2.9297 0.0037 9 6 7.2188 3.1368 -1.4110 10 6 6.7065 4.1827 -2.1631 11 6 7.1343 4.3817 -3.4558 12 6 8.0914 3.5152 -4.0157 13 6 8.5338 3.7061 -5.3450 14 1 8.4688 4.6831 -5.8006 15 6 9.0558 2.6290 -6.0702 16 7 8.8260 1.4027 -5.6766 17 14 10.0805 2.9423 -7.6002 18 1 10.1930 4.4051 -7.8297 19 1 11.4361 2.3651 -7.4148 20 1 9.4277 2.3057 -8.7723 21 6 8.6083 2.4601 -3.2412 22 6 8.1662 2.2804 -1.9505 23 6 5.6128 0.6797 0.0025 24 6 6.8603 -0.1657 0.0046 25 6 6.6928 -1.6728 -0.1987 26 6 7.0627 -1.1234 1.1805 27 7 4.3928 0.2263 0.0016 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9093 3.4333 0.0102 32 1 7.5425 2.4830 0.5945 33 1 6.4634 3.8899 0.4373 34 1 5.9685 4.8437 -1.7330 35 1 6.7342 5.1974 -4.0398 36 1 9.1876 0.6562 -6.1794 37 1 9.3462 1.7917 -3.6595 38 1 8.5586 1.4689 -1.3555 39 1 7.7474 0.3042 -0.4202 40 1 5.6801 -2.0529 -0.3336 41 1 7.4695 -2.1947 -0.7575 42 1 8.0829 -1.2839 1.5291 43 1 6.2937 -1.1417 1.9528 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784057239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:57 Heat of formation + Delta-G solvation = 14.871564 kcal Electronic energy + Delta-G solvation = -26811.619450 eV Core-core repulsion = 23016.315515 eV Total energy + Delta-G solvation = -3795.303935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07243 -39.87866 -37.84848 -36.87340 -36.19193 -34.69789 -33.30876 -30.40127 -29.74482 -29.46975 -27.92484 -26.98777 -24.31783 -24.17210 -22.43389 -22.20747 -21.28676 -20.49150 -20.14692 -19.19585 -17.73614 -17.50929 -16.84228 -16.28738 -15.75235 -15.70719 -15.34725 -15.29175 -14.41865 -14.17516 -13.92910 -13.82616 -13.54230 -13.42504 -13.07459 -12.70159 -12.38822 -12.09724 -12.01201 -11.85033 -11.68635 -11.40797 -11.23925 -11.20325 -10.97156 -10.69498 -10.68329 -10.60296 -10.54334 -10.39760 -10.00069 -9.93705 -9.60205 -9.34967 -9.29481 -8.19612 -7.70133 -7.58541 -6.96486 -4.56905 1.59215 2.28063 2.48497 2.76318 2.87502 2.96622 2.97829 3.02690 3.30652 3.50455 3.78653 4.05896 4.35855 4.43763 4.74625 4.92745 5.01861 5.11990 5.14162 5.19006 5.20046 5.30489 5.44056 5.49335 5.59871 5.61373 5.70747 5.73411 5.89325 6.04229 6.08692 6.24010 6.32746 6.35823 6.42377 6.68880 6.75675 6.87507 7.03734 7.13321 7.26186 7.38232 7.59785 7.81437 7.83817 7.85779 8.07624 8.21112 8.42502 8.68075 8.74699 9.97104 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.003243 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.987818 B = 8631.741696 C = 9189.560001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.342 6.342 3 C 0.561 3.439 4 O -0.520 6.520 5 C -0.067 4.067 6 C 0.055 3.945 7 N -0.427 5.427 8 C 0.161 3.839 9 C -0.260 4.260 10 C -0.065 4.065 11 C -0.228 4.228 12 C 0.119 3.881 13 C -0.453 4.453 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.781 5.781 17 Si 0.910 3.090 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.273 1.273 21 C -0.168 4.168 22 C -0.078 4.078 23 C 0.252 3.748 24 C -0.089 4.089 25 C -0.148 4.148 26 C -0.164 4.164 27 N -0.449 5.449 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.186 0.814 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.284 0.716 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -3.584 10.531 11.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.257 6.257 3 C 0.407 3.593 4 O -0.409 6.409 5 C -0.195 4.195 6 C -0.087 4.087 7 N -0.105 5.105 8 C 0.042 3.958 9 C -0.262 4.262 10 C -0.084 4.084 11 C -0.248 4.248 12 C 0.116 3.884 13 C -0.482 4.482 14 H 0.099 0.901 15 C -0.145 4.145 16 N -0.405 5.405 17 Si 0.734 3.266 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.187 4.187 22 C -0.097 4.097 23 C -0.012 4.012 24 C -0.108 4.108 25 C -0.186 4.186 26 C -0.202 4.202 27 N -0.168 5.168 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.203 0.797 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.107 0.893 39 H 0.147 0.853 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.280 -4.283 10.468 12.093 hybrid contribution 0.324 1.057 -0.941 1.452 sum -3.956 -3.226 9.527 10.808 Atomic orbital electron populations 1.23242 0.76813 1.03444 1.02315 1.86683 1.22616 1.32341 1.84086 1.19680 0.86747 0.81221 0.71699 1.90835 1.66082 1.36096 1.47921 1.19134 0.90489 0.90404 1.19447 1.22459 0.83160 1.00002 1.03123 1.45917 1.06863 1.07536 1.50181 1.20747 0.84969 0.92594 0.97479 1.18892 1.08573 1.03636 0.95075 1.20343 0.97528 0.96067 0.94415 1.20958 1.03396 1.04567 0.95863 1.17692 0.87896 0.90118 0.92646 1.19739 1.34816 0.96358 0.97276 0.90084 1.25988 0.94461 0.94445 0.99581 1.69822 1.33540 0.99518 1.37635 0.86222 0.79795 0.80142 0.80442 1.18245 1.19497 1.19778 1.21289 1.03126 1.01753 0.92519 1.20513 0.96881 0.96569 0.95691 1.22236 0.93820 0.80688 1.04471 1.20333 0.93683 0.91234 1.05569 1.22954 1.04000 0.93186 0.98464 1.23033 1.02674 1.02572 0.91960 1.70507 0.98410 1.29601 1.18310 0.91993 0.88243 0.92122 0.79712 0.89238 0.89357 0.89461 0.88765 0.90538 0.86240 0.89319 0.85303 0.87372 0.88134 0.88257 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.57 101.05 1.07 1.46 16 2 O -0.34 -5.41 10.58 -40.71 -0.43 -5.84 16 3 C 0.56 9.80 7.95 34.36 0.27 10.08 16 4 O -0.52 -9.50 16.67 -19.31 -0.32 -9.82 16 5 C -0.07 -1.22 7.02 -83.11 -0.58 -1.80 16 6 C 0.06 0.91 11.25 -16.64 -0.19 0.73 16 7 N -0.43 -7.02 2.71 -114.98 -0.31 -7.33 16 8 C 0.16 2.43 5.90 -5.20 -0.03 2.40 16 9 C -0.26 -4.99 5.49 -104.33 -0.57 -5.56 16 10 C -0.06 -1.33 9.67 -39.66 -0.38 -1.71 16 11 C -0.23 -5.28 9.80 -38.87 -0.38 -5.66 16 12 C 0.12 3.00 5.57 -106.82 -0.60 2.40 16 13 C -0.45 -11.40 9.05 -37.74 -0.34 -11.74 16 14 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 15 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 16 N -0.78 -19.18 10.95 55.55 0.61 -18.57 16 17 Si 0.91 17.69 29.59 -169.99 -5.03 12.65 16 18 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 21 C -0.17 -4.02 8.70 -38.87 -0.34 -4.36 16 22 C -0.08 -1.61 9.37 -39.66 -0.37 -1.98 16 23 C 0.25 4.31 7.44 -154.95 -1.15 3.15 16 24 C -0.09 -1.29 5.76 -91.77 -0.53 -1.82 16 25 C -0.15 -1.93 10.13 -26.73 -0.27 -2.20 16 26 C -0.16 -1.90 10.23 -26.73 -0.27 -2.18 16 27 N -0.45 -8.31 10.87 -7.24 -0.08 -8.38 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.19 2.60 8.06 -52.48 -0.42 2.18 16 32 H 0.09 1.18 7.86 -51.93 -0.41 0.77 16 33 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 34 H 0.09 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 37 H 0.12 2.97 6.16 -52.49 -0.32 2.65 16 38 H 0.09 1.61 5.63 -52.48 -0.30 1.31 16 39 H 0.13 1.89 5.21 -51.93 -0.27 1.62 16 40 H 0.11 1.53 7.87 -51.93 -0.41 1.13 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -29.32 371.76 -10.20 -39.52 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.48 Total: 9.27 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -4.76 Total: -17.11 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.22 Total: -34.28 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.75 Total: -15.67 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.32 -10.20 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784057239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.394 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds